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Brain B. Avants - Publications

Affiliations: 
University of Pennsylvania, Philadelphia, PA, United States 
Area:
Diffeomorphic image registration
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Stone JR, Avants BB, Tustison N, Wassermann E, Gill J, Polejaeva E, Dell KC, Carr W, Yarnell AM, LoPresti ML, Walker PB, O'Brien M, Domeisen N, Quick A, Modica CM, et al. Functional and structural neuroimaging correlates of repetitive low-level blast exposure in career breachers. Journal of Neurotrauma. PMID 32928028 DOI: 10.1089/Neu.2020.7141  0.315
2019 Tustison NJ, Holbrook AJ, Avants BB, Roberts JM, Cook PA, Reagh ZM, Duda JT, Stone JR, Gillen DL, Yassa MA. Longitudinal Mapping of Cortical Thickness Measurements: An Alzheimer's Disease Neuroimaging Initiative-Based Evaluation Study. Journal of Alzheimer's Disease : Jad. PMID 31356207 DOI: 10.3233/Jad-190283  0.303
2018 Anderson RJ, Cook JJ, Delpratt N, Nouls JC, Gu B, McNamara JO, Avants BB, Johnson GA, Badea A. Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics. PMID 30565026 DOI: 10.1007/S12021-018-9410-0  0.334
2017 Pustina D, Avants B, Faseyitan O, Medaglia J, Branch Coslett H. Improved accuracy of lesion to symptom mapping with multivariate sparse canonical correlations. Neuropsychologia. PMID 28882479 DOI: 10.1016/j.neuropsychologia.2017.08.027  0.346
2017 Maga AM, Tustison NJ, Avants BB. A population level atlas of Mus musculus craniofacial skeleton and automated image-based shape analysis. Journal of Anatomy. 231: 433-443. PMID 28656622 DOI: 10.1111/joa.12645  0.301
2015 Avants BB, Duda JT, Kilroy E, Krasileva K, Jann K, Kandel BT, Tustison NJ, Yan L, Jog M, Smith R, Wang Y, Dapretto M, Wang DJ. The pediatric template of brain perfusion. Scientific Data. 2: 150003. PMID 25977810 DOI: 10.1038/Sdata.2015.3  0.376
2015 Išgum I, Benders MJ, Avants B, Cardoso MJ, Counsell SJ, Gomez EF, Gui L, H?ppi PS, Kersbergen KJ, Makropoulos A, Melbourne A, Moeskops P, Mol CP, Kuklisova-Murgasova M, Rueckert D, et al. Evaluation of automatic neonatal brain segmentation algorithms: the NeoBrainS12 challenge. Medical Image Analysis. 20: 135-51. PMID 25487610 DOI: 10.1016/J.Media.2014.11.001  0.304
2015 Kandel BM, Wang DJ, Detre JA, Gee JC, Avants BB. Decomposing cerebral blood flow MRI into functional and structural components: a non-local approach based on prediction. Neuroimage. 105: 156-70. PMID 25449745 DOI: 10.1016/j.neuroimage.2014.10.052  0.349
2015 Kandel BM, Wang DJ, Gee JC, Avants BB. Eigenanatomy: sparse dimensionality reduction for multi-modal medical image analysis. Methods (San Diego, Calif.). 73: 43-53. PMID 25448483 DOI: 10.1016/j.ymeth.2014.10.016  0.338
2014 Tustison NJ, Cook PA, Klein A, Song G, Das SR, Duda JT, Kandel BM, van Strien N, Stone JR, Gee JC, Avants BB. Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements. Neuroimage. 99: 166-79. PMID 24879923 DOI: 10.1016/J.Neuroimage.2014.05.044  0.564
2014 Avants BB, Tustison NJ, Stauffer M, Song G, Wu B, Gee JC. The Insight ToolKit image registration framework. Frontiers in Neuroinformatics. 8: 44. PMID 24817849 DOI: 10.3389/Fninf.2014.00044  0.32
2014 Tustison NJ, Avants BB, Cook PA, Kim J, Whyte J, Gee JC, Stone JR. Logical circularity in voxel-based analysis: normalization strategy may induce statistical bias. Human Brain Mapping. 35: 745-59. PMID 23151955 DOI: 10.1002/Hbm.22211  0.568
2013 Kandel BM, Wolk DA, Gee JC, Avants B. Predicting cognitive data from medical images using sparse linear regression. Information Processing in Medical Imaging : Proceedings of the ... Conference. 23: 86-97. PMID 24683960 DOI: 10.1007/978-3-642-38868-2_8  0.321
2013 Duda JT, Detre JA, Kim J, Gee JC, Avants BB. Fusing functional signals by sparse canonical correlation analysis improves network reproducibility. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 635-42. PMID 24505815 DOI: 10.1007/978-3-642-40760-4_79  0.547
2013 Tustison NJ, Johnson HJ, Rohlfing T, Klein A, Ghosh SS, Ibanez L, Avants BB. Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. Frontiers in Neuroscience. 7: 162. PMID 24058331 DOI: 10.3389/Fnins.2013.00162  0.469
2013 Kim J, Avants B, Whyte J, Gee JC. Methodological considerations in longitudinal morphometry of traumatic brain injury. Frontiers in Human Neuroscience. 7: 52. PMID 23549059 DOI: 10.3389/Fnhum.2013.00052  0.578
2012 Datta R, Lee J, Duda J, Avants BB, Vite CH, Tseng B, Gee JC, Aguirre GD, Aguirre GK. A digital atlas of the dog brain. Plos One. 7: e52140. PMID 23284904 DOI: 10.1371/journal.pone.0052140  0.395
2012 Badea A, Gewalt S, Avants BB, Cook JJ, Johnson GA. Quantitative mouse brain phenotyping based on single and multispectral MR protocols. Neuroimage. 63: 1633-45. PMID 22836174 DOI: 10.1016/J.Neuroimage.2012.07.021  0.386
2012 Ghosh SS, Klein A, Avants B, Millman KJ. Learning from open source software projects to improve scientific review. Frontiers in Computational Neuroscience. 6: 18. PMID 22529798 DOI: 10.3389/Fncom.2012.00018  0.433
2011 Kim SG, Chung MK, Hanson JL, Avants BB, Gee JC, Davidson RJ, Pollak SD. STRUCTURAL CONNECTIVITY VIA THE TENSOR-BASED MORPHOMETRY. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. PMID 24177222 DOI: 10.1109/ISBI.2011.5872528  0.334
2011 Avants BB, Tustison NJ, Song G, Cook PA, Klein A, Gee JC. A reproducible evaluation of ANTs similarity metric performance in brain image registration. Neuroimage. 54: 2033-44. PMID 20851191 DOI: 10.1016/J.Neuroimage.2010.09.025  0.61
2010 Avants B, Cook PA, McMillan C, Grossman M, Tustison NJ, Zheng Y, Gee JC. Sparse unbiased analysis of anatomical variance in longitudinal imaging. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 13: 324-31. PMID 20879247  0.326
2010 Kim J, Whyte J, Patel S, Avants B, Europa E, Wang J, Slattery J, Gee JC, Coslett HB, Detre JA. Resting cerebral blood flow alterations in chronic traumatic brain injury: an arterial spin labeling perfusion FMRI study. Journal of Neurotrauma. 27: 1399-411. PMID 20528163 DOI: 10.1089/Neu.2009.1215  0.604
2010 Klein A, Ghosh SS, Avants B, Yeo BT, Fischl B, Ardekani B, Gee JC, Mann JJ, Parsey RV. Evaluation of volume-based and surface-based brain image registration methods. Neuroimage. 51: 214-20. PMID 20123029 DOI: 10.1016/J.Neuroimage.2010.01.091  0.588
2010 Avants BB, Cook PA, Ungar L, Gee JC, Grossman M. Dementia induces correlated reductions in white matter integrity and cortical thickness: a multivariate neuroimaging study with sparse canonical correlation analysis. Neuroimage. 50: 1004-16. PMID 20083207 DOI: 10.1016/J.Neuroimage.2010.01.041  0.308
2010 Yushkevich PA, Avants BB, Das SR, Pluta J, Altinay M, Craige C. Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: an illustration in ADNI 3 T MRI data. Neuroimage. 50: 434-45. PMID 20005963 DOI: 10.1016/J.Neuroimage.2009.12.007  0.313
2009 Klein A, Andersson J, Ardekani BA, Ashburner J, Avants B, Chiang MC, Christensen GE, Collins DL, Gee J, Hellier P, Song JH, Jenkinson M, Lepage C, Rueckert D, Thompson P, et al. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. Neuroimage. 46: 786-802. PMID 19195496 DOI: 10.1016/J.Neuroimage.2008.12.037  0.595
2009 Das SR, Avants BB, Grossman M, Gee JC. Registration based cortical thickness measurement. Neuroimage. 45: 867-79. PMID 19150502 DOI: 10.1016/j.neuroimage.2008.12.016  0.374
2008 Avants B, Duda JT, Kim J, Zhang H, Pluta J, Gee JC, Whyte J. Multivariate analysis of structural and diffusion imaging in traumatic brain injury. Academic Radiology. 15: 1360-75. PMID 18995188 DOI: 10.1016/J.Acra.2008.07.007  0.612
2008 Yushkevich PA, Avants BB, Pluta J, Minkoff D, Detre JA, Grossman M, Gee JC. Shape-based alignment of hippocampal subfields: evaluation in postmortem MRI. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11: 510-7. PMID 18979785 DOI: 10.1007/978-3-540-85988-8_61  0.305
2008 Kim J, Avants B, Patel S, Whyte J, Coslett BH, Pluta J, Detre JA, Gee JC. Structural consequences of diffuse traumatic brain injury: a large deformation tensor-based morphometry study. Neuroimage. 39: 1014-26. PMID 17999940 DOI: 10.1016/J.Neuroimage.2007.10.005  0.625
2008 Avants BB, Epstein CL, Grossman M, Gee JC. Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Analysis. 12: 26-41. PMID 17659998 DOI: 10.1016/j.media.2007.06.004  0.392
2007 Avants BB, Duda JT, Zhang H, Gee JC. Multivariate normalization with symmetric diffeomorphisms for multivariate studies. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 359-66. PMID 18051079  0.343
2007 Avants B, Anderson C, Grossman M, Gee JC. Spatiotemporal normalization for longitudinal analysis of gray matter atrophy in frontotemporal dementia. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 303-10. PMID 18044582 DOI: 10.1007/978-3-540-75759-7_37  0.318
2007 Fan Y, Rao H, Hurt H, Giannetta J, Korczykowski M, Shera D, Avants BB, Gee JC, Wang J, Shen D. Multivariate examination of brain abnormality using both structural and functional MRI. Neuroimage. 36: 1189-99. PMID 17512218 DOI: 10.1016/J.Neuroimage.2007.04.009  0.372
2006 Song Z, Tustison N, Avants B, Gee JC. Integrated graph cuts for brain MRI segmentation. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9: 831-8. PMID 17354850  0.305
2005 Cook PA, Zhang H, Avants BB, Yushkevich P, Alexander DC, Gee JC, Ciccarelli O, Thompson AJ. An automated approach to connectivity-based partitioning of brain structures. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 164-71. PMID 16685842 DOI: 10.1007/11566465_21  0.398
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