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Michael D. Grabe - Publications

Affiliations: 
2002 University of California, Berkeley, Berkeley, CA, United States 
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76/121 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Khan F, Elgeti M, Grandfield S, Paz A, Naughton FB, Marcoline FV, Althoff T, Ermolova N, Wright EM, Hubbell WL, Grabe M, Abramson J. Membrane potential accelerates sugar uptake by stabilizing the outward facing conformation of the Na/glucose symporter vSGLT. Nature Communications. 14: 7511. PMID 37980423 DOI: 10.1038/s41467-023-43119-z  0.319
2020 Zhou YC, Argudo D, Marcoline F, Grabe M. A Computational Model of Protein Induced Membrane Morphology with Geodesic Curvature Driven Protein-Membrane Interface. Journal of Computational Physics. 422. PMID 32921806 DOI: 10.1016/J.Jcp.2020.109755  0.367
2020 Bisignano P, Lee MA, George A, Zuckerman DM, Grabe M, Rosenberg JM. A kinetic mechanism for enhanced selectivity of membrane transport. Plos Computational Biology. 16: e1007789. PMID 32614861 DOI: 10.1371/Journal.Pcbi.1007789  0.387
2020 George A, Bisignano P, Rosenberg JM, Grabe M, Zuckerman DM. A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms. Plos Computational Biology. 16: e1007884. PMID 32614821 DOI: 10.1371/Journal.Pcbi.1007884  0.356
2020 Grabe M, Zuckerman DM, Rosenberg JM. EmrE reminds us to expect the unexpected in membrane transport. The Journal of General Physiology. 152. PMID 31816640 DOI: 10.1085/Jgp.201912467  0.378
2019 Singh A, Marcoline FV, Veshaguri S, Kao AW, Bruchez M, Mindell JA, Stamou D, Grabe M. Protons in small spaces: Discrete simulations of vesicle acidification. Plos Computational Biology. 15: e1007539. PMID 31869334 DOI: 10.1371/Journal.Pcbi.1007539  0.362
2019 Guerriero CJ, Gomez YK, Daskivich GJ, Reutter KR, Augustine AA, Weiberth KF, Nakatsukasa K, Grabe M, Brodsky JL. Harmonizing Experimental Data with Modeling to Predict Membrane Protein Insertion in Yeast. Biophysical Journal. PMID 31399214 DOI: 10.1016/J.Bpj.2019.07.013  0.347
2019 Argudo D, Capponi S, Bethel NP, Grabe M. A multiscale model of mechanotransduction by the ankyrin chains of the NOMPC channel. The Journal of General Physiology. PMID 30728217 DOI: 10.1085/Jgp.201812266  0.35
2019 Han TW, Ye W, Bethel NP, Zubia M, Kim A, Li KH, Burlingame AL, Grabe M, Jan YN, Jan LY. Chemically induced vesiculation as a platform for studying TMEM16F activity. Proceedings of the National Academy of Sciences of the United States of America. PMID 30622179 DOI: 10.1073/Pnas.1817498116  0.355
2018 Bisignano P, Ghezzi C, Jo H, Polizzi NF, Althoff T, Kalyanaraman C, Friemann R, Jacobson MP, Wright EM, Grabe M. Inhibitor binding mode and allosteric regulation of Na-glucose symporters. Nature Communications. 9: 5245. PMID 30532032 DOI: 10.1038/S41467-018-07700-1  0.366
2018 Bokoch MP, Jo H, Valcourt JR, Srinivasan Y, Pan AC, Capponi S, Grabe M, Dror RO, Shaw DE, DeGrado WF, Coughlin SR. Entry from the lipid bilayer: a possible pathway for inhibition of a peptide G protein-coupled receptor by a lipophilic small molecule. Biochemistry. PMID 30102523 DOI: 10.1021/Acs.Biochem.8B00577  0.318
2018 Wahlgren WY, Dunevall E, North RA, Paz A, Scalise M, Bisignano P, Bengtsson-Palme J, Goyal P, Claesson E, Caing-Carlsson R, Andersson R, Beis K, Nilsson UJ, Farewell A, Pochini L, ... ... Grabe M, et al. Substrate-bound outward-open structure of a Na-coupled sialic acid symporter reveals a new Na site. Nature Communications. 9: 1753. PMID 29717135 DOI: 10.1038/S41467-018-04045-7  0.332
2018 Paz A, Claxton DP, Kumar JP, Kazmier K, Bisignano P, Sharma S, Nolte SA, Liwag TM, Nayak V, Wright EM, Grabe M, Mchaourab HS, Abramson J. Conformational transitions of the sodium-dependent sugar transporter, vSGLT. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507231 DOI: 10.1073/Pnas.1718451115  0.387
2018 Peters CJ, Gilchrist JM, Tien J, Bethel NP, Qi L, Chen T, Wang L, Jan YN, Grabe M, Jan LY. The Sixth Transmembrane Segment Is a Major Gating Component of the TMEM16A Calcium-Activated Chloride Channel. Neuron. PMID 29478917 DOI: 10.1016/J.Neuron.2018.01.048  0.354
2018 Han TW, Ye W, Bethel NP, Zubia M, Grabe M, Nung Jan Y, Jan LY. TMEM16F is a Calcium-Activated Phospholipid Scramblase Required for Chemically-Induced Giant Plasma Membrane Vesicles Biophysical Journal. 114: 610a. DOI: 10.1016/J.Bpj.2017.11.3335  0.308
2018 Grabe M, Bethel N. Mathematical Models of Protein Induced Membrane Deformation Biophysical Journal. 114: 609a. DOI: 10.1016/J.Bpj.2017.11.3328  0.345
2018 Bethel NP, Capponi S, Rosenberg JM, Grabe M. Measuring the Kinetics of Ion Permeation in Low Conductance Ion Channels Biophysical Journal. 114: 546a. DOI: 10.1016/J.Bpj.2017.11.2983  0.318
2018 Argudo D, Grabe M, Bethel N, Marcoline F. New Continuum Approaches to Study how Arbitrary Shape Proteins Induce Membrane Deformations Biophysical Journal. 114: 460a. DOI: 10.1016/J.Bpj.2017.11.2539  0.331
2017 Bergdoll LA, Lerch MT, Patrick JW, Belardo K, Altenbach C, Bisignano P, Laganowsky A, Grabe M, Hubbell WL, Abramson J. Protonation state of glutamate 73 regulates the formation of a specific dimeric association of mVDAC1. Proceedings of the National Academy of Sciences of the United States of America. PMID 29279396 DOI: 10.1073/Pnas.1715464115  0.355
2017 Guerriero CJ, Reutter KR, Augustine AA, Preston GM, Weiberth KF, Mackie TD, Cleveland-Rubeor HC, Bethel NP, Callenberg KM, Nakatsukasa K, Grabe M, Brodsky JL. Transmembrane helix hydrophobicity is an energetic barrier during the retrotranslocation of integral membrane ERAD substrates. Molecular Biology of the Cell. PMID 28539401 DOI: 10.1091/Mbc.E17-03-0184  0.391
2017 Argudo D, Bethel NP, Marcoline FV, Wolgemuth CW, Grabe M. New Continuum Approaches for Determining Protein-Induced Membrane Deformations. Biophysical Journal. 112: 2159-2172. PMID 28538153 DOI: 10.1016/J.Bpj.2017.03.040  0.461
2017 Bisignano P, Kalyanaraman C, Ghezzi C, Wright EM, Abramson J, Paz A, Jacobson MP, Friemann R, Grabe M. Structural Insights into Sodium-Dependent Sugar Transporters and their Inhibition Mechanism Biophysical Journal. 112: 128a. DOI: 10.1016/J.Bpj.2016.11.714  0.378
2017 Capponi S, Adelman J, Rosenberg J, Grabe M. Weighted Ensemble Approach to In Silico Measure the I-V Relationship in a K + Ion Channel Biophysical Journal. 112: 543a. DOI: 10.1016/J.Bpj.2016.11.2933  0.301
2017 Bergdoll LA, Lerch MT, Belardo K, Altenbach C, Bisignano P, Grabe M, Hubbell W, Abramson J. Ph-Induced Oligomerization of the Voltage Dependent Anion Channel Biophysical Journal. 112: 184a. DOI: 10.1016/J.Bpj.2016.11.1018  0.361
2016 Bethel NP, Grabe M. Atomistic insight into lipid translocation by a TMEM16 scramblase. Proceedings of the National Academy of Sciences of the United States of America. PMID 27872308 DOI: 10.1073/Pnas.1607574113  0.397
2016 Marcoline FV, Ishida Y, Mindell JA, Nayak S, Grabe M. A mathematical model of osteoclast acidification during bone resorption. Bone. PMID 27650914 DOI: 10.1016/J.Bone.2016.09.007  0.368
2016 Adelman JL, Ghezzi C, Bisignano P, Loo DD, Choe S, Abramson J, Rosenberg JM, Wright EM, Grabe M. Stochastic steps in secondary active sugar transport. Proceedings of the National Academy of Sciences of the United States of America. PMID 27325773 DOI: 10.1073/Pnas.1525378113  0.384
2016 Veshaguri S, Christensen SM, Kemmer GC, Ghale G, Møller MP, Lohr C, Christensen AL, Justesen BH, Jørgensen IL, Schiller J, Hatzakis NS, Grabe M, Pomorski TG, Stamou D. Direct observation of proton pumping by a eukaryotic P-type ATPase. Science (New York, N.Y.). 351: 1469-73. PMID 27013734 DOI: 10.1126/Science.Aad6429  0.364
2016 Argudo D, Bethel NP, Marcoline FV, Grabe M. Continuum descriptions of membranes and their interaction with proteins: towards chemically accurate models. Biochimica Et Biophysica Acta. PMID 26853937 DOI: 10.1016/J.Bbamem.2016.02.003  0.404
2016 Veshaguri S, Christensen SM, Kemmer GC, Møller MP, Ghale G, Lohr C, Christensen AL, Justesen BH, Jørgensen IL, Schiller J, Hatzakis NS, Grabe M, Pomorski TG, Stamou D. Resolving Active Ion Transport at the Single Molecule Level for the First Time Biophysical Journal. 110: 179a. DOI: 10.1016/J.Bpj.2015.11.997  0.397
2016 Bisignano P, Kalyanaraman C, Wright E, Abramson J, Jacobson M, Grabe M. Structure-Based Drug Design for Sodium-Dependent Glucose Transporters Biophysical Journal. 110: 136a. DOI: 10.1016/J.Bpj.2015.11.779  0.316
2015 Adelman JL, Grabe M. Simulating current-voltage relationships for a narrow ion channel using the weighted ensemble method. Journal of Chemical Theory and Computation. 11: 1907-1918. PMID 26392816 DOI: 10.1021/Ct501134S  0.395
2015 Marcoline FV, Bethel N, Guerriero CJ, Brodsky JL, Grabe M. Membrane Protein Properties Revealed through Data-Rich Electrostatics Calculations. Structure (London, England : 1993). 23: 1526-37. PMID 26118532 DOI: 10.1016/J.Str.2015.05.014  0.43
2014 Joh NH, Wang T, Bhate MP, Acharya R, Wu Y, Grabe M, Hong M, Grigoryan G, DeGrado WF. De novo design of a transmembrane Zn²⁺-transporting four-helix bundle. Science (New York, N.Y.). 346: 1520-4. PMID 25525248 DOI: 10.1126/Science.1261172  0.399
2014 Choudhary OP, Paz A, Adelman JL, Colletier JP, Abramson J, Grabe M. Structure-guided simulations illuminate the mechanism of ATP transport through VDAC1. Nature Structural & Molecular Biology. 21: 626-32. PMID 24908397 DOI: 10.1038/Nsmb.2841  0.422
2014 Hong T, Yang H, Zhang SS, Cho HC, Kalashnikova M, Sun B, Zhang H, Bhargava A, Grabe M, Olgin J, Gorelik J, Marbán E, Jan LY, Shaw RM. Cardiac BIN1 folds T-tubule membrane, controlling ion flux and limiting arrhythmia. Nature Medicine. 20: 624-32. PMID 24836577 DOI: 10.1038/Nm.3543  0.314
2014 Adelman JL, Sheng Y, Choe S, Abramson J, Wright EM, Rosenberg JM, Grabe M. Structural determinants of water permeation through the sodium-galactose transporter vSGLT. Biophysical Journal. 106: 1280-9. PMID 24655503 DOI: 10.1016/J.Bpj.2014.01.006  0.391
2014 Latorraca NR, Callenberg KM, Boyle JP, Grabe M. Continuum approaches to understanding ion and peptide interactions with the membrane. The Journal of Membrane Biology. 247: 395-408. PMID 24652510 DOI: 10.1007/S00232-014-9646-Z  0.406
2014 Mukherjee S, Zheng H, Derebe MG, Callenberg KM, Partch CL, Rollins D, Propheter DC, Rizo J, Grabe M, Jiang QX, Hooper LV. Antibacterial membrane attack by a pore-forming intestinal C-type lectin. Nature. 505: 103-7. PMID 24256734 DOI: 10.1038/Nature12729  0.365
2014 Choudhary OP, Paz A, Adelman J, Colletier J, Abramson J, Grabe M. Characterizing ATP Permeation through the Voltage-Dependent Anion Channel VDAC Biophysical Journal. 106: 147a-148a. DOI: 10.1016/J.Bpj.2013.11.851  0.391
2014 Adelman JL, Grabe M. Simulating Current-Voltage Relationships for a Simple Ion Channel with All-Atom Resolution using the Weighted Ensemble Method Biophysical Journal. 106: 805a. DOI: 10.1016/J.Bpj.2013.11.4411  0.397
2014 Pendse P, Choe S, Adelman J, Abramson J, Wright E, Rosenberg J, Grabe M. Energetics of Urea Permeation through Sodium-Dependent Galactose Cotransporter vSGLT Biophysical Journal. 106: 365a. DOI: 10.1016/J.Bpj.2013.11.2072  0.361
2014 Adelman JL, Sheng Y, Choe S, Abramson J, Wright EM, Grabe M. Insight into the Mechanism of Water Permeation through the Sodium-Galactose Transporter vSGLT from Long Molecular Dynamics Simulations Biophysical Journal. 106: 365a. DOI: 10.1016/J.Bpj.2013.11.2071  0.366
2014 Latorraca NR, Callenberg KM, Boyle JP, Grabe M. Exploring Continuum Models of Ion and Peptide Interactions with the Membrane Biophysical Journal. 106: 222a. DOI: 10.1016/J.Bpj.2013.11.1301  0.408
2013 Ishida Y, Nayak S, Mindell JA, Grabe M. A model of lysosomal pH regulation. The Journal of General Physiology. 141: 705-20. PMID 23712550 DOI: 10.1085/Jgp.201210930  0.382
2012 Callenberg KM, Latorraca NR, Grabe M. Membrane bending is critical for the stability of voltage sensor segments in the membrane. The Journal of General Physiology. 140: 55-68. PMID 22732310 DOI: 10.1085/Jgp.201110766  0.423
2012 Callenberg KM, Choudhary OP, de Forest GL, Gohara DW, Baker NA, Grabe M. APBSmem: A Tool for the Analysis of Membrane Protein Electrostatics Biophysical Journal. 102: 682a. DOI: 10.1016/J.Bpj.2011.11.3706  0.418
2012 Adelman JL, Dale AL, Zwier MC, Bhatt D, Chong LT, Zuckerman DM, Grabe M. Insight into the Alternating Access Mechanism of the Sodium Symporter Mhp1 using Path Sampling Simulations Biophysical Journal. 102: 661a-662a. DOI: 10.1016/J.Bpj.2011.11.3604  0.405
2012 Choe S, Adelman JL, Rosenberg JM, Wright EM, Abramson J, Grabe M. Understanding Substrate Unbinding from the Sodium-Galactose Co-Transporter vSGLT based on 16 Microseconds of Molecular Simulation Biophysical Journal. 102: 661a. DOI: 10.1016/J.Bpj.2011.11.3603  0.369
2012 Latorraca NR, Callenberg KM, Grabe M. Exploring the Energetics of Membrane Protein Stability using a Deformable Model of the Membrane Biophysical Journal. 102: 622a. DOI: 10.1016/J.Bpj.2011.11.3390  0.439
2012 Choudhary OP, Adelman J, Abramson J, Grabe M. Characterizing ATP Permeation through mVDAC1 using Markov State Models (MSMs) Biophysical Journal. 102: 550a. DOI: 10.1016/J.Bpj.2011.11.3002  0.384
2012 Onyeozili NO, Callenberg KM, Xiao SC, Boyle JP, Grabe M. Determining the Binding Affinity of Toxoplasma ROP Proteins to a Membrane using Free Energy Calculations Biophysical Journal. 102: 472a. DOI: 10.1016/J.Bpj.2011.11.2588  0.406
2011 Adelman JL, Dale AL, Zwier MC, Bhatt D, Chong LT, Zuckerman DM, Grabe M. Simulations of the alternating access mechanism of the sodium symporter Mhp1. Biophysical Journal. 101: 2399-407. PMID 22098738 DOI: 10.1016/J.Bpj.2011.09.061  0.4
2011 Kashlan OB, Adelman JL, Okumura S, Blobner BM, Zuzek Z, Hughey RP, Kleyman TR, Grabe M. Constraint-based, homology model of the extracellular domain of the epithelial Na+ channel α subunit reveals a mechanism of channel activation by proteases. The Journal of Biological Chemistry. 286: 649-60. PMID 20974852 DOI: 10.1074/Jbc.M110.167098  0.385
2010 Watanabe A, Choe S, Chaptal V, Rosenberg JM, Wright EM, Grabe M, Abramson J. The mechanism of sodium and substrate release from the binding pocket of vSGLT. Nature. 468: 988-91. PMID 21131949 DOI: 10.1038/Nature09580  0.409
2010 Callenberg KM, Choudhary OP, de Forest GL, Gohara DW, Baker NA, Grabe M. APBSmem: a graphical interface for electrostatic calculations at the membrane. Plos One. 5. PMID 20949122 DOI: 10.1371/Journal.Pone.0012722  0.361
2010 Choe S, Rosenberg JM, Abramson J, Wright EM, Grabe M. Water permeation through the sodium-dependent galactose cotransporter vSGLT. Biophysical Journal. 99: L56-8. PMID 20923633 DOI: 10.1016/J.Bpj.2010.08.055  0.318
2010 Bailey MA, Grabe M, Devor DC. Characterization of the PCMBS-dependent modification of KCa3.1 channel gating. The Journal of General Physiology. 136: 367-87. PMID 20837673 DOI: 10.1085/Jgp.201010430  0.369
2010 Kashlan OB, Boyd CR, Argyropoulos C, Okumura S, Hughey RP, Grabe M, Kleyman TR. Allosteric inhibition of the epithelial Na+ channel through peptide binding at peripheral finger and thumb domains. The Journal of Biological Chemistry. 285: 35216-23. PMID 20817728 DOI: 10.1074/Jbc.M110.167064  0.342
2010 Choudhary OP, Ujwal R, Kowallis W, Coalson R, Abramson J, Grabe M. The electrostatics of VDAC: implications for selectivity and gating. Journal of Molecular Biology. 396: 580-92. PMID 20005234 DOI: 10.1016/J.Jmb.2009.12.006  0.392
2010 Choe S, Rosenberg J, Wright E, Abramson J, Grabe M. Computational Approaches to Understanding the Mechanism of Transport in the Na+/Galactose Co-Transporter vSGLT Biophysical Journal. 98: 434a. DOI: 10.1016/J.Bpj.2009.12.2355  0.405
2009 Choe S, Grabe M. Conformational dynamics of the inner pore helix of voltage-gated potassium channels. The Journal of Chemical Physics. 130: 215103. PMID 19508102 DOI: 10.1063/1.3138906  0.375
2008 Choe S, Hecht KA, Grabe M. A continuum method for determining membrane protein insertion energies and the problem of charged residues. The Journal of General Physiology. 131: 563-73. PMID 18474636 DOI: 10.1085/Jgp.200809959  0.398
2007 Grabe M, Lai HC, Jain M, Jan YN, Jan LY. Structure prediction for the down state of a potassium channel voltage sensor. Nature. 445: 550-3. PMID 17187053 DOI: 10.1038/Nature05494  0.362
2006 Bichet D, Grabe M, Jan YN, Jan LY. Electrostatic interactions in the channel cavity as an important determinant of potassium channel selectivity. Proceedings of the National Academy of Sciences of the United States of America. 103: 14355-60. PMID 16983069 DOI: 10.1073/Pnas.0606660103  0.375
2006 Grabe M, Bichet D, Qian X, Jan YN, Jan LY. K+ channel selectivity depends on kinetic as well as thermodynamic factors. Proceedings of the National Academy of Sciences of the United States of America. 103: 14361-6. PMID 16983068 DOI: 10.1073/Pnas.0606662103  0.375
2005 Lai HC, Grabe M, Jan YN, Jan LY. The S4 voltage sensor packs against the pore domain in the KAT1 voltage-gated potassium channel. Neuron. 47: 395-406. PMID 16055063 DOI: 10.1016/J.Neuron.2005.06.019  0.354
2004 Grabe M, Lecar H, Jan YN, Jan LY. A quantitative assessment of models for voltage-dependent gating of ion channels. Proceedings of the National Academy of Sciences of the United States of America. 101: 17640-5. PMID 15591352 DOI: 10.1073/Pnas.0408116101  0.417
2003 Lecar H, Larsson HP, Grabe M. Electrostatic model of S4 motion in voltage-gated ion channels. Biophysical Journal. 85: 2854-64. PMID 14581190 DOI: 10.1016/S0006-3495(03)74708-0  0.38
2003 Cohen BE, Grabe M, Jan LY. Answers and questions from the KvAP structures. Neuron. 39: 395-400. PMID 12895415 DOI: 10.1016/S0896-6273(03)00472-0  0.34
2003 Grabe M, Neu J, Oster G, Nollert P. Protein interactions and membrane geometry. Biophysical Journal. 84: 854-68. PMID 12547769 DOI: 10.1016/S0006-3495(03)74904-2  0.365
2002 Moore HP, Andresen JM, Eaton BA, Grabe M, Haugwitz M, Wu MM, Machen TE. Biosynthesis and secretion of pituitary hormones: dynamics and regulation. Archives of Physiology and Biochemistry. 110: 16-25. PMID 11935396 DOI: 10.1076/Apab.110.1.16.903  0.362
2001 Wu MM, Grabe M, Adams S, Tsien RY, Moore HP, Machen TE. Mechanisms of pH regulation in the regulated secretory pathway. The Journal of Biological Chemistry. 276: 33027-35. PMID 11402049 DOI: 10.1074/Jbc.M103917200  0.311
2001 Grabe M, Oster G. Regulation of organelle acidity. The Journal of General Physiology. 117: 329-44. PMID 11279253 DOI: 10.1085/Jgp.117.4.329  0.394
2000 Oster G, Wang H, Grabe M. How Fo-ATPase generates rotary torque. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 355: 523-8. PMID 10836505 DOI: 10.1098/Rstb.2000.0593  0.315
2000 Grabe M, Wang H, Oster G. The mechanochemistry of V-ATPase proton pumps. Biophysical Journal. 78: 2798-813. PMID 10827963 DOI: 10.1016/S0006-3495(00)76823-8  0.326
Low-probability matches (unlikely to be authored by this person)
2013 Adelman JL, Grabe M. Efficient Simulation of Complex Transition Pathways using a Weighted Ensemble Based String Method Biophysical Journal. 104: 504a. DOI: 10.1016/J.Bpj.2012.11.2781  0.298
2019 Capponi S, Argudo D, Bethel N, Grabe M. Force Transduction in the NOMPC Mechanosensitive Channel Biophysical Journal. 116: 535a. DOI: 10.1016/J.Bpj.2018.11.2879  0.295
2015 Zwier MC, Adelman JL, Kaus JW, Pratt AJ, Wong KF, Rego NB, Suárez E, Lettieri S, Wang DW, Grabe M, Zuckerman DM, Chong LT. WESTPA: An interoperable, highly scalable software package for weighted ensemble simulation and analysis. Journal of Chemical Theory and Computation. 11: 800-809. PMID 26392815 DOI: 10.1021/Ct5010615  0.291
2018 Bisignano P, Capponi S, Rosenberg JM, Grabe M. Conformational Landscape of Sodium Glucose Transporters Biophysical Journal. 114: 558a. DOI: 10.1016/J.Bpj.2017.11.3052  0.29
2022 Frost A, Moss FR, Lincoff J, Tucker M, Mohammed A, Grabe M. Molecular-scale structure of a high-curvature membrane. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 35553093 DOI: 10.1096/fasebj.2022.36.S1.0I126  0.277
2013 Adelman JL, Grabe M. Simulating rare events using a weighted ensemble-based string method. The Journal of Chemical Physics. 138: 044105. PMID 23387566 DOI: 10.1063/1.4773892  0.276
2019 George A, Grabe M, Rosenberg JM, Zuckerman DM. What is Your Machine Really Doing? Systematic Exploration of Alternative Mechanisms as Applied to Transport Biophysical Journal. 116: 127a-128a. DOI: 10.1016/J.Bpj.2018.11.708  0.273
2001 Chandy G, Grabe M, Moore HP, Machen TE. Proton leak and CFTR in regulation of Golgi pH in respiratory epithelial cells. American Journal of Physiology. Cell Physiology. 281: C908-21. PMID 11502568 DOI: 10.1152/Ajpcell.2001.281.3.C908  0.272
2021 Stockbridge RB, Gaudet R, Grabe M, Minor DL. Inroads into membrane physiology through transport nanomachines. Journal of Molecular Biology. 167101. PMID 34119492 DOI: 10.1016/j.jmb.2021.167101  0.271
2018 Bergdoll LA, Lerch MT, Patrick JW, Altenbach C, Bisignano P, Laganowsky A, Grabe M, Hubbell W, Abramson J. Protonation State of Glutamate 73 Regulates the Formation of a Unique Dimeric Association of VDAC1 Biophysical Journal. 114: 378a. DOI: 10.1016/J.Bpj.2017.11.2093  0.269
1995 Curry WB, Grabe MD, Kurnikov IV, Skourtis SS, Beratan DN, Regan JJ, Aquino AJ, Beroza P, Onuchic JN. Pathways, pathway tubes, pathway docking, and propagators in electron transfer proteins. Journal of Bioenergetics and Biomembranes. 27: 285-93. PMID 8847342 DOI: 10.1007/Bf02110098  0.266
2008 Krzysiak TC, Grabe M, Gilbert SP. Getting in sync with dimeric Eg5. Initiation and regulation of the processive run. The Journal of Biological Chemistry. 283: 2078-87. PMID 18037705 DOI: 10.1074/Jbc.M708354200  0.264
1999 Dimroth P, Wang H, Grabe M, Oster G. Energy transduction in the sodium F-ATPase of Propionigenium modestum. Proceedings of the National Academy of Sciences of the United States of America. 96: 4924-9. PMID 10220395 DOI: 10.1073/Pnas.96.9.4924  0.257
2019 Bisignano P, Capponi S, Rosenberg JM, Grabe M. Quantitative Simulations of Alternating Access in Sodium-Solute Symporters Biophysical Journal. 116: 554a. DOI: 10.1016/J.Bpj.2018.11.2978  0.25
2018 Raleigh DR, Sever N, Choksi PK, Sigg MA, Hines KM, Thompson BM, Elnatan D, Jaishankar P, Bisignano P, Garcia-Gonzalo FR, Krup AL, Eberl M, Byrne EFX, Siebold C, Wong SY, ... ... Grabe M, et al. Cilia-Associated Oxysterols Activate Smoothened. Molecular Cell. 72: 316-327.e5. PMID 30340023 DOI: 10.1016/J.Molcel.2018.08.034  0.239
2023 Moss FR, Lincoff J, Tucker M, Mohammed A, Grabe M, Frost A. Brominated lipid probes expose structural asymmetries in constricted membranes. Nature Structural & Molecular Biology. PMID 36624348 DOI: 10.1038/s41594-022-00898-1  0.239
2014 Sun J, Grabe M. The Role of Cooperativity in Cell Signaling Biophysical Journal. 106: 377a. DOI: 10.1016/J.Bpj.2013.11.2135  0.229
2019 Igoshin OA, Chen J, Xing J, Liu J, Elston TC, Grabe M, Kim KS, Nirody JA, Rangamani P, Sun SX, Wang H, Wolgemuth C. Biophysics at the coffee shop: lessons learned working with George Oster. Molecular Biology of the Cell. 30: 1882-1889. PMID 31322997 DOI: 10.1091/Mbc.E19-02-0107  0.224
2021 Gomez YK, Natale AM, Lincoff J, Wolgemuth CW, Rosenberg JM, Grabe M. Taking the Monte-Carlo gamble: How not to buckle under the pressure! Journal of Computational Chemistry. PMID 34921560 DOI: 10.1002/jcc.26798  0.22
2009 Choe S, Hecht KA, Grabe M. A continuum method for determining membrane protein insertion energies and the problem of charged residues (Journal of General Physiology (2008) 131, 6, (563-573)) Journal of General Physiology. 134: 77. DOI: 10.1085/jgp.200809959062209c  0.219
2022 Bertholet AM, Natale AM, Bisignano P, Suzuki J, Fedorenko A, Hamilton J, Brustovetsky T, Kazak L, Garrity R, Chouchani ET, Brustovetsky N, Grabe M, Kirichok Y. Mitochondrial uncouplers induce proton leak by activating AAC and UCP1. Nature. 606: 180-187. PMID 35614225 DOI: 10.1038/s41586-022-04747-5  0.214
2011 Cantalupo PG, Calgua B, Zhao G, Hundesa A, Wier AD, Katz JP, Grabe M, Hendrix RW, Girones R, Wang D, Pipas JM. Raw sewage harbors diverse viral populations. Mbio. 2. PMID 21972239 DOI: 10.1128/Mbio.00180-11  0.198
2021 Fong LK, Chalkley MJ, Tan SK, Grabe M, DeGrado WF. Elucidation of the molecular interactions that enable stable assembly and structural diversity in multicomponent immune receptors. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34155106 DOI: 10.1073/pnas.2026318118  0.193
2022 Arrigoni C, Lolicato M, Shaya D, Rohaim A, Findeisen F, Fong LK, Colleran CM, Dominik P, Kim SS, Schuermann JP, DeGrado WF, Grabe M, Kossiakoff AA, Minor DL. Quaternary structure independent folding of voltage-gated ion channel pore domain subunits. Nature Structural & Molecular Biology. 29: 537-548. PMID 35655098 DOI: 10.1038/s41594-022-00775-x  0.191
2006 Nayak S, Olkin I, Liu H, Grabe M, Gould MK, Allen IE, Owens DK, Bravata DM. Meta-analysis: accuracy of quantitative ultrasound for identifying patients with osteoporosis. Annals of Internal Medicine. 144: 832-41. PMID 16754925 DOI: 10.7326/0003-4819-144-11-200606060-00009  0.186
2020 Lolicato M, Natale AM, Abderemane-Ali F, Crottès D, Capponi S, Duman R, Wagner A, Rosenberg JM, Grabe M, Minor DL. K channel C-type gating involves asymmetric selectivity filter order-disorder transitions. Science Advances. 6. PMID 33127683 DOI: 10.1126/sciadv.abc9174  0.18
2020 Pirro F, Schmidt N, Lincoff J, Widel ZX, Polizzi NF, Liu L, Therien MJ, Grabe M, Chino M, Lombardi A, DeGrado WF. Allosteric cooperation in a de novo-designed two-domain protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 33318174 DOI: 10.1073/pnas.2017062117  0.178
2022 Kosmidis E, Shuttle CG, Preobraschenski J, Ganzella M, Johnson PJ, Veshaguri S, Holmkvist J, Møller MP, Marantos O, Marcoline F, Grabe M, Pedersen JL, Jahn R, Stamou D. Regulation of the mammalian-brain V-ATPase through ultraslow mode-switching. Nature. 611: 827-834. PMID 36418452 DOI: 10.1038/s41586-022-05472-9  0.164
2021 Chin MY, Patwardhan AR, Ang KH, Wang AL, Alquezar C, Welch M, Nguyen PT, Grabe M, Molofsky AV, Arkin MR, Kao AW. Genetically Encoded, pH-Sensitive mTFP1 Biosensor for Probing Lysosomal pH. Acs Sensors. PMID 34102054 DOI: 10.1021/acssensors.0c02318  0.141
2010 Choudhary OP, Ujwal R, Kowallis W, Coalson R, Abramson J, Grabe M. The Electrostatics of VDAC: Implications in Selectivity and Gating Biophysical Journal. 98: 53a. DOI: 10.1016/j.bpj.2009.12.306  0.119
2022 Marcoline FV, Furth J, Nayak S, Grabe M, Macey RI. Berkeley Madonna version 10 - a simulation package for solving mathematical models. Cpt: Pharmacometrics & Systems Pharmacology. PMID 35064965 DOI: 10.1002/psp4.12757  0.108
2015 Zwier MC, Adelman JL, Kaus JW, Pratt AJ, Wong KF, Rego NB, Suárez E, Lettieri S, Wang DW, Grabe M, Zuckerman DM, Chong LT. WESTPA: An interoperable, highly scalable software package for weighted ensemble simulation and analysis Journal of Chemical Theory and Computation. 11: 800-809. DOI: 10.1021/ct5010615  0.084
1979 Grabe MD. Reader imposed structure and prose retention Contemporary Educational Psychology. 4: 162-171. DOI: 10.1016/0361-476X(79)90071-7  0.061
2021 Natale AM, Lorenz Lolicato MG, Abderemane-Ali F, Crottès D, Capponi S, Duman R, Wagner A, Rosenberg JM, Grabe M, Minor DL. K2PChannel C-Type Gating Involves Asymmetric Selectivity Filter Order-Disorder Transitions Biophysical Journal. 120: 111a-112a. DOI: 10.1016/J.BPJ.2020.11.898  0.058
2004 Grabe M. Fundamental constants - True values and expectations Cpem Digest (Conference On Precision Electromagnetic Measurements). 654-655. DOI: 10.1109/CPEM.2004.305465  0.036
1978 Grabe M. Note on the application of the method of least squares Metrologia. 14: 143-146. DOI: 10.1088/0026-1394/14/4/002  0.03
1996 Grabe M. An alternative algorithm for adjusting the fundamental physical constants Physics Letters A. 213: 125-137. DOI: 10.1016/0375-9601(96)00099-0  0.03
1987 Grabe M. Principles of "metrological Statistics" Metrologia. 23: 213-219. DOI: 10.1088/0026-1394/23/4/006  0.02
2001 Grabe M. Estimation of measurement uncertainties - An alternative to the ISO Guide Metrologia. 38: 97-106. DOI: 10.1088/0026-1394/38/2/1  0.015
2010 Grabe M. Generalized gaussian error calculus Generalized Gaussian Error Calculus. 1-301. DOI: 10.1007/978-3-642-03305-6  0.013
2014 Grabe M. Measurement uncertainties in science and technology: Second edition Measurement Uncertainties in Science and Technology: Second Edition. 1-401. DOI: 10.1007/978-3-319-04888-8  0.01
1995 Grabe M. Uncertainties, confidence ellipsoids and security polytopes in LSA (Physics Letters A 165 (1992) 124) (PII:0375-9601(92)90087-3) Physics Letters A. 205: 425. DOI: 10.1016/0375-9601(95)00546-F  0.01
1992 Grabe M. Uncertainties, confidence ellipsoids and security polytopes in LSA Physics Letters A. 165: 124-132. DOI: 10.1016/0375-9601(92)90087-3  0.01
1978 Grabe MD. Processing of visual and name codes in good and poor readers Contemporary Educational Psychology. 3: 69-76. DOI: 10.1016/0361-476X(78)90011-5  0.01
1976 Grabe MD. Peer priorities and the impact of academic achievement Contemporary Educational Psychology. 1: 314-318. DOI: 10.1016/0361-476X(76)90051-5  0.01
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