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Hiroshi Matsuo - Publications

Affiliations: 
University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Biochemistry
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Buel GR, Chen X, Myint W, Kayode O, Folimonova V, Cruz A, Skorupka KA, Matsuo H, Walters KJ. E6AP AZUL interaction with UBQLN1/2 in cells, condensates, and an AlphaFold-NMR integrated structure. Structure (London, England : 1993). PMID 36827983 DOI: 10.1016/j.str.2023.01.012  0.332
2021 Maiti A, Hou S, Schiffer CA, Matsuo H. Interactions of APOBEC3s with DNA and RNA. Current Opinion in Structural Biology. 67: 195-204. PMID 33486429 DOI: 10.1016/j.sbi.2020.12.004  0.429
2020 Maiti A, Myint W, Delviks-Frankenberry KA, Hou S, Kanai T, Balachandran V, Sierra Rodriguez C, Tripathi R, Kurt Yilmaz N, Pathak VK, Schiffer CA, Matsuo H. Crystal structure of a soluble APOBEC3G variant suggests ssDNA to bind in a channel that extends between the two domains. Journal of Molecular Biology. PMID 33098858 DOI: 10.1016/j.jmb.2020.10.020  0.451
2019 Solomon WC, Myint W, Hou S, Kanai T, Tripathi R, Kurt Yilmaz N, Schiffer CA, Matsuo H. Mechanism for APOBEC3G catalytic exclusion of RNA and non-substrate DNA. Nucleic Acids Research. 47: 7676-7689. PMID 31424549 DOI: 10.1093/Nar/Gkz550  0.342
2018 Hou S, Silvas T, Leidner F, Nalivaika EA, Matsuo H, Kurt Yilmaz N, Schiffer CA. Structural analysis of the active site and DNA binding of human cytidine deaminase APOBEC3B. Journal of Chemical Theory and Computation. PMID 30457868 DOI: 10.1021/Acs.Jctc.8B00545  0.433
2018 Maiti A, Myint W, Kanai T, Delviks-Frankenberry K, Sierra Rodriguez C, Pathak VK, Schiffer CA, Matsuo H. Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA. Nature Communications. 9: 2460. PMID 29941968 DOI: 10.1038/S41467-018-04872-8  0.424
2018 Silvas TV, Hou S, Myint W, Nalivaika E, Somasundaran M, Kelch BA, Matsuo H, Kurt Yilmaz N, Schiffer CA. Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions. Scientific Reports. 8: 7511. PMID 29760455 DOI: 10.1038/S41598-018-25881-Z  0.372
2017 Kouno T, Silvas TV, Hilbert BJ, Shandilya SMD, Bohn MF, Kelch BA, Royer WE, Somasundaran M, Kurt Yilmaz N, Matsuo H, Schiffer CA. Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity. Nature Communications. 8: 15024. PMID 28452355 DOI: 10.1038/Ncomms15024  0.463
2015 Kouno T, Luengas EM, Shigematsu M, Shandilya SM, Zhang J, Chen L, Hara M, Schiffer CA, Harris RS, Matsuo H. Structure of the Vif-binding domain of the antiviral enzyme APOBEC3G. Nature Structural & Molecular Biology. 22: 485-91. PMID 25984970 DOI: 10.1038/Nsmb.3033  0.549
2013 Bohn MF, Shandilya SM, Albin JS, Kouno T, Anderson BD, McDougle RM, Carpenter MA, Rathore A, Evans L, Davis AN, Zhang J, Lu Y, Somasundaran M, Matsuo H, Harris RS, et al. Crystal structure of the DNA cytosine deaminase APOBEC3F: the catalytically active and HIV-1 Vif-binding domain. Structure (London, England : 1993). 21: 1042-50. PMID 23685212 DOI: 10.1016/J.Str.2013.04.010  0.546
2013 Harjes S, Solomon WC, Li M, Chen KM, Harjes E, Harris RS, Matsuo H. Impact of H216 on the DNA binding and catalytic activities of the HIV restriction factor APOBEC3G. Journal of Virology. 87: 7008-14. PMID 23596292 DOI: 10.1128/Jvi.03173-12  0.715
2013 Albin JS, Anderson JS, Johnson JR, Harjes E, Matsuo H, Krogan NJ, Harris RS. Dispersed sites of HIV Vif-dependent polyubiquitination in the DNA deaminase APOBEC3F. Journal of Molecular Biology. 425: 1172-82. PMID 23318957 DOI: 10.1016/J.Jmb.2013.01.010  0.344
2012 Shindo K, Li M, Gross PJ, Brown WL, Harjes E, Lu Y, Matsuo H, Harris RS. A Comparison of Two Single-Stranded DNA Binding Models by Mutational Analysis of APOBEC3G. Biology. 1: 260-76. PMID 24832226 DOI: 10.3390/Biology1020260  0.536
2012 Fukunishi Y, Hongo S, Lintuluoto M, Matsuo H. Free Energy Profile of APOBEC3G Protein Calculated by a Molecular Dynamics Simulation. Biology. 1: 245-59. PMID 24832225 DOI: 10.3390/Biology1020245  0.408
2012 Chiba J, Kouno T, Aoki S, Sato H, Zhang J, Matsuo H, Inouye M. Electrochemical direct detection of DNA deamination catalyzed by APOBEC3G. Chemical Communications (Cambridge, England). 48: 12115-7. PMID 23145435 DOI: 10.1039/C2Cc36779C  0.39
2012 Harjes E, Kitamura A, Zhao W, Morais MC, Jardine PJ, Grimes S, Matsuo H. Structure of the RNA claw of the DNA packaging motor of bacteriophage Φ29. Nucleic Acids Research. 40: 9953-63. PMID 22879380 DOI: 10.1093/Nar/Gks724  0.465
2012 Dewan V, Liu T, Chen KM, Qian Z, Xiao Y, Kleiman L, Mahasenan KV, Li C, Matsuo H, Pei D, Musier-Forsyth K. Cyclic peptide inhibitors of HIV-1 capsid-human lysyl-tRNA synthetase interaction. Acs Chemical Biology. 7: 761-9. PMID 22276994 DOI: 10.1021/Cb200450W  0.669
2011 Dang Y, Abudu A, Son S, Harjes E, Spearman P, Matsuo H, Zheng YH. Identification of a single amino acid required for APOBEC3 antiretroviral cytidine deaminase activity. Journal of Virology. 85: 5691-5. PMID 21430060 DOI: 10.1128/Jvi.00243-11  0.425
2010 Albin JS, LaRue RS, Weaver JA, Brown WL, Shindo K, Harjes E, Matsuo H, Harris RS. A single amino acid in human APOBEC3F alters susceptibility to HIV-1 Vif. The Journal of Biological Chemistry. 285: 40785-92. PMID 20971849 DOI: 10.1074/Jbc.M110.173161  0.369
2010 Shandilya SM, Nalam MN, Nalivaika EA, Gross PJ, Valesano JC, Shindo K, Li M, Munson M, Royer WE, Harjes E, Kono T, Matsuo H, Harris RS, Somasundaran M, Schiffer CA. Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces. Structure (London, England : 1993). 18: 28-38. PMID 20152150 DOI: 10.1016/J.Str.2009.10.016  0.534
2009 Harjes E, Gross PJ, Chen KM, Lu Y, Shindo K, Nowarski R, Gross JD, Kotler M, Harris RS, Matsuo H. An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model. Journal of Molecular Biology. 389: 819-32. PMID 19389408 DOI: 10.1016/J.Jmb.2009.04.031  0.751
2008 Stenglein MD, Matsuo H, Harris RS. Two regions within the amino-terminal half of APOBEC3G cooperate to determine cytoplasmic localization. Journal of Virology. 82: 9591-9. PMID 18667511 DOI: 10.1128/Jvi.02471-07  0.417
2008 Chen KM, Harjes E, Gross PJ, Fahmy A, Lu Y, Shindo K, Harris RS, Matsuo H. Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G. Nature. 452: 116-9. PMID 18288108 DOI: 10.1038/Nature06638  0.751
2008 Devany M, Kappes F, Chen KM, Markovitz DM, Matsuo H. Solution NMR structure of the N-terminal domain of the human DEK protein. Protein Science : a Publication of the Protein Society. 17: 205-15. PMID 18227428 DOI: 10.1110/Ps.073244108  0.723
2008 Kitamura A, Jardine PJ, Anderson DL, Grimes S, Matsuo H. Analysis of intermolecular base pair formation of prohead RNA of the phage phi29 DNA packaging motor using NMR spectroscopy. Nucleic Acids Research. 36: 839-48. PMID 18084020 DOI: 10.1093/Nar/Gkm874  0.409
2007 Chen KM, Martemyanova N, Lu Y, Shindo K, Matsuo H, Harris RS. Extensive mutagenesis experiments corroborate a structural model for the DNA deaminase domain of APOBEC3G. Febs Letters. 581: 4761-6. PMID 17869248 DOI: 10.1016/J.Febslet.2007.08.076  0.767
2007 Kovaleski BJ, Kennedy R, Khorchid A, Kleiman L, Matsuo H, Musier-Forsyth K. Critical role of helix 4 of HIV-1 capsid C-terminal domain in interactions with human lysyl-tRNA synthetase Journal of Biological Chemistry. 282: 32274-32279. PMID 17724017 DOI: 10.1074/Jbc.M706256200  0.38
2006 Wise-Draper TM, Allen HV, Jones EE, Habash KB, Matsuo H, Wells SI. Apoptosis inhibition by the human DEK oncoprotein involves interference with p53 functions. Molecular and Cellular Biology. 26: 7506-19. PMID 16894028 DOI: 10.1128/Mcb.00430-06  0.301
2006 Harris RS, Matsuo H. Dancin' deaminase. Nature Structural & Molecular Biology. 13: 380-1. PMID 16738602 DOI: 10.1038/nsmb0506-380  0.331
2005 Devany M, Kotharu NP, Matsuo H. Expression and isotopic labeling of structural domains of the human protein DEK. Protein Expression and Purification. 40: 244-7. PMID 15766865 DOI: 10.1016/J.Pep.2004.07.008  0.78
2005 Böhm F, Kappes F, Scholten I, Richter N, Matsuo H, Knippers R, Waldmann T. The SAF-box domain of chromatin protein DEK. Nucleic Acids Research. 33: 1101-10. PMID 15722484 DOI: 10.1093/Nar/Gki258  0.537
2005 Devany M, Matsuo H. NMR resonance assignments for the DNA-supercoiling domain of the human protein DEK. Journal of Biomolecular Nmr. 31: 65. PMID 15692740 DOI: 10.1007/S10858-004-6889-5  0.765
2004 Devany M, Kotharu NP, Matsuo H. Solution NMR structure of the C-terminal domain of the human protein DEK. Protein Science : a Publication of the Protein Society. 13: 2252-9. PMID 15238633 DOI: 10.1110/Ps.04797104  0.779
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