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Barrett C. Foat

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2007 Columbia University, New York, NY 
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"Barrett Foat"
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Harmen J. Bussemaker grad student 2007 Columbia
 (Quantitative modeling of gene expression regulation by RNA -binding proteins and transcription factors in Saccharomyces cerevisiae.)

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Foat BC, Stormo GD. (2009) Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. Molecular Systems Biology. 5: 268
Foat BC, Tepper RG, Bussemaker HJ. (2008) TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors. Nucleic Acids Research. 36: D125-31
Bussemaker HJ, Foat BC, Ward LD. (2007) Predictive modeling of genome-wide mRNA expression: from modules to molecules. Annual Review of Biophysics and Biomolecular Structure. 36: 329-47
Foat BC, Morozov AV, Bussemaker HJ. (2006) Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. Bioinformatics (Oxford, England). 22: e141-9
Foat BC, Houshmandi SS, Olivas WM, et al. (2005) Profiling condition-specific, genome-wide regulation of mRNA stability in yeast. Proceedings of the National Academy of Sciences of the United States of America. 102: 17675-80
Boorsma A, Foat BC, Vis D, et al. (2005) T-profiler: scoring the activity of predefined groups of genes using gene expression data. Nucleic Acids Research. 33: W592-5
Gao F, Foat BC, Bussemaker HJ. (2004) Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. Bmc Bioinformatics. 5: 31
Zhang Y, Ma C, Delohery T, et al. (2002) Identification of genes expressed in C. elegans touch receptor neurons. Nature. 418: 331-5
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