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Reinhard R. Beichel - Publications

Affiliations: 
Electrical and Computer Engineering University of Iowa, Iowa City, IA 
Area:
Computer Engineering, Electronics and Electrical Engineering
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Xiong X, Smith BJ, Graves SA, Graham MM, Buatti JM, Beichel RR. Head and Neck Cancer Segmentation in FDG PET Images: Performance Comparison of Convolutional Neural Networks and Vision Transformers. Tomography (Ann Arbor, Mich.). 9: 1933-1948. PMID 37888743 DOI: 10.3390/tomography9050151  0.357
2022 Xiong X, Smith BJ, Graves SA, Sunderland JJ, Graham MM, Gross BA, Buatti JM, Beichel RR. Quantification of uptake in pelvis F-18 FLT PET-CT images using a 3D localization and segmentation CNN. Medical Physics. PMID 34982836 DOI: 10.1002/mp.15440  0.302
2020 Smith BJ, Buatti JM, Bauer C, Ulrich EJ, Ahmadvand P, Budzevich MM, Gillies RJ, Goldgof D, Grkovski M, Hamarneh G, Kinahan PE, Muzi JP, Muzi M, Laymon CM, Mountz JM, ... ... Beichel RR, et al. Multisite Technical and Clinical Performance Evaluation of Quantitative Imaging Biomarkers from 3D FDG PET Segmentations of Head and Neck Cancer Images. Tomography (Ann Arbor, Mich.). 6: 65-76. PMID 32548282 DOI: 10.18383/j.tom.2020.00004  0.358
2020 Ghattas AE, Beichel RR, Smith BJ. A unified framework for simultaneous assessment of accuracy, between-, and within-reader variability of image segmentations. Statistical Methods in Medical Research. 962280220920894. PMID 32432517 DOI: 10.1177/0962280220920894  0.487
2020 Glenny RW, Krueger MA, Bauer C, Beichel RR. The Fractal Geometry of Bronchial Trees Differ by Strain in Mice. Journal of Applied Physiology (Bethesda, Md. : 1985). PMID 31917627 DOI: 10.1152/Japplphysiol.00838.2019  0.301
2019 Xiong X, Linhardt TJ, Liu W, Smith BJ, Sun W, Bauer C, Sunderland JJ, Graham MM, Buatti JM, Beichel RR. A 3D deep convolutional neural network approach for the automated measurement of cerebellum tracer uptake in FDG PET-CT scans. Medical Physics. PMID 31855287 DOI: 10.1002/Mp.13970  0.349
2019 Bauer C, Krueger MA, Lamm WJE, Glenny RW, Beichel RR. lapdMouse: associating lung anatomy with local particle deposition in mice. Journal of Applied Physiology (Bethesda, Md. : 1985). PMID 31774357 DOI: 10.1152/Japplphysiol.00615.2019  0.37
2019 Rendleman MC, Buatti JM, Braun TA, Smith BJ, Nwakama C, Beichel RR, Brown B, Casavant TL. Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality. Bmc Bioinformatics. 20: 339. PMID 31208324 DOI: 10.1186/S12859-019-2929-8  0.303
2019 Beichel RR, Ulrich EJ, Smith BJ, Bauer C, Brown B, Casavant T, Sunderland JJ, Graham MM, Buatti JM. FDG PET based prediction of response in head and neck cancer treatment: Assessment of new quantitative imaging features. Plos One. 14: e0215465. PMID 31002689 DOI: 10.1371/Journal.Pone.0215465  0.373
2018 Bauer C, Eberlein M, Beichel RR. Pulmonary lobe separation in expiration chest CT scans based on subject-specific priors derived from inspiration scans. Journal of Medical Imaging (Bellingham, Wash.). 5: 014003. PMID 29487878 DOI: 10.1117/1.Jmi.5.1.014003  0.487
2018 Taher H, Bauer C, Abston E, Kaczka DW, Bhatt SP, Zabner J, Brower RG, Beichel RR, Eberlein M. Chest wall strapping increases expiratory airflow and detectable airway segments in computer tomographic scans of normal and obstructed lungs. Journal of Applied Physiology (Bethesda, Md. : 1985). PMID 29357485 DOI: 10.1152/Japplphysiol.00184.2017  0.413
2017 Smith BJ, Beichel RR. A Bayesian framework for performance assessment and comparison of imaging biomarker quantification methods. Statistical Methods in Medical Research. 962280217741334. PMID 29271301 DOI: 10.1177/0962280217741334  0.394
2017 Ulrich EJ, Sunderland JJ, Smith BJ, Mohiuddin I, Parkhurst J, Plichta KA, Buatti JM, Beichel RR. Automated Model-Based Quantitative Analysis of Phantoms with Spherical Inserts in FDG PET Scans. Medical Physics. PMID 29091269 DOI: 10.1002/Mp.12643  0.415
2017 Abston E, Comellas A, Reed RM, Kim V, Wise RA, Brower R, Fortis S, Beichel R, Bhatt S, Zabner J, Newell J, Hoffman EA, Eberlein M. Higher BMI is associated with higher expiratory airflow normalised for lung volume (FEF25-75/FVC) in COPD. Bmj Open Respiratory Research. 4: e000231. PMID 29071083 DOI: 10.1136/Bmjresp-2017-000231  0.312
2017 Yusung Kim, Patwardhan KA, Beichel RR, Smith BJ, Mart C, Plichta KA, Chang T, Sonka M, Graham MM, Magnotta V, Casavant T, Junyi Xia, Buatti JM. Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2017: 3409-3412. PMID 29060629 DOI: 10.1109/EMBC.2017.8037588  0.307
2017 Beichel RR, Smith BJ, Bauer C, Ulrich EJ, Ahmadvand P, Budzevich MM, Gillies RJ, Goldgof D, Grkovski M, Hamarneh G, Huang Q, Kinahan PE, Laymon CM, Mountz JM, Muzi JP, et al. Multi-site quality and variability analysis of 3D FDG PET segmentations based on phantom and clinical image data. Medical Physics. 44: 479-496. PMID 28205306 DOI: 10.1002/Mp.12041  0.442
2016 Kim Y, Patwardhan KA, Beichel RR, Smith BJ, Ulrich EJ, Mart C, Chang T, Plichta KA, Buatti J. Impact of Contouring Accuracy on Expected Tumor Control Probability for Head and Neck Cancer: Semiautomated Segmentation Versus Manual Contouring. International Journal of Radiation Oncology, Biology, Physics. 96: E545. PMID 27674977 DOI: 10.1016/J.Ijrobp.2016.06.1993  0.343
2016 Gill G, Beichel RR. An approach for reducing the error rate in automated lung segmentation. Computers in Biology and Medicine. 76: 143-153. PMID 27447897 DOI: 10.1016/J.Compbiomed.2016.06.022  0.519
2016 Beichel RR, Van Tol M, Ulrich EJ, Bauer C, Chang T, Plichta KA, Smith BJ, Sunderland JJ, Graham MM, Sonka M, Buatti JM. Semiautomated segmentation of head and neck cancers in 18F-FDG PET scans: A just-enough-interaction approach. Medical Physics. 43: 2948. PMID 27277044 DOI: 10.1118/1.4948679  0.387
2016 Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikinis R, Buatti J, Beichel RR. DICOM for quantitative imaging biomarker development: a standards based approach to sharing clinical data and structured PET/CT analysis results in head and neck cancer research. Peerj. 4: e2057. PMID 27257542 DOI: 10.7717/Peerj.2057  0.458
2016 Bauer C, Eberlein M, Beichel RR. Airway tree reconstruction in expiration chest CT scans facilitated by information transfer from corresponding inspiration scans. Medical Physics. 43: 1312. PMID 26936716 DOI: 10.1118/1.4941692  0.444
2015 Gill G, Beichel RR. Lung Segmentation in 4D CT Volumes Based on Robust Active Shape Model Matching. International Journal of Biomedical Imaging. 2015: 125648. PMID 26557844 DOI: 10.1155/2015/125648  0.505
2015 Bauer C, Eberlein M, Beichel RR. Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts. Ieee Transactions On Medical Imaging. 34: 1063-76. PMID 25438305 DOI: 10.1109/Tmi.2014.2374615  0.477
2014 Gill G, Toews M, Beichel RR. Robust Initialization of Active Shape Models for Lung Segmentation in CT Scans: A Feature-Based Atlas Approach. International Journal of Biomedical Imaging. 2014: 479154. PMID 25400660 DOI: 10.1155/2014/479154  0.54
2014 Gill G, Bauer C, Beichel RR. A method for avoiding overlap of left and right lungs in shape model guided segmentation of lungs in CT volumes. Medical Physics. 41: 101908. PMID 25281960 DOI: 10.1118/1.4894817  0.451
2014 Bauer C, Krueger MA, Lamm WJ, Smith BJ, Glenny RW, Beichel RR. Airway tree segmentation in serial block-face cryomicrotome images of rat lungs. Ieee Transactions On Bio-Medical Engineering. 61: 119-30. PMID 23955692 DOI: 10.1109/Tbme.2013.2277936  0.475
2014 Gill G, Beichel RR. Segmentation of lungs with interstitial lung disease in CT Scans: A TV-L1based texture analysis approach Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8887: 511-520.  0.385
2013 Glenny RW, Bauer C, Hofmanninger J, Lamm WJ, Krueger MA, Beichel RR. Heterogeneity and matching of ventilation and perfusion within anatomical lung units in rats. Respiratory Physiology & Neurobiology. 189: 594-606. PMID 23942308 DOI: 10.1016/J.Resp.2013.07.027  0.373
2013 Sun S, Sonka M, Beichel RR. Graph-based IVUS segmentation with efficient computer-aided refinement. Ieee Transactions On Medical Imaging. 32: 1536-49. PMID 23649180 DOI: 10.1109/Tmi.2013.2260763  0.613
2013 Sun S, Sonka M, Beichel RR. Lung segmentation refinement based on optimal surface finding utilizing a hybrid desktop/virtual reality user interface. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 37: 15-27. PMID 23415254 DOI: 10.1016/J.Compmedimag.2013.01.003  0.645
2013 Beichel R, Bornik A, Bauer C, Sorantin E. Liver segmentation in contrast enhanced CT data using graph cuts and interactive 3D segmentation refinement methods. Medical Physics. 39: 1361-73. PMID 22380370 DOI: 10.1118/1.3682171  0.431
2013 Sun S, Sonka M, Beichel RR. Graph-based 4D lung segmentation in CT images with expert-guided computer-aided refinement Proceedings - International Symposium On Biomedical Imaging. 1312-1315. DOI: 10.1109/ISBI.2013.6556773  0.641
2012 Bauer C, Adam R, Stoltz DA, Beichel RR. Computer-aided analysis of airway trees in micro-CT scans of ex vivo porcine lung tissue. Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. 36: 601-9. PMID 22959430 DOI: 10.1016/J.Compmedimag.2012.08.001  0.468
2012 Beichel RR, Wang Y. Computer-aided lymph node segmentation in volumetric CT data. Medical Physics. 39: 5419-28. PMID 22957609 DOI: 10.1118/1.4742845  0.407
2012 Lo P, van Ginneken B, Reinhardt JM, Yavarna T, de Jong PA, Irving B, Fetita C, Ortner M, Pinho R, Sijbers J, Feuerstein M, FabijaÅ„ska A, Bauer C, Beichel R, Mendoza CS, et al. Extraction of airways from CT (EXACT'09). Ieee Transactions On Medical Imaging. 31: 2093-107. PMID 22855226 DOI: 10.1109/Tmi.2012.2209674  0.436
2012 Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magnetic Resonance Imaging. 30: 1323-41. PMID 22770690 DOI: 10.1016/J.Mri.2012.05.001  0.354
2012 Bauer C, Sun S, Sun W, Otis J, Wallace A, Smith BJ, Sunderland JJ, Graham MM, Sonka M, Buatti JM, Beichel RR. Automated measurement of uptake in cerebellum, liver, and aortic arch in full-body FDG PET/CT scans. Medical Physics. 39: 3112-23. PMID 22755696 DOI: 10.1118/1.4711815  0.614
2012 Shepherd T, Teras M, Beichel RR, Boellaard R, Bruynooghe M, Dicken V, Gooding MJ, Julyan PJ, Lee JA, Lefèvre S. Comparative study with new accuracy metrics for target volume contouring in PET image guided radiation therapy. Ieee Transactions On Medical Imaging. 31: 2006-24. PMID 22692898 DOI: 10.1109/Tmi.2012.2202322  0.45
2012 Sun S, Bauer C, Beichel R. Automated 3-D segmentation of lungs with lung cancer in CT data using a novel robust active shape model approach. Ieee Transactions On Medical Imaging. 31: 449-60. PMID 21997248 DOI: 10.1109/Tmi.2011.2171357  0.627
2009 Bauer C, Pock T, Sorantin E, Bischof H, Beichel R. Segmentation of interwoven 3d tubular tree structures utilizing shape priors and graph cuts. Medical Image Analysis. 14: 172-84. PMID 20060769 DOI: 10.1016/J.Media.2009.11.003  0.403
2009 McNitt-Gray MF, Bidaut LM, Armato SG, Meyer CR, Gavrielides MA, Fenimore C, McLennan G, Petrick N, Zhao B, Reeves AP, Beichel R, Kim HJ, Kinnard L. Computed tomography assessment of response to therapy: tumor volume change measurement, truth data, and error. Translational Oncology. 2: 216-22. PMID 19956381 DOI: 10.1593/Tlo.09226  0.376
2009 Heimann T, van Ginneken B, Styner MA, Arzhaeva Y, Aurich V, Bauer C, Beck A, Becker C, Beichel R, Bekes G, Bello F, Binnig G, Bischof H, Bornik A, Cashman PM, et al. Comparison and evaluation of methods for liver segmentation from CT datasets. Ieee Transactions On Medical Imaging. 28: 1251-65. PMID 19211338 DOI: 10.1109/Tmi.2009.2013851  0.514
2005 Beichel R, Bischof H, Leberl F, Sonka M. Robust active appearance models and their application to medical image analysis. Ieee Transactions On Medical Imaging. 24: 1151-69. PMID 16156353 DOI: 10.1109/Tmi.2005.853237  0.403
2004 Werkgartner G, Lemmerer M, Hauser H, Sorantin E, Beichel R, Reitinger B, Bornik A, Leberl F, Mischinger HJ. Augmented-reality-based liver-surgical planning system European Surgery. 36: 270-274. DOI: 10.1007/S10353-004-0102-7  0.39
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