Reid F Thompson, MD, PhD - Publications

Affiliations: 
2011 Albert Einstein College of Medicine of Yeshiva University, NY, United States 
 2011-2016 Radiation Oncology University of Pennsylvania, Philadelphia, PA, United States 
 2016- Radiation Oncology Oregon Health and Science University, Portland, OR 
Website:
https://www.ohsu.edu/school-of-medicine/radiation-medicine/thompson-lab

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Wang JH, Wahid KA, van Dijk LV, Farahani K, Thompson RF, Fuller CD. Radiomic biomarkers of tumor immune biology and immunotherapy response Clinical and Translational Radiation Oncology. 28: 97-115. DOI: 10.1016/j.ctro.2021.03.006  0.316
2020 Fuller CD, van Dijk LV, Thompson RF, Scott JG, Ludmir EB, Thomas CR. Meeting the Challenge of Scientific Dissemination in the Era of COVID-19: Toward a Modular Approach to Knowledge-Sharing for Radiation Oncology. International Journal of Radiation Oncology, Biology, Physics. 108: 496-505. PMID 32890543 DOI: 10.1016/J.Ijrobp.2020.06.066  0.447
2020 Elhalawani H, Yang P, Abazeed M, Shah C, Mohamed ASR, Thomas CR, Fuller CD, Thompson RF. Real-world applications of deep convolutional neural networks in diagnostic cancer imaging. Chinese Clinical Oncology. PMID 32036673 DOI: 10.21037/Cco.2020.01.02  0.404
2020 Kang J, Thompson RF, Fuller CD, Camphausen KA, Gabriel PE, Thomas CR. In Regard to Wallner et al. International Journal of Radiation Oncology, Biology, Physics. 106: 217-218. PMID 31836083 DOI: 10.1016/J.Ijrobp.2019.10.044  0.377
2020 Caissie A, Mierzwa M, Fuller C, Rajaraman M, Lin A, MacDonald A, Popple R, Xiao Y, VanDijk L, Balter P, Fong H, Ping H, Lee J, Rao A, Martel M, ... Thompson R, et al. 183: Head and Neck Radiotherapy (RT) Patterns of Practice Variability Identified as a Challenge to Real-World Big Data: Recommendations from the Learning from Analysis of Multicentre Big Data Aggregation (Lambda) Consortium Radiotherapy and Oncology. 150: S78-S79. DOI: 10.1016/s0167-8140(20)31075-6  0.353
2020 Caissie A, Mierzwa M, Fuller C, Rajaraman M, Lin A, McDonald A, Popple R, Xiao Y, van Dijk L, Balter P, Fong H, Ping H, Kovoor M, Lee J, Rao A, ... ... Thompson R, et al. Radiotherapy (RT) Patterns Of Practice Variability Identified As A Challenge To Real-World Big Data: Recommendations From The Learning From Analysis Of Multicenter Big Data Aggregation (LAMBDA) Consortium International Journal of Radiation Oncology*Biology*Physics. 108: e773-e774. DOI: 10.1016/j.ijrobp.2020.07.224  0.349
2019 Wood MA, Nguyen A, Struck A, Ellrott K, Nellore A, Thompson RF. neoepiscope improves neoepitope prediction with multi-variant phasing. Bioinformatics (Oxford, England). PMID 31424527 DOI: 10.1093/Bioinformatics/Btz653  0.3
2019 Vapiwala N, Thomas CR, Grover S, Yap ML, Mitin T, Shulman LN, Gospodarowicz MK, Longo J, Petereit DG, Ennis RD, Hayman JA, Rodin D, Buchsbaum JC, Vikram B, Abdel-Wahab M, ... ... Thompson RF, et al. Enhancing Career Paths for Tomorrow's Radiation Oncologists. International Journal of Radiation Oncology, Biology, Physics. PMID 31128144 DOI: 10.1016/J.Ijrobp.2019.05.025  0.441
2019 Elhalawani H, Fuller CD, Thompson RF. The Potential and Pitfalls of Crowdsourced Algorithm Development in Radiation Oncology. Jama Oncology. PMID 30998812 DOI: 10.1001/Jamaoncol.2019.0157  0.432
2019 Thompson RF, Fuller CD, Berman AT, Aneja S, Thomas CR. Career Enrichment Opportunities at the Scientific Frontier in Radiation Oncology. Jco Clinical Cancer Informatics. 1-4. PMID 30817170 DOI: 10.1200/CCI.18.00126  0.386
2018 Thompson RF, Valdes G, Fuller CD, Carpenter CM, Morin O, Aneja S, Lindsay WD, Aerts HJWL, Agrimson B, Deville C, Rosenthal SA, Yu JB, Thomas CR. Artificial Intelligence in Radiation Oncology Imaging. International Journal of Radiation Oncology, Biology, Physics. 102: 1159-1161. PMID 30353870 DOI: 10.1016/J.Ijrobp.2018.05.070  0.434
2018 Thompson RF, Valdes G, Fuller CD, Carpenter CM, Morin O, Aneja S, Lindsay WD, Aerts HJWL, Agrimson B, Deville C, Rosenthal SA, Yu JB, Thomas CR. The Future of Artificial Intelligence in Radiation Oncology. International Journal of Radiation Oncology, Biology, Physics. 102: 247-248. PMID 30191856 DOI: 10.1016/J.Ijrobp.2018.05.072  0.454
2018 Thompson RF, Valdes G, Fuller CD, Carpenter CM, Morin O, Aneja S, Lindsay WD, Aerts HJWL, Agrimson B, Deville C, Rosenthal SA, Yu JB, Thomas CR. Artificial intelligence in radiation oncology: A specialty-wide disruptive transformation? Radiotherapy and Oncology : Journal of the European Society For Therapeutic Radiology and Oncology. PMID 29907338 DOI: 10.1016/J.Radonc.2018.05.030  0.455
2017 Hall WA, Bergom C, Thompson RF, Baschnagel AM, Vijayakumar S, Willers H, Li XA, Schultz CJ, Wilson GD, West CML, Capala J, Coleman CN, Torres-Roca JF, Weidhaas J, Feng FY. Precision Oncology and Genomically Guided Radiation Therapy: A Report From the American Society for Radiation Oncology/American Association of Physicists in Medicine/National Cancer Institute Precision Medicine Conference. International Journal of Radiation Oncology, Biology, Physics. PMID 28964588 DOI: 10.1016/J.Ijrobp.2017.05.044  0.318
2014 Thompson RF, Maity A. Radiotherapy and the tumor microenvironment: mutual influence and clinical implications. Advances in Experimental Medicine and Biology. 772: 147-65. PMID 24272358 DOI: 10.1007/978-1-4614-5915-6_7  0.312
2012 Smith AC, Suzuki M, Thompson R, Choufani S, Higgins MJ, Chiu IW, Squire JA, Greally JM, Weksberg R. Maternal gametic transmission of translocations or inversions of human chromosome 11p15.5 results in regional DNA hypermethylation and downregulation of CDKN1C expression. Genomics. 99: 25-35. PMID 22079941 DOI: 10.1016/J.Ygeno.2011.10.007  0.558
2011 Suzuki M, Oda M, Ramos MP, Pascual M, Lau K, Stasiek E, Agyiri F, Thompson RF, Glass JL, Jing Q, Sandstrom R, Fazzari MJ, Hansen RS, Stamatoyannopoulos JA, McLellan AS, et al. Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome. Genome Research. 21: 1833-40. PMID 21957152 DOI: 10.1101/Gr.116509.110  0.615
2011 Alvarez H, Opalinska J, Zhou L, Sohal D, Fazzari MJ, Yu Y, Montagna C, Montgomery EA, Canto M, Dunbar KB, Wang J, Roa JC, Mo Y, Bhagat T, Ramesh KH, ... ... Thompson RF, et al. Widespread hypomethylation occurs early and synergizes with gene amplification during esophageal carcinogenesis. Plos Genetics. 7: e1001356. PMID 21483804 DOI: 10.1371/Journal.Pgen.1001356  0.614
2011 Acosta D, Suzuki M, Connolly D, Thompson RF, Fazzari MJ, Greally JM, Montagna C. DNA methylation changes in murine breast adenocarcinomas allow the identification of candidate genes for human breast carcinogenesis. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 22: 249-59. PMID 21373886 DOI: 10.1007/S00335-011-9318-6  0.55
2010 Thompson RF, Atzmon G, Gheorghe C, Liang HQ, Lowes C, Greally JM, Barzilai N. Tissue-specific dysregulation of DNA methylation in aging. Aging Cell. 9: 506-18. PMID 20497131 DOI: 10.1111/J.1474-9726.2010.00577.X  0.684
2010 Thompson RF, Fazzari MJ, Niu H, Barzilai N, Simmons RA, Greally JM. Experimental intrauterine growth restriction induces alterations in DNA methylation and gene expression in pancreatic islets of rats. The Journal of Biological Chemistry. 285: 15111-8. PMID 20194508 DOI: 10.1074/Jbc.M109.095133  0.664
2010 Thompson RF, Einstein FH. Epigenetic basis for fetal origins of age-related disease. Journal of Women's Health (2002). 19: 581-7. PMID 20136551 DOI: 10.1089/Jwh.2009.1408  0.306
2010 Einstein F, Thompson RF, Bhagat TD, Fazzari MJ, Verma A, Barzilai N, Greally JM. Cytosine methylation dysregulation in neonates following intrauterine growth restriction. Plos One. 5: e8887. PMID 20126273 DOI: 10.1371/Journal.Pone.0008887  0.63
2010 Thompson RF, Fazzari MJ, Greally JM. Experimental approaches to the study of epigenomic dysregulation in ageing. Experimental Gerontology. 45: 255-68. PMID 20060885 DOI: 10.1016/J.Exger.2009.12.013  0.492
2009 Thompson RF, Suzuki M, Lau KW, Greally JM. A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry. Bioinformatics (Oxford, England). 25: 2164-70. PMID 19561019 DOI: 10.1093/Bioinformatics/Btp382  0.591
2009 Oda M, Glass JL, Thompson RF, Mo Y, Olivier EN, Figueroa ME, Selzer RR, Richmond TA, Zhang X, Dannenberg L, Green RD, Melnick A, Hatchwell E, Bouhassira EE, Verma A, et al. High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers. Nucleic Acids Research. 37: 3829-39. PMID 19386619 DOI: 10.1093/Nar/Gkp260  0.585
2008 Einstein FH, Fishman S, Bauman J, Thompson RF, Huffman DM, Atzmon G, Barzilai N, Muzumdar RH. Enhanced activation of a "nutrient-sensing" pathway with age contributes to insulin resistance. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 22: 3450-7. PMID 18566293 DOI: 10.1096/Fj.08-109041  0.464
2008 Figueroa ME, Reimers M, Thompson RF, Ye K, Li Y, Selzer RR, Fridriksson J, Paietta E, Wiernik P, Green RD, Greally JM, Melnick A. An integrative genomic and epigenomic approach for the study of transcriptional regulation. Plos One. 3: e1882. PMID 18365023 DOI: 10.1371/Journal.Pone.0001882  0.594
2008 Thompson RF, Reimers M, Khulan B, Gissot M, Richmond TA, Chen Q, Zheng X, Kim K, Greally JM. An analytical pipeline for genomic representations used for cytosine methylation studies. Bioinformatics (Oxford, England). 24: 1161-7. PMID 18353789 DOI: 10.1093/Bioinformatics/Btn096  0.582
2008 Gissot M, Choi SW, Thompson RF, Greally JM, Kim K. Toxoplasma gondii and Cryptosporidium parvum lack detectable DNA cytosine methylation. Eukaryotic Cell. 7: 537-40. PMID 18178772 DOI: 10.1128/Ec.00448-07  0.575
2008 Einstein F, Thompson RF, Heo H, Budagov T, Atzmon G, Goffman D, Barzilai N, Montagna C, Greally JM. 600: Abnormal intrauterine growth induces global epigenetic changes in human stem cells American Journal of Obstetrics and Gynecology. 199: S173. DOI: 10.1016/J.Ajog.2008.09.630  0.604
2007 Glass JL, Thompson RF, Khulan B, Figueroa ME, Olivier EN, Oakley EJ, Van Zant G, Bouhassira EE, Melnick A, Golden A, Fazzari MJ, Greally JM. CG dinucleotide clustering is a species-specific property of the genome. Nucleic Acids Research. 35: 6798-807. PMID 17932072 DOI: 10.1093/Nar/Gkm489  0.554
2007 Zhou L, Opalinska J, Sohal D, Thompson R, Li Y, Kotla V, Pahanish P, Parmar S, Kambhampati S, Figueroa M, Ye K, Friedman E, Wickrema A, Melnick A, Greally J, et al. Global Epigenomic Profiling Demonstrates That Myelodysplasia Is Characterized by a Distinct Epigenetic Signature with Aberrant DNA Methylation Changes Involving Various Malignant and Hematopoietic Pathways. Blood. 110: 2436-2436. DOI: 10.1182/Blood.V110.11.2436.2436  0.623
2007 Opalinska J, Daibata M, Sohal D, Zhou L, Thompson R, Pahanish P, Affer M, Figueroa M, Ye K, Greally J, Bai F, List A, Melnick A, Epling-Burnette P, Verma A. Integrated Epigenomic Profiling Reveals Aberrant DNA Hypomethylation in LGL and Demonstrates That a Combination of Genetic and Epigenetic Events Results in Leukemic Evolution in Model of Large Granular Lymphocytic Leukemia. Blood. 110: 2129-2129. DOI: 10.1182/Blood.V110.11.2129.2129  0.62
2007 Sohal D, Opalinska J, Zhou L, Pahanish P, Friedman E, Thompson R, Ye K, Figueroa M, Melnick A, Greally J, List A, Verma A. High Resolution Epigenomic Profiling of Loss of Heterozygosity in MDS Reveals an Important Role of DNA Methylation in Regulating Expression of Genes in the Deleted Regions of Chromosomes 5q, 7q and 20q. Blood. 110: 2120-2120. DOI: 10.1182/Blood.V110.11.2120.2120  0.598
2007 Opalinska J, Sohal D, Thompson R, Zhou L, Li Y, Pahanish P, Kotla V, Kambhampati S, Parmar S, Friedman E, Figueroa M, Ye K, Wickrema A, Melnick A, Greally J, et al. Global DNA Methylation Profiling Demonstrates That Idiopathic Myelofibrosis Is Characterized by a Distinct Epigenetic Signature with Aberrant Methylation Changes in Genes Involved in Inflammation and Hematopoiesis Blood. 110: 1536-1536. DOI: 10.1182/Blood.V110.11.1536.1536  0.625
2006 Khulan B, Thompson RF, Ye K, Fazzari MJ, Suzuki M, Stasiek E, Figueroa ME, Glass JL, Chen Q, Montagna C, Hatchwell E, Selzer RR, Richmond TA, Green RD, Melnick A, et al. Comparative isoschizomer profiling of cytosine methylation: the HELP assay. Genome Research. 16: 1046-55. PMID 16809668 DOI: 10.1101/Gr.5273806  0.608
2006 Thompson RF, Figueroa ME, Melnick AM, Greally JM. Epigenetic Dysregulation of Candidate Cis-Regulatory Sequences in Hematological Malignancies. Blood. 108: 2229-2229. DOI: 10.1182/Blood.V108.11.2229.2229  0.611
Show low-probability matches.