Daniel P. Aalberts
Affiliations: | 1994 | Massachusetts Institute of Technology, Cambridge, MA, United States | |
| 1997- | Physics | Williams College, Williamstown, MA, United States |
Area:
Biological polymersWebsite:
https://physics.williams.edu/profile/daalbert/Google:
"Daniel P. Aalberts"Bio:
http://panic.williams.edu/
http://panic.williams.edu/cv.pdf
Mean distance: (not calculated yet)
Parents
Sign in to add mentor| George Bekefi | research assistant | 1989 | MIT | |
| Shien-Chi Chen | research assistant | 1989 | MIT | |
| A. Nihat Berker | grad student | 1994 | MIT | |
| (Phase Transition Phenomena in Quantum Spin Systems and in Polyampholyte Gels.) | ||||
| Johannes (Hans) Maria Jozef van Leeuwen | post-doc | 1994-1996 | Leiden | |
| Wim van Saarloos | post-doc | 1994-1996 | Leiden | |
Children
Sign in to add trainee| Nagarajan Nandagopal | research assistant | 2007-2009 | Williams (Chemistry Tree) |
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Publications
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| Hess JM, Jannen WK, Aalberts DP. (2022) The Four mRNA Bases Have Quite Different (Un)folding Free Energies, Applications to RNA Splicing and Translation Initiation with BindOligoNet. Journal of Molecular Biology. 434: 167578 |
| Hess JM, Jannen WK, Aalberts DP. (2014) Modeling Unpairing Costs for Fast Computation of the Net Binding Free Energy of an Oligo to an mRNA Target Biophysical Journal. 106: 285a |
| Meng Y, Aalberts DP. (2013) Free energy cost of stretching mRNA hairpin loops inhibits small RNA binding. Biophysical Journal. 104: 482-7 |
| Aalberts DP, Jannen WK. (2013) Visualizing RNA base-pairing probabilities with RNAbow diagrams. Rna (New York, N.Y.). 19: 475-8 |
| Aalberts DP. (2011) Loop Entropy Assists Tertiary Order: Loopy Stabilization of Stacking Motifs. Entropy (Basel, Switzerland). 13: 1958-1966 |
| Aalberts DP, Nandagopal N. (2010) A two-length-scale polymer theory for RNA loop free energies and helix stacking. Rna (New York, N.Y.). 16: 1350-5 |
| Aalberts DP, Hodas NO. (2005) Asymmetry in RNA pseudoknots: observation and theory. Nucleic Acids Research. 33: 2210-4 |
| Hodas NO, Aalberts DP. (2004) Efficient computation of optimal oligo-RNA binding. Nucleic Acids Research. 32: 6636-42 |
| Garland JA, Aalberts DP. (2004) Thermodynamic modeling of donor splice site recognition in pre-mRNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 041903 |
| Aalberts DP, Parman JM, Goddard NL. (2003) Single-strand stacking free energy from DNA beacon kinetics. Biophysical Journal. 84: 3212-7 |