| Year |
Citation |
Score |
| 2019 |
Oldfield AJ, Henriques T, Kumar D, Burkholder AB, Cinghu S, Paulet D, Bennett BD, Yang P, Scruggs BS, Lavender CA, Rivals E, Adelman K, Jothi R. NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region. Nature Communications. 10: 3072. PMID 31296853 DOI: 10.1038/S41467-019-10905-7 |
0.346 |
|
| 2018 |
Nguyen TT, Grimm SA, Bushel PR, Li J, Li Y, Bennett BD, Lavender CA, Ward JM, Fargo DC, Anderson CW, Li L, Resnick MA, Menendez D. Revealing a human p53 universe. Nucleic Acids Research. PMID 30107566 DOI: 10.1093/Nar/Gky720 |
0.302 |
|
| 2018 |
Henriques T, Scruggs BS, Inouye MO, Muse GW, Williams LH, Burkholder AB, Lavender CA, Fargo DC, Adelman K. Widespread transcriptional pausing and elongation control at enhancers. Genes & Development. PMID 29378787 DOI: 10.1101/Gad.309351.117 |
0.392 |
|
| 2017 |
Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife. 6. PMID 28346137 DOI: 10.7554/Elife.23249 |
0.372 |
|
| 2017 |
Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Author response: Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity Elife. DOI: 10.7554/Elife.23249.063 |
0.325 |
|
| 2016 |
Lavender CA, Cannady KR, Hoffman JA, Trotter KW, Gilchrist DA, Bennett BD, Burkholder AB, Burd CJ, Fargo DC, Archer TK. Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters. Plos Genetics. 12: e1006224. PMID 27487356 DOI: 10.1371/Journal.Pgen.1006224 |
0.37 |
|
| 2015 |
Lavender CA, Gorelick RJ, Weeks KM. Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes. Plos Computational Biology. 11: e1004230. PMID 25992893 DOI: 10.1371/Journal.Pcbi.1004230 |
0.337 |
|
| 2015 |
Lavender CA, Lorenz R, Zhang G, Tamayo R, Hofacker IL, Weeks KM. Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA. Plos Computational Biology. 11: e1004126. PMID 25992778 DOI: 10.1371/Journal.Pcbi.1004126 |
0.39 |
|
| 2015 |
McGinnis JL, Liu Q, Lavender CA, Devaraj A, McClory SP, Fredrick K, Weeks KM. In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state. Proceedings of the National Academy of Sciences of the United States of America. 112: 2425-30. PMID 25675474 DOI: 10.1073/Pnas.1411514112 |
0.314 |
|
| 2015 |
Shimbo T, Lavender C, Grimm SA, Doi MI, Henriques T, Cannady KR, Murphy KJ, Gilchrist DA, Burkholder A, Hayes JJ, Adelman K, Archer TK, Zaret KS, Wade PA. Abstract 2862: MBD3 regulates chromatin accessibility at active promoters Cancer Research. 75: 2862-2862. DOI: 10.1158/1538-7445.Am2015-2862 |
0.37 |
|
| 2014 |
Homan PJ, Favorov OV, Lavender CA, Kursun O, Ge X, Busan S, Dokholyan NV, Weeks KM. Single-molecule correlated chemical probing of RNA. Proceedings of the National Academy of Sciences of the United States of America. 111: 13858-63. PMID 25205807 DOI: 10.1073/Pnas.1407306111 |
0.38 |
|
| 2012 |
Ding F, Lavender CA, Weeks KM, Dokholyan NV. Three-dimensional RNA structure refinement by hydroxyl radical probing. Nature Methods. 9: 603-8. PMID 22504587 DOI: 10.1038/Nmeth.1976 |
0.378 |
|
| 2012 |
Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, et al. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. Rna (New York, N.Y.). 18: 610-25. PMID 22361291 DOI: 10.1261/Rna.031054.111 |
0.349 |
|
| 2010 |
Lavender CA, Ding F, Dokholyan NV, Weeks KM. Robust and generic RNA modeling using inferred constraints: a structure for the hepatitis C virus IRES pseudoknot domain. Biochemistry. 49: 4931-3. PMID 20545364 DOI: 10.1021/Bi100142Y |
0.381 |
|
| 2010 |
Lavender CA, Ding F, Dokholyan NV, Weeks KM. Correction to Robust and Generic RNA Modeling Using Inferred Constraints: A Structure for the Hepatitis C Virus IRES Pseudoknot Domain Biochemistry. 49: 5968-5968. DOI: 10.1021/Bi100935C |
0.31 |
|
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