Daniel Segrè, Ph.D.
Affiliations: | Bioinformatics GRS | Boston University, Boston, MA, United States |
Area:
Bioinformatics Biology, Ecology Biology, Microbiology BiologyGoogle:
"Daniel Segrè"Parents
Sign in to add mentor| Claudio Verzegnassi | research assistant | University of Trieste, Italy (Physics Tree) | |
| Doron Lancet | grad student | (Neurotree) | |
| George M. Church | post-doc | (Chemistry Tree) |
Children
Sign in to add trainee| David B. Bernstein | grad student | Boston University | |
| Hsuan-Chao Chiu | grad student | Boston University | |
| Joshua Goldford | grad student | Boston University | |
| Niels Klitgord | grad student | Boston University | |
| Alan Pacheco | grad student | Boston University | |
| Evan Snitkin | grad student | Boston University | |
| Devlin Campbell Moyer | grad student | 2019- | Boston University (Computational Biology Tree) |
| Ed Reznik | grad student | 2013 | Boston University (BME Tree) |
| Sara B. Collins | grad student | 2014 | Boston University |
| Ali R. Zomorrodi | post-doc | Boston University (Chemistry Tree) |
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Publications
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| Silverstein M, Bhatnagar JM, Segrè D. (2023) Metabolic complexity drives divergence in microbial communities. Biorxiv : the Preprint Server For Biology |
| Kishore D, Birzu G, Hu Z, et al. (2023) Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation. Msystems. e0096122 |
| Jo C, Bernstein DB, Vaisman N, et al. (2023) Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions. Msystems. e0001721 |
| Jo C, Zhang J, Tam JM, et al. (2023) Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability. Materials Today. Bio. 19: 100560 |
| Pacheco AR, Pauvert C, Kishore D, et al. (2022) Toward FAIR Representations of Microbial Interactions. Msystems. e0065922 |
| Forchielli E, Sher D, Segrè D. (2022) Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies. Msystems. e0007022 |
| Zomorrodi AR, Hemez C, Arranz-Gibert P, et al. (2022) Computational design and engineering of an strain producing the nonstandard amino acid -aminophenylalanine. Iscience. 25: 104562 |
| Zoccarato L, Sher D, Miki T, et al. (2022) A comparative whole-genome approach identifies bacterial traits for marine microbial interactions. Communications Biology. 5: 276 |
| Goldford JE, George AB, Flamholz AI, et al. (2022) Protein cost minimization promotes the emergence of coenzyme redundancy. Proceedings of the National Academy of Sciences of the United States of America. 119: e2110787119 |
| Dukovski I, Bajić D, Chacón JM, et al. (2021) A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS). Nature Protocols |