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Nozomi Ando, Ph.D. - Publications

Affiliations: 
2014-2018 Princeton University, Princeton, NJ 
 2018- Cornell University, Ithaca, NY, United States 
Area:
x-ray, synchrotron radiation, enzymes
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sun X, Alfermann J, Li H, Watkins MB, Chen YT, Morrell TE, Mayerthaler F, Wang CY, Komatsuzaki T, Chu JW, Ando N, Mootz HD, Yang H. Subdomain dynamics enable chemical chain reactions in non-ribosomal peptide synthetases. Nature Chemistry. PMID 38049653 DOI: 10.1038/s41557-023-01361-4  0.63
2023 Nam D, Bacik JP, Khade RL, Aguilera MC, Wei Y, Villada JD, Neidig ML, Zhang Y, Ando N, Fasan R. Mechanistic manifold in a hemoprotein-catalyzed cyclopropanation reaction with diazoketone. Nature Communications. 14: 7985. PMID 38042860 DOI: 10.1038/s41467-023-43559-7  0.7
2023 Meisburger SP, Ando N. Processing macromolecular diffuse scattering data. Methods in Enzymology. 688: 43-86. PMID 37748832 DOI: 10.1016/bs.mie.2023.06.010  0.668
2023 Pei X, Bhatt N, Wang H, Ando N, Meisburger SP. Introduction to diffuse scattering and data collection. Methods in Enzymology. 688: 1-42. PMID 37748823 DOI: 10.1016/bs.mie.2023.07.007  0.661
2023 Illava G, Gillilan R, Ando N. Development of in-line anoxic small-angle X-ray scattering and structural characterization of an oxygen-sensing transcriptional regulator. The Journal of Biological Chemistry. 105039. PMID 37442238 DOI: 10.1016/j.jbc.2023.105039  0.78
2023 Watkins MB, Wang H, Burnim A, Ando N. Conformational switching and flexibility in cobalamin-dependent methionine synthase studied by small-angle X-ray scattering and cryoelectron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 120: e2302531120. PMID 37339208 DOI: 10.1073/pnas.2302531120  0.805
2023 Meisburger SP, Ando N. Processing macromolecular diffuse scattering data. Biorxiv : the Preprint Server For Biology. PMID 37333125 DOI: 10.1101/2023.06.04.543637  0.668
2023 Illava G, Gillilan R, Ando N. Development of in-line anoxic small-angle X-ray scattering and structural characterization of an oxygen-sensing transcriptional regulator. Biorxiv : the Preprint Server For Biology. PMID 37292723 DOI: 10.1101/2023.05.18.541370  0.781
2023 Meisburger SP, Case DA, Ando N. Robust total X-ray scattering workflow to study correlated motion of proteins in crystals. Nature Communications. 14: 1228. PMID 36869043 DOI: 10.1038/s41467-023-36734-3  0.675
2023 Watkins MB, Wang H, Burnim A, Ando N. Conformational switching and flexibility in cobalamin-dependent methionine synthase studied by small-angle X-ray scattering and cryo-electron microscopy. Biorxiv : the Preprint Server For Biology. PMID 36798380 DOI: 10.1101/2023.02.11.528079  0.803
2022 Byer AS, Pei X, Patterson MG, Ando N. Small-angle X-ray scattering studies of enzymes. Current Opinion in Chemical Biology. 72: 102232. PMID 36462455 DOI: 10.1016/j.cbpa.2022.102232  0.815
2022 Miller RC, Cummings C, Huang Q, Ando N, Gillilan RE. Inline SAXS-coupled chromatography under extreme hydrostatic pressure. Protein Science : a Publication of the Protein Society. e4489. PMID 36320105 DOI: 10.1002/pro.4489  0.471
2022 Burnim AA, Xu D, Spence MA, Jackson C, Ando N. Analysis of insertions and extensions in the functional evolution of the ribonucleotide reductase family. Protein Science : a Publication of the Protein Society. e4483. PMID 36307939 DOI: 10.1002/pro.4483  0.781
2022 Burnim AA, Spence MA, Xu D, Jackson CJ, Ando N. Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade. Elife. 11. PMID 36047668 DOI: 10.7554/eLife.79790  0.784
2022 Iannuzzelli JA, Bacik JP, Moore EJ, Shen Z, Irving EM, Vargas DA, Khare SD, Ando N, Fasan R. Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization. Biochemistry. PMID 35612958 DOI: 10.1021/acs.biochem.2c00033  0.726
2021 Xu D, Meisburger SP, Ando N. Correlated Motions in Structural Biology. Biochemistry. PMID 34291898 DOI: 10.1021/acs.biochem.1c00420  0.694
2021 Meisburger SP, Xu D, Ando N. : a general method to deconvolve X-ray scattering data from evolving mixtures. Iucrj. 8: 225-237. PMID 33708400 DOI: 10.1107/S2052252521000555  0.69
2021 Ando N, Barquera B, Bartlett DH, Boyd E, Burnim AA, Byer AS, Colman D, Gillilan RE, Gruebele M, Makhatadze G, Royer CA, Shock E, Wand AJ, Watkins MB. The Molecular Basis for Life in Extreme Environments. Annual Review of Biophysics. PMID 33637008 DOI: 10.1146/annurev-biophys-100120-072804  0.745
2020 Corless EI, Saad Imran SM, Watkins MB, Bacik JP, Mattice J, Patterson A, Danyal K, Soffe M, Kitelinger R, Seefeldt LC, Origanti SS, Bennett B, Bothner B, Ando N, Antony E. The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and relieved upon ATP binding. The Journal of Biological Chemistry. 100107. PMID 33434584 DOI: 10.1074/jbc.RA120.016278  0.598
2020 Corless EI, Saad Imran SM, Watkins MB, Bacik JP, Mattice J, Patterson A, Danyal K, Soffe M, Kitelinger R, Seefeldt LC, Origanti SS, Bennett B, Bothner B, Ando N, Antony E. The flexible N-terminus of BchL autoinhibits activity through interaction with its [4Fe-4S] cluster and relieved upon ATP binding. The Journal of Biological Chemistry. PMID 33219127 DOI: 10.1074/jbc.RA120.016278  0.775
2020 Meisburger SP, Case DA, Ando N. Diffuse X-ray scattering from correlated motions in a protein crystal. Nature Communications. 11: 1271. PMID 32152274 DOI: 10.1038/S41467-020-14933-6  0.707
2019 Thomas WC, Brooks FP, Burnim AA, Bacik JP, Stubbe J, Kaelber JT, Chen JZ, Ando N. Convergent allostery in ribonucleotide reductase. Nature Communications. 10: 2653. PMID 31201319 DOI: 10.1038/S41467-019-10568-4  0.792
2019 Tinoco A, Wei Y, Bacik JP, Carminati DM, Moore EJ, Ando N, Zhang Y, Fasan R. Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase. Acs Catalysis. 9: 1514-1524. PMID 31134138 DOI: 10.1021/Acscatal.8B04073  0.728
2019 Khan CA, Meisburger SP, Ando N, Fitzpatrick PF. The phenylketonuria-associated substitution R68S converts phenylalanine hydroxylase to a constitutively active enzyme but reduces its stability. The Journal of Biological Chemistry. PMID 30674554 DOI: 10.1074/Jbc.Ra118.006477  0.69
2019 Meisburger S, Case D, Ando N. Challenges in measurement and interpretation of scattering from protein crystals Acta Crystallographica Section A. 75. DOI: 10.1107/S2053273319091186  0.679
2019 Thomas WC, Brooks FP, Burnim AA, Bacik J, Stubbe J, Kaelber JT, Chen J, Ando N. Mapping allosteric transitions of an enzyme with SAXS, cryo-EM and crystallography Acta Crystallographica Section a Foundations and Advances. 75: a14-a14. DOI: 10.1107/S0108767319099859  0.738
2019 Case DA, Meisburger SP, Ando N. MD simulations of total X-ray scattering in protein crystals Acta Crystallographica Section a Foundations and Advances. 75: a70-a70. DOI: 10.1107/S010876731909929X  0.373
2018 Parker MJ, Maggiolo AO, Thomas WC, Kim A, Meisburger SP, Ando N, Boal AK, Stubbe J. An endogenous dAMP ligand in class Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP. Proceedings of the National Academy of Sciences of the United States of America. PMID 29712847 DOI: 10.1073/Pnas.1800356115  0.771
2018 Meisburger SP, Case DA, Ando N. Correlated motions from protein crystallography Acta Crystallographica Section a Foundations and Advances. 74: a70-a70. DOI: 10.1107/S0108767318099294  0.654
2018 Watkins MB, Meisburger SP, Ando N. Characterizing solution dynamics of highly flexible enzymes Acta Crystallographica Section a Foundations and Advances. 74: a226-a226. DOI: 10.1107/S0108767318097738  0.747
2017 Shoemaker S, Ando N. X-rays in the Cryo-EM Era: Structural Biology's Dynamic Future. Biochemistry. PMID 29227642 DOI: 10.1021/Acs.Biochem.7B01031  0.682
2017 Meisburger SP, Ando N. Correlated Motions from Crystallography beyond Diffraction. Accounts of Chemical Research. 50: 580-583. PMID 28945428 DOI: 10.1021/Acs.Accounts.6B00562  0.709
2017 Davis KM, Schramma KR, Hansen WA, Bacik JP, Khare SD, Seyedsayamdost MR, Ando N. Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition. Proceedings of the National Academy of Sciences of the United States of America. PMID 28893989 DOI: 10.1073/Pnas.1703663114  0.772
2017 Meisburger SP, Thomas WC, Watkins MB, Ando N. X-ray Scattering Studies of Protein Structural Dynamics. Chemical Reviews. PMID 28558231 DOI: 10.1021/Acs.Chemrev.6B00790  0.797
2017 Meisburger S, Taylor A, Khan C, Zhang S, Fitzpatrick P, Ando N. A new method for computational purification of complex mixtures by chromatography-coupled SAXS Acta Crystallographica Section a Foundations and Advances. 73: a119-a119. DOI: 10.1107/S0108767317098816  0.642
2016 Rustiguel JK, Soares RO, Meisburger SP, Davis KM, Malzbender KL, Ando N, Dias-Baruffi M, Nonato MC. Full-length model of the human galectin-4 and insights into dynamics of inter-domain communication. Scientific Reports. 6: 33633. PMID 27642006 DOI: 10.1038/Srep33633  0.789
2016 Meisburger SP, Taylor AB, Khan CA, Zhang S, Fitzpatrick PF, Ando N. Domain movements upon activation of phenylalanine hydroxylase characterized by crystallography and chromatography-coupled small-angle X-ray scattering. Journal of the American Chemical Society. PMID 27145334 DOI: 10.1021/Jacs.6B01563  0.743
2016 Ando N, Li H, Brignole EJ, Thompson S, McLaughlin MI, Page JE, Asturias FJ, Stubbe J, Drennan CL. Allosteric Inhibition of Human Ribonucleotide Reductase by dATP Entails the Stabilization of a Hexamer. Biochemistry. PMID 26727048 DOI: 10.1021/Acs.Biochem.5B01207  0.556
2014 Skou S, Gillilan RE, Ando N. Synchrotron-based small-angle X-ray scattering of proteins in solution. Nature Protocols. 9: 1727-39. PMID 24967622 DOI: 10.1038/Nprot.2014.116  0.406
2013 Minnihan EC, Ando N, Brignole EJ, Olshansky L, Chittuluru J, Asturias FJ, Drennan CL, Nocera DG, Stubbe J. Generation of a stable, aminotyrosyl radical-induced α2β2 complex of Escherichia coli class Ia ribonucleotide reductase. Proceedings of the National Academy of Sciences of the United States of America. 110: 3835-40. PMID 23431160 DOI: 10.1073/Pnas.1220691110  0.556
2012 Bewley KD, Firer-Sherwood MA, Mock JY, Ando N, Drennan CL, Elliott SJ. Mind the gap: diversity and reactivity relationships among multihaem cytochromes of the MtrA/DmsE family. Biochemical Society Transactions. 40: 1268-73. PMID 23176466 DOI: 10.1042/Bst20120106  0.547
2012 Ando N, Kung Y, Can M, Bender G, Ragsdale SW, Drennan CL. Transient B12-dependent methyltransferase complexes revealed by small-angle X-ray scattering. Journal of the American Chemical Society. 134: 17945-54. PMID 23051056 DOI: 10.1021/Ja3055782  0.717
2012 Zimanyi CM, Ando N, Brignole EJ, Asturias FJ, Stubbe J, Drennan CL. Tangled up in knots: structures of inactivated forms of E. coli class Ia ribonucleotide reductase. Structure (London, England : 1993). 20: 1374-83. PMID 22727814 DOI: 10.1016/J.Str.2012.05.009  0.62
2012 Wang S, Meng YF, Ando N, Tate M, Krasnicki S, Yan CS, Liang Q, Lai J, Mao HK, Gruner SM, Hemley RJ. Single-crystal CVD diamonds as small-angle X-ray scattering windows for high-pressure research. Journal of Applied Crystallography. 45: 453-457. PMID 22675230 DOI: 10.1107/S0021889812010722  0.779
2012 Brignole EJ, Ando N, Zimanyi CM, Drennan CL. The prototypic class Ia ribonucleotide reductase from Escherichia coli: still surprising after all these years. Biochemical Society Transactions. 40: 523-30. PMID 22616862 DOI: 10.1042/Bst20120081  0.558
2012 Kung Y, Ando N, Doukov TI, Blasiak LC, Bender G, Seravalli J, Ragsdale SW, Drennan CL. Visualizing molecular juggling within a B12-dependent methyltransferase complex. Nature. 484: 265-9. PMID 22419154 DOI: 10.1038/Nature10916  0.713
2011 Ando N, Brignole EJ, Zimanyi CM, Funk MA, Yokoyama K, Asturias FJ, Stubbe J, Drennan CL. Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase. Proceedings of the National Academy of Sciences of the United States of America. 108: 21046-51. PMID 22160671 DOI: 10.1073/Pnas.1112715108  0.727
2011 Firer-Sherwood MA, Ando N, Drennan CL, Elliott SJ. Solution-based structural analysis of the decaheme cytochrome, MtrA, by small-angle X-ray scattering and analytical ultracentrifugation. The Journal of Physical Chemistry. B. 115: 11208-14. PMID 21838277 DOI: 10.1021/Jp203603R  0.614
2009 Barstow B, Ando N, Kim CU, Gruner SM. Coupling of pressure-induced structural shifts to spectral changes in a yellow fluorescent protein. Biophysical Journal. 97: 1719-27. PMID 19751677 DOI: 10.1016/J.Bpj.2009.06.039  0.775
2008 Ando N, Barstow B, Baase WA, Fields A, Matthews BW, Gruner SM. Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation. Biochemistry. 47: 11097-109. PMID 18816066 DOI: 10.1021/Bi801287M  0.774
2008 Barstow B, Ando N, Kim CU, Gruner SM. Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proceedings of the National Academy of Sciences of the United States of America. 105: 13362-6. PMID 18768811 DOI: 10.1073/Pnas.0802252105  0.783
2008 Ando N, Chenevier P, Novak M, Tate MW, Gruner SM. High hydrostatic pressure small-angle X-ray scattering cell for protein solution studies featuring diamond windows and disposable sample cells Journal of Applied Crystallography. 41: 167-175. DOI: 10.1107/S0021889807056944  0.735
2006 Batra A, Cohen C, Kim H, Winey KI, Ando N, Gruner SM. Counterion effect on the rheology and morphology of tailored poly(dimethylsiloxane) ionomers Macromolecules. 39: 1630-1638. DOI: 10.1021/Ma052275A  0.514
2005 Polozova A, Li X, Shangguan T, Meers P, Schuette DR, Ando N, Gruner SM, Perkins WR. Formation of homogeneous unilamellar liposomes from an interdigitated matrix. Biochimica Et Biophysica Acta. 1668: 117-25. PMID 15670737 DOI: 10.1016/J.Bbamem.2004.11.012  0.756
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