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| Birkebak JM, Adamčík S, Looney BP, et al. (2016) Multilocus phylogenetic reconstruction of the Clavariaceae (Agaricales) reveals polyphyly of agaricoid members. Mycologia. 108: 860-868 |
| Adamčík S, Looney BP, Birkebak JM, et al. (2016) Circumscription of species of Hodophilus (Clavariaceae, Agaricales) in North America with naphthalene odours Botany. 94: 941-956 |
| Adamčík S, Jančovičová S, Looney BP, et al. (2016) Circumscription of species in the Hodophilus foetens complex (Clavariaceae, Agaricales) in Europe Mycological Progress. 16: 47-62 |
| Birkebak JM, Mayor JR, Ryberg KM, et al. (2013) A systematic, morphological and ecological overview of the Clavariaceae (Agaricales). Mycologia. 105: 896-911 |
| Ammirati J, Liimatainen K, Niskanen T, et al. (2012) Cortinarius pinophilus Soop in the Pacific Northwest of North America North American Fungi. 7: 1-6 |
| Leopold EB, Birkebak J, Reinink-Smith L, et al. (2012) Pollen morphology of the three subgenera ofAlnus Palynology. 36: 131-151 |
| Birkebak JM, Vellinga EC, Franco-Molano AE, et al. (2011) Lepiota maculans, an unusual mushroom rediscovered after 105 years Southeastern Naturalist. 10: 267-274 |
| Matheny PB, Austin EA, Birkebak JM, et al. (2010) Craterellus fallax, a Black Trumpet mushroom from eastern North America with a broad host range. Mycorrhiza. 20: 569-75 |
| Birkebak JM. (2010) The genus Leucocoprinus in western Washington Mycotaxon. 112: 83-102 |
| Robertson CP, Wright L, Gamiet S, et al. (2006) Cortinarius rubellus Cooke from British Columbia, Canada and Western Washington, USA North American Fungi. 1: 1-7 |