Year |
Citation |
Score |
2023 |
Nagy G, Diabate M, Banerjee T, Adamovich AI, Smith N, Jeon H, Dhar S, Liu W, Burgess K, Chung D, Starita LM, Parvin JD. Multiplexed assay of variant effect reveals residues of functional importance in the BRCA1 coiled-coil and serine cluster domains. Plos One. 18: e0293422. PMID 37917606 DOI: 10.1371/journal.pone.0293422 |
0.664 |
|
2023 |
Diabate M, Islam MM, Nagy G, Banerjee T, Dhar S, Smith N, Adamovich AI, Starita LM, Parvin JD. DNA repair function scores for 2172 variants in the BRCA1 amino-terminus. Plos Genetics. 19: e1010739. PMID 37578980 DOI: 10.1371/journal.pgen.1010739 |
0.684 |
|
2023 |
Diabate M, Islam MM, Nagy G, Banerjee T, Dhar S, Smith N, Adamovich AI, Starita LM, Parvin JD. DNA Repair Function Scores for 2172 Variants in the BRCA1 Amino-Terminus. Biorxiv : the Preprint Server For Biology. PMID 37090572 DOI: 10.1101/2023.04.10.536331 |
0.68 |
|
2022 |
Adamovich AI, Diabate M, Banerjee T, Nagy G, Smith N, Duncan K, Mendoza Mendoza E, Prida G, Freitas MA, Starita LM, Parvin JD. The functional impact of BRCA1 BRCT domain variants using multiplexed DNA double-strand break repair assays. American Journal of Human Genetics. PMID 35196514 DOI: 10.1016/j.ajhg.2022.01.019 |
0.677 |
|
2019 |
Adamovich AI, Banerjee T, Wingo M, Duncan K, Ning J, Martins Rodrigues F, Huang KL, Lee C, Chen F, Ding L, Parvin JD. Functional analysis of BARD1 missense variants in homology-directed repair and damage sensitivity. Plos Genetics. 15: e1008049. PMID 30925164 DOI: 10.1371/Journal.Pgen.1008049 |
0.44 |
|
2018 |
Starita LM, Islam MM, Banerjee T, Adamovich AI, Gullingsrud J, Fields S, Shendure J, Parvin JD. A Multiplex Homology-Directed DNA Repair Assay Reveals the Impact of More Than 1,000 BRCA1 Missense Substitution Variants on Protein Function. American Journal of Human Genetics. PMID 30219179 DOI: 10.1016/J.Ajhg.2018.07.016 |
0.723 |
|
2018 |
Adamovich A, Wingo M, Banerjee T, Gardner M, Freitas M, Parvin J. Abstract 1367: BRCA1 and BARD1 protein interactions that are required for DNA repair function Cancer Research. 78: 1367-1367. DOI: 10.1158/1538-7445.Am2018-1367 |
0.601 |
|
2017 |
Ando K, Shah AK, Sachdev V, Kleinstiver BP, Taylor-Parker J, Welch MM, Hu Y, Salgia R, White FM, Parvin JD, Ozonoff A, Rameh LE, Joung JK, Bharti AK. Camptothecin resistance is determined by the regulation of topoisomerase I degradation mediated by ubiquitin proteasome pathway. Oncotarget. PMID 28415827 DOI: 10.18632/Oncotarget.16376 |
0.401 |
|
2017 |
Martinez AR, Kaul Z, Parvin JD, Groden J. Differential requirements for DNA repair proteins in immortalized cell lines using alternative lengthening of telomere mechanisms. Genes, Chromosomes & Cancer. PMID 28398700 DOI: 10.1002/gcc.22465 |
0.374 |
|
2017 |
Batar B, Schrock M, Lee J, Druck T, Ferguson B, Hwan Cho J, Akakpo K, Hagrass H, Heerema N, Xia F, Parvin J, Aldaz M, Huebner K. WWOX-deficiency promotes increased survival by enhancing homology-directed repair European Journal of Cancer. 72: S148-S149. DOI: 10.1016/S0959-8049(17)30562-2 |
0.307 |
|
2016 |
Schrock MS, Batar B, Lee J, Druck T, Ferguson B, Cho JH, Akakpo K, Hagrass H, Heerema NA, Xia F, Parvin JD, Aldaz CM, Huebner K. Wwox-Brca1 interaction: role in DNA repair pathway choice. Oncogene. PMID 27869163 DOI: 10.1038/Onc.2016.389 |
0.386 |
|
2016 |
Palmieri D, Scarpa M, Tessari A, Uka R, Amari F, Lee C, Richmond T, Foray C, Sheetz T, Braddom A, Burd CE, Parvin JD, Ludwig T, Croce CM, Coppola V. Ran Binding Protein 9 (RanBP9) is a novel mediator of cellular DNA damage response in lung cancer cells. Oncotarget. PMID 26943034 DOI: 10.18632/Oncotarget.7813 |
0.419 |
|
2016 |
Nair SJ, Zhang X, Chiang HC, Jahid MJ, Wang Y, Garza P, April C, Salathia N, Banerjee T, Alenazi FS, Ruan J, Fan JB, Parvin JD, Jin VX, Hu Y, et al. Genetic suppression reveals DNA repair-independent antagonism between BRCA1 and COBRA1 in mammary gland development. Nature Communications. 7: 10913. PMID 26941120 DOI: 10.1038/Ncomms10913 |
0.518 |
|
2015 |
Lee C, Banerjee T, Gillespie J, Ceravolo A, Parvinsmith MR, Starita LM, Fields S, Toland AE, Parvin JD. Functional Analysis of BARD1 Missense Variants in Homology-Directed Repair of DNA Double Strand Breaks. Human Mutation. 36: 1205-14. PMID 26350354 DOI: 10.1002/Humu.22902 |
0.701 |
|
2015 |
Starita LM, Young DL, Islam M, Kitzman JO, Gullingsrud J, Hause RJ, Fowler DM, Parvin JD, Shendure J, Fields S. Massively Parallel Functional Analysis of BRCA1 RING Domain Variants. Genetics. 200: 413-22. PMID 25823446 DOI: 10.1534/Genetics.115.175802 |
0.647 |
|
2015 |
Liu HW, Banerjee T, Guan X, Freitas MA, Parvin JD. The chromatin scaffold protein SAFB1 localizes SUMO-1 to the promoters of ribosomal protein genes to facilitate transcription initiation and splicing. Nucleic Acids Research. 43: 3605-13. PMID 25800734 DOI: 10.1093/Nar/Gkv246 |
0.381 |
|
2015 |
Shah AK, Sachdew V, Taylor-Parker J, Tapan U, Tohme YH, Malinkovich Y, Tran B, Gibbs P, Salgia R, White FM, Parvin J, Bharti A. Effect of DNA-PK dependent phosphorylation of topo-I-S10 on its rate of proteasomal degradation and CPT response. Journal of Clinical Oncology. 33: 606-606. DOI: 10.1200/Jco.2015.33.3_Suppl.606 |
0.447 |
|
2015 |
Palmieri D, Scarpa M, Tessari A, Uka R, Amari F, Lee C, Richmond T, Sheetz T, Parvin J, Ludwig T, Croce CM, Coppola V. Abstract LB-164: Ran Binding Protein 9 (RanBP9) is a novel mediator of cellular DNA damage response in lung cancer cells Cancer Research. 75. DOI: 10.1158/1538-7445.Am2015-Lb-164 |
0.478 |
|
2015 |
Huang K, Wang J, Cao S, Xie M, Jayasinghe R, Ning J, McLellan M, Wendl M, Scott A, Johnson K, Davies S, Fenyö D, Townsend R, Chen F, Parvin J, et al. Abstract 1939: Discovery and proteogenomic investigation of genetic variants in human cancers Cancer Research. 75: 1939-1939. DOI: 10.1158/1538-7445.Am2015-1939 |
0.367 |
|
2014 |
Hu Y, Wang C, Huang K, Xia F, Parvin JD, Mondal N. Regulation of 53BP1 protein stability by RNF8 and RNF168 is important for efficient DNA double-strand break repair. Plos One. 9: e110522. PMID 25337968 DOI: 10.1371/journal.pone.0110522 |
0.385 |
|
2014 |
Acharya S, Kaul Z, Gocha AS, Martinez AR, Harris J, Parvin JD, Groden J. Association of BLM and BRCA1 during Telomere Maintenance in ALT Cells. Plos One. 9: e103819. PMID 25084169 DOI: 10.1371/journal.pone.0103819 |
0.415 |
|
2014 |
Hu Y, Parvin JD. Small ubiquitin-like modifier (SUMO) isoforms and conjugation-independent function in DNA double-strand break repair pathways. The Journal of Biological Chemistry. 289: 21289-95. PMID 24966330 DOI: 10.1074/jbc.C114.582122 |
0.418 |
|
2014 |
Kotian S, Banerjee T, Lockhart A, Huang K, Catalyurek UV, Parvin JD. NUSAP1 influences the DNA damage response by controlling BRCA1 protein levels. Cancer Biology & Therapy. 15: 533-43. PMID 24521615 DOI: 10.4161/Cbt.28019 |
0.465 |
|
2013 |
Tian F, Sharma S, Zou J, Lin SY, Wang B, Rezvani K, Wang H, Parvin JD, Ludwig T, Canman CE, Zhang D. BRCA1 promotes the ubiquitination of PCNA and recruitment of translesion polymerases in response to replication blockade. Proceedings of the National Academy of Sciences of the United States of America. 110: 13558-63. PMID 23901102 DOI: 10.1073/Pnas.1306534110 |
0.509 |
|
2013 |
Wang J, Lan X, Hsu PY, Hsu HK, Huang K, Parvin J, Huang TH, Jin VX. Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation. Bmc Genomics. 14: 70. PMID 23368971 DOI: 10.1186/1471-2164-14-70 |
0.317 |
|
2013 |
Towler WI, Zhang J, Ransburgh DJ, Toland AE, Ishioka C, Chiba N, Parvin JD. Analysis of BRCA1 variants in double-strand break repair by homologous recombination and single-strand annealing. Human Mutation. 34: 439-45. PMID 23161852 DOI: 10.1002/Humu.22251 |
0.46 |
|
2012 |
Kais Z, Chiba N, Ishioka C, Parvin JD. Functional differences among BRCA1 missense mutations in the control of centrosome duplication Oncogene. 31: 799-804. PMID 21725363 DOI: 10.1038/onc.2011.271 |
0.33 |
|
2011 |
Wei L, Lan L, Yasui A, Tanaka K, Saijo M, Matsuzawa A, Kashiwagi R, Maseki E, Hu Y, Parvin JD, Ishioka C, Chiba N. BRCA1 contributes to transcription-coupled repair of DNA damage through polyubiquitination and degradation of Cockayne syndrome B protein. Cancer Science. 102: 1840-7. PMID 21756275 DOI: 10.1111/j.1349-7006.2011.02037.x |
0.49 |
|
2011 |
Kais Z, Barsky SH, Mathsyaraja H, Zha A, Ransburgh DJ, He G, Pilarski RT, Shapiro CL, Huang K, Parvin JD. KIAA0101 interacts with BRCA1 and regulates centrosome number. Molecular Cancer Research : McR. 9: 1091-9. PMID 21673012 DOI: 10.1158/1541-7786.MCR-10-0503 |
0.412 |
|
2011 |
Parvin J, Chiba N, Ransburgh D. Identifying the effects of BRCA1 mutations on homologous recombination using cells that express endogenous wild-type BRCA1. Journal of Visualized Experiments : Jove. PMID 21372787 DOI: 10.3791/2468 |
0.458 |
|
2011 |
Lyakhovich A, Ramirez MJ, Castellanos A, Castella M, Simons AM, Parvin JD, Surralles J. Fanconi anemia protein FANCD2 inhibits TRF1 polyADP-ribosylation through tankyrase1-dependent manner. Genome Integrity. 2: 4. PMID 21314979 DOI: 10.1186/2041-9414-2-4 |
0.781 |
|
2010 |
Gu F, Hsu HK, Hsu PY, Wu J, Ma Y, Parvin J, Huang TH, Jin VX. Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data. Bmc Systems Biology. 4: 170. PMID 21167036 DOI: 10.1186/1752-0509-4-170 |
0.365 |
|
2010 |
Hammond-Martel I, Pak H, Yu H, Rouget R, Horwitz AA, Parvin JD, Drobetsky EA, Affar el B. PI 3 kinase related kinases-independent proteolysis of BRCA1 regulates Rad51 recruitment during genotoxic stress in human cells. Plos One. 5: e14027. PMID 21103343 DOI: 10.1371/Journal.Pone.0014027 |
0.795 |
|
2010 |
Lamber EP, Horwitz AA, Parvin JD. BRCA1 represses amphiregulin gene expression. Cancer Research. 70: 996-1005. PMID 20103632 DOI: 10.1158/0008-5472.Can-09-2842 |
0.776 |
|
2010 |
Ransburgh DJ, Chiba N, Ishioka C, Toland AE, Parvin JD. Identification of breast tumor mutations in BRCA1 that abolish its function in homologous DNA recombination. Cancer Research. 70: 988-95. PMID 20103620 DOI: 10.1158/0008-5472.Can-09-2850 |
0.434 |
|
2010 |
Thakar A, Parvin J, Zlatanova J. BRCA1/BARD1 E3 ubiquitin ligase can modify histones H2A and H2B in the nucleosome particle. Journal of Biomolecular Structure & Dynamics. 27: 399-406. PMID 19916563 DOI: 10.1080/07391102.2010.10507326 |
0.348 |
|
2009 |
Johnson N, Cai D, Kennedy RD, Pathania S, Arora M, Li YC, D'Andrea AD, Parvin JD, Shapiro GI. Cdk1 participates in BRCA1-dependent S phase checkpoint control in response to DNA damage. Molecular Cell. 35: 327-39. PMID 19683496 DOI: 10.1016/J.Molcel.2009.06.036 |
0.4 |
|
2009 |
Taslim C, Wu J, Yan P, Singer G, Parvin J, Huang T, Lin S, Huang K. Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinformatics (Oxford, England). 25: 2334-40. PMID 19561022 DOI: 10.1093/Bioinformatics/Btp384 |
0.31 |
|
2009 |
Parvin JD. The BRCA1-dependent ubiquitin ligase, gamma-tubulin, and centrosomes. Environmental and Molecular Mutagenesis. 50: 649-53. PMID 19274767 DOI: 10.1002/em.20475 |
0.4 |
|
2009 |
Bozdaǧ D, Parvin JD, Catalyurek UV. A biclustering method to discover co-regulated genes using diverse gene expression datasets Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5462: 151-163. DOI: 10.1007/978-3-642-00727-9_16 |
0.348 |
|
2008 |
Kais Z, Parvin JD. Regulation of centrosomes by the BRCA1-dependent ubiquitin ligase. Cancer Biology & Therapy. 7: 1540-3. PMID 18927495 |
0.327 |
|
2008 |
Heine GF, Horwitz AA, Parvin JD. Multiple mechanisms contribute to inhibit transcription in response to DNA damage. The Journal of Biological Chemistry. 283: 9555-61. PMID 18281289 DOI: 10.1074/Jbc.M707700200 |
0.781 |
|
2007 |
Sankaran S, Crone DE, Palazzo RE, Parvin JD. BRCA1 regulates gamma-tubulin binding to centrosomes. Cancer Biology & Therapy. 6: 1853-7. PMID 18087219 DOI: 10.4161/Cbt.6.12.5164 |
0.391 |
|
2007 |
Sankaran S, Crone DE, Palazzo RE, Parvin JD. Aurora-A kinase regulates breast cancer associated gene 1 inhibition of centrosome-dependent microtubule nucleation. Cancer Research. 67: 11186-94. PMID 18056443 DOI: 10.1158/0008-5472.Can-07-2578 |
0.34 |
|
2007 |
Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, Assmann V, Elshamy WM, Rual JF, Levine D, Rozek LS, ... ... Parvin JD, et al. Network modeling links breast cancer susceptibility and centrosome dysfunction. Nature Genetics. 39: 1338-49. PMID 17922014 DOI: 10.1038/Ng.2007.2 |
0.625 |
|
2007 |
Heine GF, Parvin JD. BRCA1 control of steroid receptor ubiquitination. Science's Stke : Signal Transduction Knowledge Environment. 2007: pe34. PMID 17579243 DOI: 10.1126/Stke.3912007Pe34 |
0.365 |
|
2007 |
Horwitz AA, Affar el B, Heine GF, Shi Y, Parvin JD. A mechanism for transcriptional repression dependent on the BRCA1 E3 ubiquitin ligase. Proceedings of the National Academy of Sciences of the United States of America. 104: 6614-9. PMID 17420471 DOI: 10.1073/Pnas.0610481104 |
0.786 |
|
2006 |
Parvin JD, Sankaran S. The BRCA1 E3 ubiquitin ligase controls centrosome dynamics. Cell Cycle (Georgetown, Tex.). 5: 1946-50. PMID 16969086 |
0.369 |
|
2006 |
Sankaran S, Parvin JD. Centrosome function in normal and tumor cells. Journal of Cellular Biochemistry. 99: 1240-50. PMID 16817224 DOI: 10.1002/jcb.21003 |
0.31 |
|
2006 |
Toretsky JA, Erkizan V, Levenson A, Abaan OD, Parvin JD, Cripe TP, Rice AM, Lee SB, Uren A. Oncoprotein EWS-FLI1 activity is enhanced by RNA helicase A. Cancer Research. 66: 5574-81. PMID 16740692 DOI: 10.1158/0008-5472.Can-05-3293 |
0.311 |
|
2006 |
Sankaran S, Starita LM, Simons AM, Parvin JD. Identification of domains of BRCA1 critical for the ubiquitin-dependent inhibition of centrosome function. Cancer Research. 66: 4100-7. PMID 16618730 DOI: 10.1158/0008-5472.Can-05-4430 |
0.78 |
|
2006 |
Simons AM, Horwitz AA, Starita LM, Griffin K, Williams RS, Glover JN, Parvin JD. BRCA1 DNA-binding activity is stimulated by BARD1. Cancer Research. 66: 2012-8. PMID 16489000 DOI: 10.1158/0008-5472.Can-05-3296 |
0.753 |
|
2006 |
Starita LM, Parvin JD. Substrates of the BRCA1-dependent ubiquitin ligase. Cancer Biology & Therapy. 5: 137-41. PMID 16479151 DOI: 10.4161/Cbt.5.2.2479 |
0.657 |
|
2006 |
Horwitz AA, Sankaran S, Parvin JD. Direct stimulation of transcription initiation by BRCA1 requires both its amino and carboxyl termini. The Journal of Biological Chemistry. 281: 8317-20. PMID 16473884 DOI: 10.1074/Jbc.C500475200 |
0.761 |
|
2005 |
Takeda DY, Shibata Y, Parvin JD, Dutta A. Recruitment of ORC or CDC6 to DNA is sufficient to create an artificial origin of replication in mammalian cells. Genes & Development. 19: 2827-36. PMID 16322558 DOI: 10.1101/Gad.1369805 |
0.438 |
|
2005 |
Sankaran S, Starita LM, Groen AC, Ko MJ, Parvin JD. Centrosomal microtubule nucleation activity is inhibited by BRCA1-dependent ubiquitination. Molecular and Cellular Biology. 25: 8656-68. PMID 16166645 DOI: 10.1128/Mcb.25.19.8656-8668.2005 |
0.676 |
|
2005 |
Starita LM, Horwitz AA, Keogh MC, Ishioka C, Parvin JD, Chiba N. BRCA1/BARD1 ubiquitinate phosphorylated RNA polymerase II. The Journal of Biological Chemistry. 280: 24498-505. PMID 15886201 DOI: 10.1074/Jbc.M414020200 |
0.8 |
|
2005 |
Park WH, Margossian S, Horwitz AA, Simons AM, D'Andrea AD, Parvin JD. Direct DNA binding activity of the Fanconi anemia D2 protein. The Journal of Biological Chemistry. 280: 23593-8. PMID 15849361 DOI: 10.1074/Jbc.M503730200 |
0.75 |
|
2005 |
Pujana M, Han J, Starita L, Tewari M, Ahn J, Assmann V, ElShamy W, Rual J, Gelman R, Gunsalus K, Greenberg R, Bohian B, Bertin N, Ayivi-Guedehoussou N, Nathanson K, ... ... Parvin J, et al. A model of the BRCA1/BRCA2 network Breast Cancer Research. 7: 1-1. DOI: 10.1186/Bcr1195 |
0.674 |
|
2004 |
Starita LM, Machida Y, Sankaran S, Elias JE, Griffin K, Schlegel BP, Gygi SP, Parvin JD. BRCA1-dependent ubiquitination of gamma-tubulin regulates centrosome number. Molecular and Cellular Biology. 24: 8457-66. PMID 15367667 DOI: 10.1128/Mcb.24.19.8457-8466.2004 |
0.664 |
|
2004 |
Parvin JD. Overview of history and progress in BRCA1 research: the first BRCA1 decade. Cancer Biology & Therapy. 3: 505-8. PMID 15197353 |
0.476 |
|
2004 |
You F, Chiba N, Ishioka C, Parvin JD. Expression of an amino-terminal BRCA1 deletion mutant causes a dominant growth inhibition in MCF10A cells. Oncogene. 23: 5792-8. PMID 15122325 DOI: 10.1038/sj.onc.1207739 |
0.306 |
|
2003 |
Mondal N, Parvin JD. Transcription from the perspective of the DNA: twists and bumps in the road. Critical Reviews in Eukaryotic Gene Expression. 13: 1-8. PMID 12839093 |
0.381 |
|
2003 |
Starita LM, Parvin JD. The multiple nuclear functions of BRCA1: transcription, ubiquitination and DNA repair. Current Opinion in Cell Biology. 15: 345-50. PMID 12787778 DOI: 10.1016/S0955-0674(03)00042-5 |
0.736 |
|
2003 |
Schlegel BP, Starita LM, Parvin JD. Overexpression of a protein fragment of RNA helicase A causes inhibition of endogenous BRCA1 function and defects in ploidy and cytokinesis in mammary epithelial cells. Oncogene. 22: 983-91. PMID 12592385 DOI: 10.1038/Sj.Onc.1206195 |
0.742 |
|
2002 |
Chiba N, Parvin JD. The BRCA1 and BARD1 association with the RNA polymerase II holoenzyme. Cancer Research. 62: 4222-8. PMID 12154023 |
0.364 |
|
1999 |
Haile DT, Parvin JD. Activation of transcription in vitro by the BRCA1 carboxyl-terminal domain Journal of Biological Chemistry. 274: 2113-2117. PMID 9890972 DOI: 10.1074/jbc.274.4.2113 |
0.452 |
|
1998 |
Anderson SF, Schlegel BP, Nakajima T, Wolpin ES, Parvin JD. BRCA1 protein is linked to the RNA polymerase II holoenzyme complex via RNA helicase A. Nature Genetics. 19: 254-6. PMID 9662397 DOI: 10.1038/930 |
0.414 |
|
1998 |
Saha P, Chen J, Thome KC, Lawlis SJ, Hou ZH, Hendricks M, Parvin JD, Dutta A. Human CDC6/Cdc18 associates with Orc1 and cyclin-cdk and is selectively eliminated from the nucleus at the onset of S phase. Molecular and Cellular Biology. 18: 2758-67. PMID 9566895 DOI: 10.1128/Mcb.18.5.2758 |
0.322 |
|
1998 |
Neish AS, Anderson SF, Schlegel BP, Wei W, Parvin JD. Factors associated with the mammalian RNA polymerase II holoenzyme. Nucleic Acids Research. 26: 847-53. PMID 9443979 DOI: 10.1093/Nar/26.3.847 |
0.332 |
|
1997 |
Scully R, Anderson SF, Chao DM, Wei W, Ye L, Young RA, Livingston DM, Parvin JD. BRCA1 is a component of the RNA polymerase II holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 94: 5605-10. PMID 9159119 DOI: 10.1073/Pnas.94.11.5605 |
0.382 |
|
1993 |
Parvin JD, Sharp PA. DNA topology and a minimal set of basal factors for transcription by RNA polymerase II. Cell. 73: 533-40. PMID 8490964 DOI: 10.1016/0092-8674(93)90140-L |
0.312 |
|
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