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Mary D. Barkley - Publications

Affiliations: 
Case Western Reserve University, Cleveland Heights, OH, United States 
Area:
General Biophysics, Biochemistry
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Pan CP, Muiño PL, Barkley MD, Callis PR. Correlation of tryptophan fluorescence spectral shifts and lifetimes arising directly from heterogeneous environment. The Journal of Physical Chemistry. B. 115: 3245-53. PMID 21370844 DOI: 10.1021/Jp111925W  0.644
2011 Barkley MD. Nonradiative Processes in Constrained Trps and Model Compounds Biophysical Journal. 100: 609a. DOI: 10.1016/J.Bpj.2010.12.3508  0.328
2011 Deredge DJ, Howard KJ, Seckler JM, Barkley MD, Wintrode PL. Molecular Origins of HIV-1 reverse Transcriptase Resistance to Efavirenz Biophysical Journal. 100: 227a. DOI: 10.1016/J.Bpj.2010.12.1455  0.375
2010 Braz VA, Barkley MD, Jockusch RA, Wintrode PL. Efavirenz binding site in HIV-1 reverse transcriptase monomers. Biochemistry. 49: 10565-73. PMID 21090588 DOI: 10.1021/Bi101480Z  0.401
2010 Braz VA, Holladay LA, Barkley MD. Efavirenz binding to HIV-1 reverse transcriptase monomers and dimers. Biochemistry. 49: 601-10. PMID 20039714 DOI: 10.1021/Bi901579Y  0.404
2010 Pan C, Muíño PL, Barkley MD, Callis PR. Understanding Wavelength Dependence of Tryptophan Fluorescence Decays Biophysical Journal. 98: 583a. DOI: 10.1016/J.Bpj.2009.12.3168  0.624
2009 Venezia CF, Meany BJ, Braz VA, Barkley MD. Kinetics of association and dissociation of HIV-1 reverse transcriptase subunits. Biochemistry. 48: 9084-93. PMID 19715314 DOI: 10.1021/Bi9010495  0.38
2009 Seckler JM, Howard KJ, Barkley MD, Wintrode PL. Solution structural dynamics of HIV-1 reverse transcriptase heterodimer. Biochemistry. 48: 7646-55. PMID 19594135 DOI: 10.1021/Bi900790X  0.331
2006 Pan CP, Callis PR, Barkley MD. Dependence of tryptophan emission wavelength on conformation in cyclic hexapeptides. The Journal of Physical Chemistry. B. 110: 7009-16. PMID 16571015 DOI: 10.1021/Jp056164P  0.603
2006 Venezia CF, Howard KJ, Ignatov ME, Holladay LA, Barkley MD. Effects of efavirenz binding on the subunit equilibria of HIV-1 reverse transcriptase. Biochemistry. 45: 2779-89. PMID 16503633 DOI: 10.1021/Bi051915Z  0.675
2005 Ignatov ME, Berdis AJ, Le Grice SF, Barkley MD. Attenuation of DNA replication by HIV-1 reverse transcriptase near the central termination sequence. Biochemistry. 44: 5346-56. PMID 15807528 DOI: 10.1021/Bi048000P  0.681
2004 Pan CP, Barkley MD. Conformational effects on tryptophan fluorescence in cyclic hexapeptides. Biophysical Journal. 86: 3828-35. PMID 15189879 DOI: 10.1529/biophysj.103.038901  0.575
2003 Watrob HM, Pan CP, Barkley MD. Two-step FRET as a structural tool. Journal of the American Chemical Society. 125: 7336-43. PMID 12797808 DOI: 10.1021/Ja034564P  0.577
2003 Zawadzki KM, Pan CP, Barkley MD, Johnson D, Taylor SS. Endogenous tryptophan residues of cAPK regulatory subunit type IIbeta reveal local variations in environments and dynamics. Proteins. 51: 552-61. PMID 12784214 DOI: 10.1002/Prot.10326  0.553
2002 Tsujikawa L, Strainic MG, Watrob H, Barkley MD, DeHaseth PL. RNA polymerase alters the mobility of an A-residue crucial to polymerase-induced melting of promoter DNA. Biochemistry. 41: 15334-41. PMID 12484772 DOI: 10.1021/Bi026539M  0.353
2002 Liu B, Thalji RK, Adams PD, Fronczek FR, McLaughlin ML, Barkley MD. Fluorescence of cis-1-amino-2-(3-indolyl)cyclohexane-1-carboxylic acid: a single tryptophan chi(1) rotamer model. Journal of the American Chemical Society. 124: 13329-38. PMID 12405862 DOI: 10.1021/Ja016542D  0.389
2002 Adams PD, Chen Y, Ma K, Zagorski MG, Sönnichsen FD, McLaughlin ML, Barkley MD. Intramolecular quenching of tryptophan fluorescence by the peptide bond in cyclic hexapeptides. Journal of the American Chemical Society. 124: 9278-86. PMID 12149035 DOI: 10.1021/Ja0167710  0.44
2001 Berdis AJ, Stetor SR, LeGrice SFJ, Barkley MD. Molecular mechanism of sequence-specific termination of lentiviral replication Biochemistry. 40: 12140-12149. PMID 11580289 DOI: 10.1021/Bi010354I  0.354
2001 Watrob H, Liu W, Chen Y, Bartlett SG, Jen-Jacobson L, Barkley MD. Solution conformation of EcoRI restriction endonuclease changes upon binding of cognate DNA and Mg2+ cofactor Biochemistry. 40: 683-692. PMID 11170385 DOI: 10.1021/bi002055j  0.358
2000 Liu B, Barkley MD, Morales GA, McLaughlin ML, Callis PR. Fluorescence Properties of Benz[f]indole, a Wavelength and Quenching Selective Tryptophan Analog Journal of Physical Chemistry B. 104: 1837-1843. DOI: 10.1021/Jp9925536  0.41
1998 Liu W, Chen Y, Watrob H, Bartlett SG, Jen-Jacobson L, Barkley MD. N-termini of EcoRI restriction endonuclease dimer are in close proximity on the protein surface. Biochemistry. 37: 15457-65. PMID 9799508 DOI: 10.1021/Bi980557F  0.416
1998 Chen Y, Barkley MD. Toward understanding tryptophan fluorescence in proteins Biochemistry. 37: 9976-9982. PMID 9665702 DOI: 10.1021/Bi980274N  0.433
1997 Javadpour MM, Barkley MD. Self-assembly of designed antimicrobial peptides in solution and micelles Biochemistry. 36: 9540-9549. PMID 9236000 DOI: 10.1021/Bi961644F  0.323
1997 McLaughlin ML, Barkley MD. Time-resolved fluorescence of constrained tryptophan derivatives: implications for protein fluorescence. Methods in Enzymology. 278: 190-202. PMID 9170314 DOI: 10.1016/S0076-6879(97)78011-X  0.385
1996 Barkley MD, Chen Q, Walczak WJ, Maskos K. Time-resolved fluorescence studies of tomaymycin bonding to synthetic DNAs. Biophysical Journal. 70: 1923-32. PMID 8785351 DOI: 10.1016/S0006-3495(96)79756-4  0.422
1996 Chen Y, Liu B, Yu HT, Barkley MD. The peptide bond quenches indole fluorescence Journal of the American Chemical Society. 118: 9271-9278. DOI: 10.1021/Ja961307U  0.395
1995 Chen Y, Liu B, Barkley MD. Trifluoroethanol quenches indole fluorescence by excited-state proton transfer Journal of the American Chemical Society. 117: 5608-5609. DOI: 10.1021/Ja00125A032  0.388
1994 Chen Q, Chowdhury FN, Maskos K, Barkley MD. Time-resolved fluorescence studies of tomaymycin bonding to DNA. Biochemistry. 33: 8719-27. PMID 8038162 DOI: 10.1021/Bi00195A013  0.43
1993 Kim SJ, Chowdhury FN, Stryjewski W, Younathan ES, Russo PS, Barkley MD. Time-resolved fluorescence of the single tryptophan of Bacillus stearothermophilus phosphofructokinase. Biophysical Journal. 65: 215-26. PMID 8369432 DOI: 10.1016/S0006-3495(93)81070-1  0.444
1992 Yu HT, Colucci WJ, McLaughlin ML, Barkley MD. Fluorescence quenching in indoles by excited-state proton transfer Journal of the American Chemical Society. 114: 8455-8463. DOI: 10.1021/Ja00048A015  0.387
1991 Barkley MD. Steady-state fluorescence and molecular-modeling studies of tomaymycin-DNA adducts Biochemistry. 30: 4421-4431. PMID 2021633 DOI: 10.1021/Bi00232A008  0.415
1990 Boyd FL, Stewart D, Remers WA, Barkley MD, Hurley LH. Characterization of a unique tomaymycin-d(CICGAATTCICG)2 adduct containing two drug molecules per duplex by NMR, fluorescence, and molecular modeling studies. Biochemistry. 29: 2387-403. PMID 2337606 DOI: 10.1021/Bi00461A024  0.377
1990 Zhu BC, Laine RA, Barkley MD. Intrinsic tryptophan fluorescence measurements suggest that polylactosaminyl glycosylation affects the protein conformation of the gelatin-binding domain from human placental fibronectin. European Journal of Biochemistry / Febs. 189: 509-16. PMID 2112461 DOI: 10.1111/J.1432-1033.1990.Tb15516.X  0.426
1990 Colucci WJ, Tilstra L, Sattler MC, Fronczek FR, Barkley MD. Conformational studies of a constrained tryptophan derivative: implications for the fluorescence quenching mechanism Journal of the American Chemical Society. 112: 9182-9190. DOI: 10.1021/Ja00181A022  0.353
1990 Tilstra L, Sattler MC, Cherry WR, Barkley MD. Fluorescence of a rotationally constrained tryptophan derivative, 3-carboxy-1,2,3,4-tetrahydro-2-carboline Journal of the American Chemical Society. 112: 9176-9182. DOI: 10.1021/Ja00181A021  0.446
1989 Philips AV, Coleman MS, Maskos K, Barkley MD. Time-resolved fluorescence spectroscopy of human adenosine deaminase: Effects of enzyme inhibitors on protein conformation Biochemistry. 28: 2040-2050. PMID 2719944 DOI: 10.1021/Bi00431A012  0.415
1988 Cheatham S, Kook A, Hurley LH, Barkley MD, Remers W. One- and two-dimensional 1H NMR, fluorescence, and molecular modeling studies on the tomaymycin-d(ATGCAT)2 Adduct. Evidence for two covalent adducts with opposite orientations and stereochemistries at the covalent linkage site Journal of Medicinal Chemistry. 31: 583-590. PMID 3346874 DOI: 10.1021/Jm00398A016  0.33
1987 Bergmann WR, Barkley MD, Hemingway RW, Mattice WL. Heterogeneous Fluorescence Decay of (4-6)- and (4-8)- Linked Dimers of ( + )-Catechin and (-)- Epicatechin as a Result of Rotational Isomerism Journal of the American Chemical Society. 109: 6614-6619. DOI: 10.1021/Ja00256A009  0.399
1986 Barkley MD, Cheatham S, Thurston DE, Hurley LH. Pyrrolo[1,4]benzodiazepine antitumor antibiotics: Evidence for two forms of tomaymycin bound to DNA Biochemistry. 25: 3021-3031. PMID 3718937 DOI: 10.1021/Bi00358A043  0.399
1985 Robbins DJ, Deibel MR, Barkley MD. Tryptophan fluorescence of terminal deoxynucleotidyl transferase: effects of quenchers on time-resolved emission spectra. Biochemistry. 24: 7250-7. PMID 4084579 DOI: 10.1021/Bi00346A034  0.424
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