Stacey Dewitt Smith, MPhil, PhD - Publications

Affiliations: 
1995-1999 Biology Virginia Polytechnic Institute and State University, Blacksburg, VA, United States 
 1999-2000 Plant Sciences University of Reading, Earley, England, United Kingdom 
 2000-2001 Biological Sciences University of Birmingham, Birmingham, England, United Kingdom 
 2001-2006 Botany University of Wisconsin, Madison, Madison, WI 
 2006-2010 Biology Duke University, Durham, NC 
 2010-2013 BioSci The University of Nebraska - Lincoln, Lincoln, NE 
 2013- EBIO University of Colorado, Boulder, Boulder, CO, United States 
Area:
phylogenetics, trait evolution, evolutionary genetics
Website:
www.colorado.edu/smithlab

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Pezzi PH, Wheeler LC, Freitas LB, Smith SD. Incomplete lineage sorting and hybridization underlie tree discordance in Petunia and related genera (Petunieae, Solanaceae). Molecular Phylogenetics and Evolution. 108136. PMID 38909873 DOI: 10.1016/j.ympev.2024.108136  0.308
2024 Barreto E, Boehm MMA, Ogutcen E, Abrahamczyk S, Kessler M, Bascompte J, Dellinger AS, Bello C, Dehling DM, Duchenne F, Kaehler M, Lagomarsino LP, Lohmann LG, Maglianesi MA, Morlon H, ... ... Smith SD, et al. Macroevolution of the plant-hummingbird pollination system. Biological Reviews of the Cambridge Philosophical Society. PMID 38705863 DOI: 10.1111/brv.13094  0.7
2024 Dellinger AS, Lagomarsino L, Michelangeli F, Dullinger S, Smith SD. The sequential direct and indirect effects of mountain uplift, climatic niche and floral trait evolution on diversification dynamics in an Andean plant clade. Systematic Biology. PMID 38554255 DOI: 10.1093/sysbio/syae011  0.338
2023 Orejuela A, Smith SD, Villanueva B, Deanna R. A new species of Benth. (Solanaceae) from the eastern Andes of Colombia. Phytokeys. 232: 133-144. PMID 37767189 DOI: 10.3897/phytokeys.232.108474  0.378
2023 Dellinger AS, Hamilton AM, Wessinger CA, Smith SD. Opposing Patterns of Altitude-Driven Pollinator Turnover in the Tropical and Temperate Americas. The American Naturalist. 202: 152-165. PMID 37531276 DOI: 10.1086/725017  0.723
2023 Deanna R, Martínez C, Manchester S, Wilf P, Campos A, Knapp S, Chiarini FE, Barboza GE, Bernardello G, Sauquet H, Dean E, Orejuela A, Smith SD. Fossil berries reveal global radiation of the nightshade family by the early Cenozoic. The New Phytologist. PMID 36960534 DOI: 10.1111/nph.18904  0.439
2022 Powell AF, Zhang J, Hauser D, Vilela JA, Hu A, Gates DJ, Mueller LA, Li FW, Strickler SR, Smith SD. Genome sequence for the blue-flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae. The Plant Genome. e20223. PMID 35666039 DOI: 10.1002/tpg2.20223  0.609
2022 Wheeler LC, Walker JF, Ng J, Deanna R, Dunbar-Wallis A, Backes A, Pezzi PH, Palchetti MV, Robertson HM, Monaghan A, Brandão de Freitas L, Barboza GE, Moyroud E, Smith SD. Transcription factors evolve faster than their structural gene targets in the flavonoid pigment pathway. Molecular Biology and Evolution. PMID 35212724 DOI: 10.1093/molbev/msac044  0.347
2020 Liu S, Smith SD. Phylogeny and Biogeography of South American Marsh Pitcher Plant Genus Heliamphora (Sarraceniaceae) Endemic to the Guiana Highlands. Molecular Phylogenetics and Evolution. 106961. PMID 32956799 DOI: 10.1016/J.Ympev.2020.106961  0.498
2020 Smith SD, Pennell MW, Dunn CW, Edwards SV. Phylogenetics is the New Genetics (for Most of Biodiversity). Trends in Ecology & Evolution. 35: 415-425. PMID 32294423 DOI: 10.1016/J.Tree.2020.01.005  0.374
2019 Larter M, Dunbar-Wallis A, Berardi AE, Smith SD. Developmental control of convergent floral pigmentation across evolutionary timescales. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 31269317 DOI: 10.1002/Dvdy.82  0.431
2019 Wheeler LC, Smith SD. Computational modeling of anthocyanin pathway evolution: Biases, hotspots, and trade-offs. Integrative and Comparative Biology. PMID 31120530 DOI: 10.1093/Icb/Icz049  0.348
2019 Dupin J, Smith SD. Integrating historical biogeography and environmental niche evolution to understand the geographic distribution of Datureae. American Journal of Botany. PMID 31059141 DOI: 10.1002/Ajb2.1281  0.408
2019 Deanna R, Larter MD, Barboza GE, Smith SD. Repeated evolution of a morphological novelty: a phylogenetic analysis of the inflated fruiting calyx in the Physalideae tribe (Solanaceae). American Journal of Botany. PMID 30779447 DOI: 10.1002/Ajb2.1242  0.438
2018 Ng J, Smith SD. Why Are Red Flowers So Rare? Testing the Macroevolutionary Causes of Tippiness. Journal of Evolutionary Biology. PMID 30256485 DOI: 10.1111/Jeb.13381  0.481
2018 Ng J, Freitas LB, Smith SD. Stepwise evolution of floral pigmentation predicted by biochemical pathway structure. Evolution; International Journal of Organic Evolution. PMID 30187462 DOI: 10.1111/Evo.13589  0.363
2018 Larter M, Dunbar-Wallis A, Berardi AE, Smith SD. Convergent evolution at the pathway level: predictable regulatory changes during flower color transitions. Molecular Biology and Evolution. PMID 29878153 DOI: 10.1093/Molbev/Msy117  0.401
2018 Gates DJ, Pilson D, Smith SD. Filtering of target sequence capture individuals facilitates species tree construction in the plant subtribe Iochrominae (Solanaceae). Molecular Phylogenetics and Evolution. PMID 29432851 DOI: 10.1016/J.Ympev.2018.02.002  0.752
2018 Moghe GD, Smith SD. The push and pull of plant specialized metabolism underlies a long-standing, colorful mystery. The New Phytologist. 217: 471-473. PMID 29271040 DOI: 10.1111/Nph.14914  0.328
2018 Dupin J, Smith SD. Phylogenetics of Datureae (Solanaceae), including description of the new genus Trompettia and re-circumscription of the tribe Taxon. 67: 359-375. DOI: 10.12705/672.6  0.356
2018 Deanna R, Smith SD, Särkinen T, Chiarini F. Patterns of chromosomal evolution in the florally diverse Andean clade Iochrominae (Solanaceae) Perspectives in Plant Ecology, Evolution and Systematics. 35: 31-43. DOI: 10.1016/J.Ppees.2018.09.004  0.366
2017 Smith SD, Kriebel R. Convergent evolution of floral shape tied to pollinator shifts in Iochrominae (Solanaceae). Evolution; International Journal of Organic Evolution. PMID 29280478 DOI: 10.1111/Evo.13416  0.417
2017 Fernandez-Hilario R, Smith SD. A new species of Saracha (Solanaceae) from the Central Andes of Peru. Phytokeys. 31-43. PMID 29033658 DOI: 10.3897/Phytokeys.85.12607  0.447
2017 Gates DJ, Olson BJSC, Clemente TE, Smith SD. A novel R3 MYB transcriptional repressor associated with the loss of floral pigmentation in Iochroma. The New Phytologist. PMID 29023752 DOI: 10.1111/Nph.14830  0.657
2017 McCarthy EW, Berardi AE, Smith SD, Litt A. Related allopolyploids display distinct floral pigment profiles and transgressive pigments. American Journal of Botany. PMID 28057690 DOI: 10.3732/Ajb.1600350  0.384
2016 Gates DJ, Strickler SR, Mueller LA, Olson BJ, Smith SD. Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae. Journal of Molecular Evolution. PMID 27364496 DOI: 10.1007/S00239-016-9750-Z  0.696
2016 Berardi AE, Hildreth SB, Helm RF, Winkel BS, Smith SD. Evolutionary correlations in flavonoid production across flowers and leaves in the Iochrominae (Solanaceae). Phytochemistry. PMID 27291343 DOI: 10.1016/J.Phytochem.2016.05.007  0.386
2016 Ho WW, Smith SD. Molecular evolution of anthocyanin pigmentation genes following losses of flower color. Bmc Evolutionary Biology. 16: 98. PMID 27161359 DOI: 10.1186/S12862-016-0675-3  0.368
2016 O'Meara BC, Smith SD, Armbruster WS, Harder LD, Hardy CR, Hileman LC, Hufford L, Litt A, Magallón S, Smith SA, Stevens PF, Fenster CB, Diggle PK. Non-equilibrium dynamics and floral trait interactions shape extant angiosperm diversity. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27147092 DOI: 10.1098/Rspb.2015.2304  0.398
2016 Ng J, Smith SD. How to make a red flower: the combinatorial effect of pigments. Aob Plants. PMID 26933150 DOI: 10.1093/Aobpla/Plw013  0.428
2016 González SL, Smith SD. Iochroma Mioneii (Solanaceae), Una Nueva Especie Del Norte Del Perú Arnaldoa. 23: 9-20. DOI: 10.22497/231  0.357
2016 Dupin J, Matzke NJ, Särkinen T, Knapp S, Olmstead RG, Bohs L, Smith SD. Bayesian estimation of the global biogeographical history of the Solanaceae Journal of Biogeography. 44: 887-899. DOI: 10.1111/Jbi.12898  0.493
2015 Smith SD. Pleiotropy and the evolution of floral integration. The New Phytologist. PMID 26224529 DOI: 10.1111/Nph.13583  0.385
2015 Ng J, Smith SD. Widespread flower color convergence in Solanaceae via alternate biochemical pathways. The New Phytologist. PMID 26224118 DOI: 10.1111/Nph.13576  0.45
2015 Smith SD, Goldberg EE. Tempo and mode of flower color evolution. American Journal of Botany. 102: 1014-25. PMID 26199360 DOI: 10.3732/Ajb.1500163  0.412
2015 Coburn RA, Griffin RH, Smith SD. Genetic basis for a rare floral mutant in an Andean species of Solanaceae. American Journal of Botany. 102: 264-72. PMID 25667079 DOI: 10.3732/Ajb.1400395  0.4
2015 Manchego MAC, Smith SD, Gonzáles SL. A new and endangered species of Iochroma (Solanaceae) from the cloud forests of central Peru and its phylogenetic position in Iochrominae Phytotaxa. 227: 147-157. DOI: 10.11646/Phytotaxa.227.2.4  0.454
2014 Ng J, Smith SD. How traits shape trees: new approaches for detecting character state-dependent lineage diversification. Journal of Evolutionary Biology. 27: 2035-45. PMID 25066512 DOI: 10.1111/Jeb.12460  0.445
2014 Muchhala N, Johnsen S, Smith SD. Competition for hummingbird pollination shapes flower color variation in Andean solanaceae. Evolution; International Journal of Organic Evolution. 68: 2275-86. PMID 24766107 DOI: 10.1111/Evo.12441  0.715
2013 Smith SD, Wang S, Rausher MD. Functional evolution of an anthocyanin pathway enzyme during a flower color transition. Molecular Biology and Evolution. 30: 602-12. PMID 23155005 DOI: 10.1093/Molbev/Mss255  0.63
2013 Abella SR, Smith SD. Annual-perennial plant relationships and species selection for desert restoration Journal of Arid Land. 5: 298-309. DOI: 10.1007/S40333-013-0172-0  0.389
2012 Weisrock DW, Smith SD, Chan LM, Biebouw K, Kappeler PM, Yoder AD. Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics. Molecular Biology and Evolution. 29: 1615-30. PMID 22319174 DOI: 10.1093/Molbev/Mss008  0.486
2011 Johnson MT, Fitzjohn RG, Smith SD, Rausher MD, Otto SP. Loss of sexual recombination and segregation is associated with increased diversification in evening primroses. Evolution; International Journal of Organic Evolution. 65: 3230-40. PMID 22023588 DOI: 10.1111/J.1558-5646.2011.01378.X  0.654
2011 Smith SD, Rausher MD. Gene loss and parallel evolution contribute to species difference in flower color. Molecular Biology and Evolution. 28: 2799-810. PMID 21551271 DOI: 10.1093/Molbev/Msr109  0.649
2011 Rosas-Guerrero V, Quesada M, Armbruster WS, Pérez-Barrales R, Smith SD. Influence of pollination specialization and breeding system on floral integration and phenotypic variation in Ipomoea. Evolution; International Journal of Organic Evolution. 65: 350-64. PMID 20874738 DOI: 10.1111/J.1558-5646.2010.01140.X  0.454
2011 Smith SD, González SL. A new species of Iochroma (Solanaceae) from Ecuador Novon. 21: 491-495. DOI: 10.3417/2010061  0.447
2010 Smith SD. Using phylogenetics to detect pollinator-mediated floral evolution New Phytologist. 188: 354-363. PMID 20497346 DOI: 10.1111/J.1469-8137.2010.03292.X  0.405
2010 Johnson MT, Smith SD, Rausher MD. Effects of plant sex on range distributions and allocation to reproduction. The New Phytologist. 186: 769-79. PMID 20180909 DOI: 10.1111/J.1469-8137.2010.03201.X  0.732
2009 Johnson MT, Smith SD, Rausher MD. Plant sex and the evolution of plant defenses against herbivores. Proceedings of the National Academy of Sciences of the United States of America. 106: 18079-84. PMID 19617572 DOI: 10.1073/Pnas.0904695106  0.726
2009 Smith SD, Ané C, Baum DA. Macroevolutionary tests of pollination syndromes: A reply to fenster et al. Evolution. 63: 2763-2767. DOI: 10.1111/J.1558-5646.2009.00732.X  0.583
2008 Paape T, Igic B, Smith SD, Olmstead R, Bohs L, Kohn JR. A 15-Myr-old genetic bottleneck. Molecular Biology and Evolution. 25: 655-63. PMID 18209194 DOI: 10.1093/Molbev/Msn016  0.419
2008 Smith SD, Ané C, Baum DA. The role of pollinator shifts in the floral diversification of Iochroma (Solanaceae). Evolution; International Journal of Organic Evolution. 62: 793-806. PMID 18208567 DOI: 10.1111/J.1558-5646.2008.00327.X  0.655
2008 Smith SD, Hall SJ, Izquierdo PR, Baum DA. Comparative pollination biology of sympatric and allopatric Andean Iochroma (Solanaceae) Annals of the Missouri Botanical Garden. 95: 600-617. DOI: 10.3417/2007037  0.64
2007 Ané C, Larget B, Baum DA, Smith SD, Rokas A. Bayesian estimation of concordance among gene trees. Molecular Biology and Evolution. 24: 412-26. PMID 17095535 DOI: 10.1093/Molbev/Msl170  0.568
2007 Smith SD, Baum DA. Systematics of iochrominae (Solanaceae): Patterns in floral diversity and interspecific crossability Acta Horticulturae. 745: 241-254.  0.483
2006 Smith SD, Baum DA. Phylogenetics of the florally diverse Andean clade Iochrominae (Solanaceae). American Journal of Botany. 93: 1140-53. PMID 21642180 DOI: 10.3732/Ajb.93.8.1140  0.623
2005 Baum DA, Smith SD, Donovan SS. Evolution. The tree-thinking challenge. Science (New York, N.Y.). 310: 979-80. PMID 16284166 DOI: 10.1126/Science.1117727  0.585
2002 Smith SD, Peralta IE. Ecogeographic surveys as tools for analyzing potential reproductive isolating mechanisms: An example using Solanum juglandifolium Dunal, S. ochranthum Dunal, S. lycopersicoides Dunal, and S. sitiens I. M. Johnston Taxon. 51: 341-349. DOI: 10.2307/1554902  0.406
2002 Smith SD, Knapp S. The natural history of reproduction in Solanum and Lycianthes (Solanaceae) in a subtropical moist forest Bulletin of the Natural History Museum. Botany Series. 32: 125-136. DOI: 10.1017/S0968044602000051  0.534
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