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Daniel M. Gatti, Ph.D. - Publications

Affiliations: 
2010 Environmental Sciences & Engineering University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Bioinformatics Biology, Genetics
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58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Gatti DM, Tyler AL, Mahoney JM, Churchill GA, Yener B, Koyuncu D, Gurcan MN, Niazi MK, Tavolara T, Gower A, Dayao D, McGlone E, Ginese ML, Specht A, Alsharaydeh A, et al. Systems genetics uncover new loci containing functional gene candidates in Mycobacterium tuberculosis-infected Diversity Outbred mice. Plos Pathogens. 20: e1011915. PMID 38861581 DOI: 10.1371/journal.ppat.1011915  0.364
2024 O'Connor C, Keele GR, Martin W, Stodola T, Gatti D, Hoffman BR, Korstanje R, Churchill GA, Reinholdt LG. Unraveling the genetics of arsenic toxicity with cellular morphology QTL. Plos Genetics. 20: e1011248. PMID 38662777 DOI: 10.1371/journal.pgen.1011248  0.375
2023 O'Connor C, Keele GR, Martin W, Stodola T, Gatti D, Hoffman BR, Korstanje R, Churchill GA, Reinholdt LG. Cell morphology QTL reveal gene by environment interactions in a genetically diverse cell population. Biorxiv : the Preprint Server For Biology. PMID 38014303 DOI: 10.1101/2023.11.18.567597  0.335
2022 Vincent M, Gerdes Gyuricza I, Keele GR, Gatti DM, Keller MP, Broman KW, Churchill GA. QTLViewer: An interactive webtool for genetic analysis in the Collaborative Cross and Diversity Outbred mouse populations. G3 (Bethesda, Md.). PMID 35703938 DOI: 10.1093/g3journal/jkac146  0.363
2022 Parker CC, Philip VM, Gatti DM, Kasparek S, Kreuzman AM, Kuffler L, Mansky B, Masneuf S, Sharif K, Sluys E, Taterra D, Taylor WM, Thomas M, Polesskaya O, Palmer AA, et al. Genome-wide association mapping of ethanol sensitivity in the Diversity Outbred mouse population. Alcoholism, Clinical and Experimental Research. PMID 35383961 DOI: 10.1111/acer.14825  0.349
2020 Ouellette AR, Neuner SM, Dumitrescu L, Anderson LC, Gatti DM, Mahoney ER, Bubier JA, Churchill G, Peters L, Huentelman MJ, Herskowitz JH, Yang HS, Smith AN, Reitz C, Kunkle BW, et al. Cross-Species Analyses Identify Dlgap2 as a Regulator of Age-Related Cognitive Decline and Alzheimer's Dementia. Cell Reports. 32: 108091. PMID 32877673 DOI: 10.1016/J.Celrep.2020.108091  0.35
2020 Skelly DA, Czechanski A, Byers C, Aydin S, Spruce C, Olivier C, Choi K, Gatti DM, Raghupathy N, Keele GR, Stanton A, Vincent M, Dion S, Greenstein I, Pankratz M, et al. Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency. Cell Stem Cell. PMID 32795400 DOI: 10.1016/J.Stem.2020.07.005  0.463
2020 You D, Lyn-Cook LE, Gatti DM, Bell N, Mayeux PR, James LP, Mattes WB, Larson GJ, Harrill AH. Nitrosative stress and lipid homeostasis as a mechanism for zileuton hepatotoxicity and resistance in genetically sensitive mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 32170957 DOI: 10.1093/Toxsci/Kfaa037  0.35
2020 Keenan BT, Galante RJ, Lian J, Simecek P, Gatti DM, Zhang L, Lim DC, Svenson KL, Churchill GA, Pack AI. High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains. Sleep. PMID 32074270 DOI: 10.1093/Sleep/Zsz278  0.345
2019 Kemis JH, Linke V, Barrett KL, Boehm FJ, Traeger LL, Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Churchill GA, Amador-Noguez D, Russell JD, Yandell BS, Broman KW, et al. Genetic determinants of gut microbiota composition and bile acid profiles in mice. Plos Genetics. 15: e1008073. PMID 31465442 DOI: 10.1371/Journal.Pgen.1008073  0.445
2019 Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Vincent M, Mitok KA, Wang Z, Ishimura T, Simonett SP, Emfinger CH, Das R, Beck T, Kendziorski C, Broman KW, et al. Gene loci associated with insulin secretion in islets from non-diabetic mice. The Journal of Clinical Investigation. 130. PMID 31343992 DOI: 10.1172/Jci129143  0.355
2019 Recla JM, Bubier JA, Gatti DM, Ryan JL, Long KH, Robledo RF, Glidden NC, Hou G, Churchill GA, Maser RS, Zhang ZW, Young EE, Chesler EJ, Bult CJ. Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response. Pain. 160: 1740-1753. PMID 31335644 DOI: 10.1097/J.Pain.0000000000001571  0.448
2019 Zeiss CJ, Gatti DM, Toro-Salazar O, Davis C, Lutz CM, Spinale F, Stearns T, Furtado MB, Churchill GA. Doxorubicin-Induced Cardiotoxicity in Collaborative Cross (CC) Mice Recapitulates Individual Cardiotoxicity in Humans. G3 (Bethesda, Md.). PMID 31263061 DOI: 10.1534/G3.119.400232  0.329
2019 Mesner LD, Calabrese GM, Al-Barghouthi B, Gatti DM, Sundberg JP, Churchill GA, Godfrey DA, Ackert-Bicknell CL, Farber CR. Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass. Plos Genetics. 15: e1008123. PMID 31042701 DOI: 10.1371/Journal.Pgen.1008123  0.394
2019 Recla JM, Bubier JA, Gatti DM, Ryan JL, Long KH, Robledo RF, Glidden NC, Hou G, Churchill GA, Maser RS, Zhang ZW, Young EE, Chesler EJ, Bult CJ. Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response. Pain. PMID 30925521 DOI: 10.1097/j.pain.0000000000001571  0.347
2019 Broman KW, Gatti DM, Svenson KL, Sen Ś, Churchill GA. Cleaning Genotype Data from Diversity Outbred Mice. G3 (Bethesda, Md.). PMID 30877082 DOI: 10.1534/G3.119.400165  0.42
2018 Broman KW, Gatti DM, Simecek P, Furlotte NA, Prins P, Sen Ś, Yandell BS, Churchill GA. R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multi-parent Populations. Genetics. PMID 30591514 DOI: 10.1534/Genetics.118.301595  0.38
2018 Shorter JR, Huang W, Beak JY, Hua K, Gatti DM, de Villena FP, Pomp D, Jensen BC. Correction to: Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 30515527 DOI: 10.1007/S00335-018-9789-9  0.355
2018 Yuan JT, Gatti DM, Philip VM, Kasparek S, Kreuzman AM, Mansky B, Sharif K, Taterra D, Taylor WM, Thomas M, Ward JO, Holmes A, Chesler EJ, Parker CC. Genome-wide association for testis weight in the diversity outbred mouse population. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 29691636 DOI: 10.1007/S00335-018-9745-8  0.502
2018 Keller MP, Gatti DM, Schueler KL, Rabaglia ME, Stapleton DS, Simecek P, Vincent M, Allen S, Broman AT, Bacher R, Kendziorski C, Broman KW, Yandell BS, Churchill GA, Attie AD. Genetic Drivers of Pancreatic Islet Function. Genetics. PMID 29567659 DOI: 10.1534/Genetics.118.300864  0.431
2018 Percival CJ, Green R, Roseman CC, Gatti DM, Morgan JL, Murray SA, Donahue LR, Mayeux JM, Pollard KM, Hua K, Pomp D, Marcucio R, Hallgrímsson B. Developmental constraint through negative pleiotropy in the zygomatic arch. Evodevo. 9: 3. PMID 29423138 DOI: 10.1186/S13227-018-0092-3  0.375
2017 Shorter JR, Huang W, Beak JY, Hua K, Gatti DM, de Villena FP, Pomp D, Jensen BC. Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 29279960 DOI: 10.1007/S00335-017-9730-7  0.355
2017 Keele GR, Prokop JW, He H, Holl K, Littrell J, Deal A, Francic S, Cui L, Gatti DM, Broman KW, Tschannen M, Tsaih SW, Zagloul M, Kim Y, Baur B, et al. Genetic Fine-Mapping and Identification of Candidate Genes and Variants for Adiposity Traits in Outbred Rats. Obesity (Silver Spring, Md.). PMID 29193816 DOI: 10.1002/Oby.22075  0.404
2017 Gatti DM, Weber SN, Goodwin NC, Lammert F, Churchill GA. Genetic background influences susceptibility to chemotherapy-induced hematotoxicity. The Pharmacogenomics Journal. 18: 319-330. PMID 28607509 DOI: 10.1038/Tpj.2017.23  0.396
2017 Tyler AL, Ji B, Gatti DM, Munger SC, Churchill GA, Svenson KL, Carter GW. Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice. Genetics. 206: 621-639. PMID 28592500 DOI: 10.1534/Genetics.116.198051  0.501
2017 Morgan AP, Gatti DM, Najarian ML, Keane TM, Galante RJ, Pack AI, Mott R, Churchill GA, de Villena FP. Structural Variation Shapes the Landscape of Recombination in Mouse. Genetics. 206: 603-619. PMID 28592499 DOI: 10.1534/Genetics.116.197988  0.461
2017 Gatti D, French JE, Schughart K. QTL Mapping and Identification of Candidate Genes in DO Mice: A Use Case Model Derived from a Benzene Toxicity Experiment. Methods in Molecular Biology (Clifton, N.J.). 1488: 265-281. PMID 27933529 DOI: 10.1007/978-1-4939-6427-7_12  0.503
2016 Winter JM, Gildea DE, Andreas JP, Gatti DM, Williams KA, Lee M, Hu Y, Zhang S, Mullikin JC, Wolfsberg TG, McDonnell SK, Fogarty ZC, Larson MC, French AJ, et al. Mapping Complex Traits in a Diversity Outbred F1 Mouse Population Identifies Germline Modifiers of Metastasis in Human Prostate Cancer. Cell Systems. PMID 27916600 DOI: 10.1016/J.Cels.2016.10.018  0.379
2016 Chesler EJ, Gatti DM, Morgan AP, Strobel M, Trepanier L, Oberbeck D, McWeeney S, Hitzemann R, Ferris M, McMullan R, Clayshultle A, Bell TA, Pardo-Manuel de Villena F, Churchill GA. Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection. G3 (Bethesda, Md.). PMID 27694113 DOI: 10.1534/G3.116.035527  0.452
2016 Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP. Defining the consequences of genetic variation on a proteome-wide scale. Nature. PMID 27309819 DOI: 10.1038/Nature18270  0.424
2016 Didion JP, Morgan AP, Yadgary L, Bell TA, McMullan RC, Ortiz de Solorzano L, Britton-Davidian J, Bult CJ, Campbell KJ, Castiglia R, Ching YH, Chunco AJ, Crowley JJ, Chesler EJ, Förster DW, ... ... Gatti DM, et al. R2d2 drives selfish sweeps in the house mouse. Molecular Biology and Evolution. PMID 26882987 DOI: 10.1093/Molbev/Msw036  0.453
2016 Gu T, Gatti DM, Srivastava A, Snyder EM, Raghupathy N, Simecek P, Svenson KL, Dotu I, Chuang JH, Keller MP, Attie AD, Braun RE, Churchill GA. Genetic Architectures of Quantitative Variation in RNA Editing Pathways. Genetics. 202: 787-98. PMID 26614740 DOI: 10.1534/Genetics.115.179481  0.343
2015 Dell'Acqua M, Gatti DM, Pea G, Cattonaro F, Coppens F, Magris G, Hlaing AL, Aung HH, Nelissen H, Baute J, Frascaroli E, Churchill GA, Inzé D, Morgante M, Pè ME. Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays. Genome Biology. 16: 167. PMID 26357913 DOI: 10.1186/S13059-015-0716-Z  0.472
2015 Didion JP, Morgan AP, Clayshulte AM, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, et al. A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2. Plos Genetics. 11: e1004850. PMID 25679959 DOI: 10.1371/Journal.Pgen.1004850  0.441
2015 Church RJ, Gatti DM, Urban TJ, Long N, Yang X, Shi Q, Eaddy JS, Mosedale M, Ballard S, Churchill GA, Navarro V, Watkins PB, Threadgill DW, Harrill AH. Sensitivity to hepatotoxicity due to epigallocatechin gallate is affected by genetic background in diversity outbred mice. Food and Chemical Toxicology : An International Journal Published For the British Industrial Biological Research Association. 76: 19-26. PMID 25446466 DOI: 10.1016/J.Fct.2014.11.008  0.385
2015 French JE, Gatti DM, Morgan DL, Kissling GE, Shockley KR, Knudsen GA, Shepard KG, Price HC, King D, Witt KL, Pedersen LC, Munger SC, Svenson KL, Churchill GA. Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity. Environmental Health Perspectives. 123: 237-45. PMID 25376053 DOI: 10.1289/Ehp.1408202  0.338
2015 Yuan R, Gatti DM, Krier R, Malay E, Schultz D, Peters LL, Churchill GA, Harrison DE, Paigen B. Genetic Regulation of Female Sexual Maturation and Longevity Through Circulating IGF1. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 70: 817-26. PMID 25070661 DOI: 10.1093/Gerona/Glu114  0.368
2015 Didion JP, Morgan AP, Clayshulte AM-, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, et al. R2d maps to a 9.3 Mb candidate interval. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004850.G001  0.309
2014 Smallwood TL, Gatti DM, Quizon P, Weinstock GM, Jung KC, Zhao L, Hua K, Pomp D, Bennett BJ. High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis. G3 (Bethesda, Md.). 4: 2353-63. PMID 25344410 DOI: 10.1534/G3.114.014704  0.472
2014 Gatti DM, Svenson KL, Shabalin A, Wu LY, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman KW, Churchill GA. Quantitative trait locus mapping methods for diversity outbred mice. G3 (Bethesda, Md.). 4: 1623-33. PMID 25237114 DOI: 10.1534/G3.114.013748  0.499
2014 Ram R, Mehta M, Balmer L, Gatti DM, Morahan G. Rapid identification of major-effect genes using the collaborative cross. Genetics. 198: 75-86. PMID 25236450 DOI: 10.1534/Genetics.114.163014  0.457
2014 Munger SC, Raghupathy N, Choi K, Simons AK, Gatti DM, Hinerfeld DA, Svenson KL, Keller MP, Attie AD, Hibbs MA, Graber JH, Chesler EJ, Churchill GA. RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations. Genetics. 198: 59-73. PMID 25236449 DOI: 10.1534/Genetics.114.165886  0.365
2014 Recla JM, Robledo RF, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 25: 211-22. PMID 24700285 DOI: 10.1007/S00335-014-9508-0  0.468
2013 Logan RW, Robledo RF, Recla JM, Philip VM, Bubier JA, Jay JJ, Harwood C, Wilcox T, Gatti DM, Bult CJ, Churchill GA, Chesler EJ. High-precision genetic mapping of behavioral traits in the diversity outbred mouse population. Genes, Brain, and Behavior. 12: 424-37. PMID 23433259 DOI: 10.1111/Gbb.12029  0.387
2012 Churchill GA, Gatti DM, Munger SC, Svenson KL. The Diversity Outbred mouse population Mammalian Genome. 23: 713-718. PMID 22892839 DOI: 10.1007/S00335-012-9414-2  0.503
2012 Svenson KL, Gatti DM, Valdar W, Welsh CE, Cheng R, Chesler EJ, Palmer AA, McMillan L, Churchill GA. High-resolution genetic mapping using the Mouse Diversity outbred population. Genetics. 190: 437-47. PMID 22345611 DOI: 10.1534/Genetics.111.132597  0.5
2012 Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, ... ... Gatti DM, et al. The genome architecture of the collaborative cross mouse genetic reference population Genetics. 190: 389-401. PMID 22345608 DOI: 10.1534/Genetics.111.132639  0.633
2011 Gatti DM, Lu L, Williams RW, Sun W, Wright FA, Threadgill DW, Rusyn I. MicroRNA expression in the livers of inbred mice. Mutation Research. 714: 126-33. PMID 21616085 DOI: 10.1016/J.Mrfmmm.2011.05.007  0.532
2010 Gatti DM, Barry WT, Nobel AB, Rusyn I, Wright FA. Heading down the wrong pathway: on the influence of correlation within gene sets. Bmc Genomics. 11: 574. PMID 20955544 DOI: 10.1186/1471-2164-11-574  0.524
2010 Rusyn I, Gatti DM, Wiltshire T, Wilshire T, Kleeberger SR, Threadgill DW. Toxicogenetics: population-based testing of drug and chemical safety in mouse models. Pharmacogenomics. 11: 1127-36. PMID 20704464 DOI: 10.2217/Pgs.10.100  0.564
2010 Gatti DM, Zhao N, Chesler EJ, Bradford BU, Shabalin AA, Yordanova R, Lu L, Rusyn I. Sex-specific gene expression in the BXD mouse liver. Physiological Genomics. 42: 456-68. PMID 20551147 DOI: 10.1152/Physiolgenomics.00110.2009  0.623
2010 Rusyn I, Gatti DM, Wiltshire T, Kleeberger SR, Threadgill DW. Erratum: Toxicogenetics: Population-based testing of drug and chemical safety in mouse models (Pharmacogenomics (2010) 11:8 (1127-1136)) Pharmacogenomics. 11. DOI: 10.2217/Pgs.10.148  0.478
2009 Gatti DM, Harrill AH, Wright FA, Threadgill DW, Rusyn I. Replication and narrowing of gene expression quantitative trait loci using inbred mice. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 20: 437-46. PMID 19609828 DOI: 10.1007/S00335-009-9199-0  0.624
2009 Harrill AH, Ross PK, Gatti DM, Threadgill DW, Rusyn I. Population-based discovery of toxicogenomics biomarkers for hepatotoxicity using a laboratory strain diversity panel. Toxicological Sciences : An Official Journal of the Society of Toxicology. 110: 235-43. PMID 19420014 DOI: 10.1093/Toxsci/Kfp096  0.607
2009 Ross PK, Woods CG, Bradford BU, Kosyk O, Gatti DM, Cunningham ML, Rusyn I. Time-course comparison of xenobiotic activators of CAR and PPARalpha in mouse liver. Toxicology and Applied Pharmacology. 235: 199-207. PMID 19136022 DOI: 10.1016/J.Taap.2008.12.011  0.645
2009 Gatti DM, Sypa M, Rusyn I, Wright FA, Barry WT. SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy. Bioinformatics (Oxford, England). 25: 541-2. PMID 19098030 DOI: 10.1093/Bioinformatics/Btn655  0.538
2009 Gatti DM, Shabalin AA, Lam TC, Wright FA, Rusyn I, Nobel AB. FastMap: fast eQTL mapping in homozygous populations. Bioinformatics (Oxford, England). 25: 482-9. PMID 19091771 DOI: 10.1093/Bioinformatics/Btn648  0.574
2007 Gatti D, Maki A, Chesler EJ, Kirova R, Kosyk O, Lu L, Manly KF, Williams RW, Perkins A, Langston MA, Threadgill DW, Rusyn I. Genome-level analysis of genetic regulation of liver gene expression networks. Hepatology (Baltimore, Md.). 46: 548-57. PMID 17542012 DOI: 10.1002/Hep.21682  0.644
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