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Qing Nie

Affiliations: 
University of California, Irvine, Irvine, CA 
Area:
Mathematics
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"Qing Nie"
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Myung S. Yun grad student 2003 UC Irvine
Carlo Chan grad student 2010 UC Irvine
Seth D. Haney grad student 2010 UC Irvine
Wing C. Lo grad student 2011 UC Irvine
Yuyu L. Peng grad student 2011 UC Irvine
Su Zhao grad student 2011 UC Irvine
Jeremy Ovadia grad student 2013 UC Irvine
Dongyong Wang grad student 2014 UC Irvine

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Publications

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Sha Y, Wang S, Zhou P, et al. (2020) Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data. Nucleic Acids Research. 48: 9505-9520
Wang S, Drummond ML, Guerrero-Juarez CF, et al. (2020) Single cell transcriptomics of human epidermis identifies basal stem cell transition states. Nature Communications. 11: 4239
Sheng X, Lin Z, Lv C, et al. (2020) Cycling Stem Cells Are Radioresistant and Regenerate the Intestine. Cell Reports. 32: 107952
Zhu Y, Qiu Y, Chen W, et al. (2020) Scaling a Dpp Morphogen Gradient through Feedback Control of Receptors and Co-receptors. Developmental Cell. 53: 724-739.e14
Cang Z, Nie Q. (2020) Inferring spatial and signaling relationships between cells from single cell transcriptomic data. Nature Communications. 11: 2084
Haensel D, Jin S, Sun P, et al. (2020) Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics. Cell Reports. 30: 3932-3947.e6
Kashgari G, Meinecke L, Gordon W, et al. (2020) Epithelial Migration and Non-adhesive Periderm Are Required for Digit Separation during Mammalian Development. Developmental Cell
Lander AD, Nie Q, Sanchez-Tapia C, et al. (2020) Regulatory Feedback on Receptor and Non-receptor Synthesis for Robust Signaling. Developmental Dynamics : An Official Publication of the American Association of Anatomists
Jin S, Zhang L, Nie Q. (2020) scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles. Genome Biology. 21: 25
Xie J, Yang F, Wang J, et al. (2020) DNF: A differential network flow method to identify rewiring drivers for gene regulatory networks Neurocomputing. 410: 202-210
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