Sushmita Roy, Ph.D.
Affiliations: | 2009 | Computer Science | University of New Mexico, Albuquerque, NM, United States |
Area:
Computer Science, Bioinformatics BiologyGoogle:
"Sushmita Roy"Parents
Sign in to add mentorMargaret Werner-Washburne | grad student | 2009 | Univ. of New Mexico | |
(Learning condition-specific networks.) | ||||
Manolis Kellis | post-doc | MIT (Computational Biology Tree) |
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Publications
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Baur B, Shin J, Schreiber J, et al. (2023) Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. Plos Computational Biology. 19: e1011286 |
Zhang S, Pyne S, Pietrzak S, et al. (2023) Inference of cell type-specific gene regulatory networks on cell lineages from single cell omic datasets. Nature Communications. 14: 3064 |
Dozmorov MG, Marshall MA, Rashid NS, et al. (2023) Publisher Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft. Scientific Reports. 13: 7522 |
Dozmorov MG, Marshall MA, Rashid NS, et al. (2023) Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft. Scientific Reports. 13: 5420 |
Knaack SA, Conde D, Chakraborty S, et al. (2022) Temporal change in chromatin accessibility predicts regulators of nodulation in Medicago truncatula. Bmc Biology. 20: 252 |
Fotuhi Siahpirani A, Knaack S, Chasman D, et al. (2022) Dynamic regulatory module networks for inference of cell type-specific transcriptional networks. Genome Research |
Zhang S, Knaack S, Roy S. (2022) Enabling Studies of Genome-Scale Regulatory Network Evolution in Large Phylogenies with MRTLE. Methods in Molecular Biology (Clifton, N.J.). 2477: 439-455 |
Pereira WJ, Knaack S, Chakraborty S, et al. (2022) Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade. The New Phytologist |
Mehta TK, Koch C, Nash W, et al. (2021) Evolution of regulatory networks associated with traits under selection in cichlids. Genome Biology. 22: 25 |
Baur B, Shin J, Zhang S, et al. (2020) Data integration for inferring context-specific gene regulatory networks. Current Opinion in Systems Biology. 23: 38-46 |