Cliburn Chan - Publications

Affiliations: 
Computational Biology and Bioinformatics Duke University, Durham, NC 
Area:
Bioinformatics Biology, Immunology, Computer Science

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yi JS, Rosa-Bray M, Staats J, Zakroysky P, Chan C, Russo MA, Dumbauld C, White S, Gierman T, Weinhold KJ, Guptill JT. Establishment of normative ranges of the healthy human immune system with comprehensive polychromatic flow cytometry profiling. Plos One. 14: e0225512. PMID 31825961 DOI: 10.1371/Journal.Pone.0225512  0.392
2017 Pedersen NW, Chandran PA, Qian Y, Rebhahn J, Petersen NV, Hoff MD, White S, Lee AJ, Stanton R, Halgreen C, Jakobsen K, Mosmann T, Gouttefangeas C, Chan C, Scheuermann RH, et al. Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells. Frontiers in Immunology. 8: 858. PMID 28798746 DOI: 10.3389/Fimmu.2017.00858  0.392
2017 Gaillard S, Dumbauld C, Bilewski A, Ehrisman JA, Secord AA, Havrilesky LJ, Berchuck A, Weinhold K, Chan C, Yi J. Evaluating the repertoire of immune checkpoint markers expressed on peripheral and ascites CD8+ T cells in ovarian cancer. Journal of Clinical Oncology. 35: 5571-5571. DOI: 10.1200/Jco.2017.35.15_Suppl.5571  0.33
2015 Lin L, Chan C, West M. Discriminative variable subsets in Bayesian classification with mixture models, with application in flow cytometry studies. Biostatistics (Oxford, England). PMID 26040910 DOI: 10.1093/Biostatistics/Kxv021  0.361
2015 Kvistborg P, Gouttefangeas C, Aghaeepour N, Cazaly A, Chattopadhyay PK, Chan C, Eckl J, Finak G, Hadrup SR, Maecker HT, Maurer D, Mosmann T, Qiu P, Scheuermann RH, Welters MJ, et al. Thinking outside the gate: single-cell assessments in multiple dimensions. Immunity. 42: 591-2. PMID 25902473 DOI: 10.1016/J.Immuni.2015.04.006  0.348
2015 Gouttefangeas C, Chan C, Attig S, Køllgaard TT, Rammensee HG, Stevanović S, Wernet D, thor Straten P, Welters MJ, Ottensmeier C, van der Burg SH, Britten CM. Data analysis as a source of variability of the HLA-peptide multimer assay: from manual gating to automated recognition of cell clusters. Cancer Immunology, Immunotherapy : Cii. 64: 585-98. PMID 25854580 DOI: 10.1007/S00262-014-1649-1  0.411
2014 White S, Laske K, Welters MJ, Bidmon N, van der Burg SH, Britten CM, Enzor J, Staats J, Weinhold KJ, Gouttefangeas C, Chan C. Managing Multi-center Flow Cytometry Data for Immune Monitoring. Cancer Informatics. 13: 111-22. PMID 26085786 DOI: 10.4137/Cin.S16346  0.412
2014 Richards AJ, Staats J, Enzor J, McKinnon K, Frelinger J, Denny TN, Weinhold KJ, Chan C. Setting objective thresholds for rare event detection in flow cytometry. Journal of Immunological Methods. 409: 54-61. PMID 24727143 DOI: 10.1016/J.Jim.2014.04.002  0.551
2013 Cron A, Gouttefangeas C, Frelinger J, Lin L, Singh SK, Britten CM, Welters MJ, van der Burg SH, West M, Chan C. Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples. Plos Computational Biology. 9: e1003130. PMID 23874174 DOI: 10.1371/Journal.Pcbi.1003130  0.6
2013 Lin L, Chan C, Hadrup SR, Froesig TM, Wang Q, West M. Hierarchical Bayesian mixture modelling for antigen-specific T-cell subtyping in combinatorially encoded flow cytometry studies. Statistical Applications in Genetics and Molecular Biology. 12: 309-31. PMID 23629459 DOI: 10.1515/Sagmb-2012-0001  0.424
2013 Cron A, Gouttefangeas C, Frelinger J, Lin L, Singh SK, Britten CM, Welters MJP, Burg SHvd, West M, Chan C. Comparison of accuracy, reproducibility and linearity of manual gating, DPGMM and HDPGMM. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1003130.G007  0.481
2010 Chan C, Lin L, Frelinger J, Hérbert V, Gagnon D, Landry C, Sékaly RP, Enzor J, Staats J, Weinhold KJ, Jaimes M, West M. Optimization of a highly standardized carboxyfluorescein succinimidyl ester flow cytometry panel and gating strategy design using discriminative information measure evaluation. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 77: 1126-36. PMID 21053294 DOI: 10.1002/Cyto.A.20987  0.554
2010 Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 19: 419-438. PMID 20877443 DOI: 10.1198/Jcgs.2010.10016  0.541
2010 Manolopoulou I, Chan C, West M. Selection Sampling from Large Data Sets for Targeted Inference in Mixture Modeling. Bayesian Analysis (Online). 5: 1-22. PMID 20865145 DOI: 10.1214/10-Ba517  0.369
2010 Frelinger J, Ottinger J, Gouttefangeas C, Chan C. Modeling flow cytometry data for cancer vaccine immune monitoring. Cancer Immunology, Immunotherapy : Cii. 59: 1435-41. PMID 20563720 DOI: 10.1007/S00262-010-0883-4  0.578
2008 Frelinger J, Kepler TB, Chan C. Flow: Statistics, visualization and informatics for flow cytometry. Source Code For Biology and Medicine. 3: 10. PMID 18559108 DOI: 10.1186/1751-0473-3-10  0.523
2008 Chan C, Feng F, Ottinger J, Foster D, West M, Kepler TB. Statistical mixture modeling for cell subtype identification in flow cytometry. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 73: 693-701. PMID 18496851 DOI: 10.1002/Cyto.A.20583  0.384
2008 Mitha F, Lucas TA, Feng F, Kepler TB, Chan C. The Multiscale Systems Immunology project: software for cell-based immunological simulation. Source Code For Biology and Medicine. 3: 6. PMID 18442405 DOI: 10.1186/1751-0473-3-6  0.307
2007 Yates A, Chan C, Strid J, Moon S, Callard R, George AJ, Stark J. Reconstruction of cell population dynamics using CFSE. Bmc Bioinformatics. 8: 196. PMID 17565685 DOI: 10.1186/1471-2105-8-196  0.31
2007 Chan C, George AJT, Stark J. Cytotoxic Killing and Immune Evasion by Repair Journal of Statistical Physics. 128: 393-411. DOI: 10.1007/S10955-006-9242-4  0.322
2006 Alam AK, Florey O, Weber M, Pillai RG, Chan C, Tan PH, Lechler RI, McClure MO, Haskard DO, George AJ. Knockdown of mouse VCAM-1 by vector-based siRNA. Transplant Immunology. 16: 185-93. PMID 17138052 DOI: 10.1016/J.Trim.2006.08.004  0.302
2005 George AJ, Stark J, Chan C. Understanding specificity and sensitivity of T-cell recognition. Trends in Immunology. 26: 653-9. PMID 16236548 DOI: 10.1016/J.It.2005.09.011  0.336
2005 Tan PH, Yates JB, Xue SA, Chan C, Jordan WJ, Harper JE, Watson MP, Dong R, Ritter MA, Lechler RI, Lombardi G, George AJ. Creation of tolerogenic human dendritic cells via intracellular CTLA4: a novel strategy with potential in clinical immunosuppression. Blood. 106: 2936-43. PMID 15994283 DOI: 10.1182/Blood-2005-05-1826  0.348
2005 Chan C, Stark J, George AJT. The impact of multiple T cell-APC encounters and the role of anergy Journal of Computational and Applied Mathematics. 184: 101-120. DOI: 10.1016/J.Cam.2004.07.036  0.368
2004 Chan C, Stark J, George AJ. Feedback control of T-cell receptor activation. Proceedings. Biological Sciences / the Royal Society. 271: 931-9. PMID 15255048 DOI: 10.1098/Rspb.2003.2587  0.317
2003 Chan C, George AJT, Stark J. T cell sensitivity and specificity - kinetic proofreading revisited Discrete and Continuous Dynamical Systems-Series B. 3: 343-360. DOI: 10.3934/Dcdsb.2003.3.343  0.351
2001 Chan C, George AJT, Stark J. Cooperative enhancement of specificity in a lattice of T cell receptors Proceedings of the National Academy of Sciences of the United States of America. 98: 5758-5763. PMID 11344310 DOI: 10.1073/Pnas.101113698  0.336
Show low-probability matches.