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| Freudiger A, Jovanovic VM, Huang Y, et al. (2025) Estimating realized relatedness in free-ranging macaques by inferring identity-by-descent segments. Proceedings of the National Academy of Sciences of the United States of America. 122: e2401106122 |
| Freudiger A, Jovanovic VM, Huang Y, et al. (2024) Taking identity-by-descent analysis into the wild: Estimating realized relatedness in free-ranging macaques. Biorxiv : the Preprint Server For Biology |
| Kolora SRR, Gysi DM, Schaffer S, et al. (2021) Accelerated evolution of tissue-specific genes mediates divergence amidst gene flow in European green lizards. Genome Biology and Evolution |
| Morselli Gysi D, de Miranda Fragoso T, Zebardast F, et al. (2020) Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). Plos One. 15: e0240523 |
| Gysi DM, Nowick K. (2020) Construction, comparison and evolution of networks in life sciences and other disciplines. Journal of the Royal Society, Interface. 17: 20190610 |
| Nowick K, Walter Costa MB, Höner Zu Siederdissen C, et al. (2019) Selection Pressures on RNA Sequences and Structures. Evolutionary Bioinformatics Online. 15: 1176934319871919 |
| Walter Costa MB, Höner Zu Siederdissen C, Dunjić M, et al. (2019) SSS-test: a novel test for detecting positive selection on RNA secondary structure. Bmc Bioinformatics. 20: 151 |
| Kolora SRR, Weigert A, Saffari A, et al. (2018) Divergent evolution in the genomes of closely-related lacertids, Lacerta viridis and L. bilineata and implications for speciation. Gigascience |
| Gysi DM, Voigt A, Fragoso TM, et al. (2018) wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool. Bmc Bioinformatics. 19: 392 |
| Kutsche LK, Gysi DM, Fallmann J, et al. (2018) Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis. Cell Systems |