Guillaume Marcais, Ph.D.
Affiliations: | 2011 | Applied Mathematics and Scientific Computation | University of Maryland, College Park, College Park, MD |
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Parents
Sign in to add mentor| James Yorke | grad student | 2011 | University of Maryland | |
| (Genome assembly techniques.) | ||||
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Publications
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| Marçais G, DeBlasio D, Kingsford C. (2023) Sketching methods with small window guarantee using minimum decycling sets. Arxiv |
| Zheng H, Marçais G, Kingsford C. (2023) Creating and Using Minimizer Sketches in Computational Genomics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Mongia M, Shen C, Davoodi AG, et al. (2023) Large scale sequence alignment via efficient inference in generative models. Scientific Reports. 13: 7285 |
| Zheng H, Kingsford C, Marçais G. (2021) Sequence-specific minimizers via polar sets. Bioinformatics (Oxford, England). 37: i187-i195 |
| Frisby TS, Baker SJ, Marçais G, et al. (2021) HARVESTMAN: a framework for hierarchical feature learning and selection from whole genome sequencing data. Bmc Bioinformatics. 22: 174 |
| Marçais G, DeBlasio D, Pandey P, et al. (2019) Locality-sensitive hashing for the edit distance. Bioinformatics (Oxford, England). 35: i127-i135 |
| Marçais G, Solomon B, Patro R, et al. (2019) Sketching and Sublinear Data Structures in Genomics Annual Review of Biomedical Data Science. 2: 93-118 |
| Marçais G, Delcher AL, Phillippy AM, et al. (2018) MUMmer4: A fast and versatile genome alignment system. Plos Computational Biology. 14: e1005944 |
| Orenstein Y, Pellow D, Marçais G, et al. (2017) Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing. Plos Computational Biology. 13: e1005777 |
| Marçais G, Pellow D, Bork D, et al. (2017) Improving the performance of minimizers and winnowing schemes. Bioinformatics (Oxford, England). 33: i110-i117 |