Prosanta Chakrabarty, Ph.D. - Publications

2006 University of Michigan, Ann Arbor, Ann Arbor, MI 
 2008 Ichthyology American Museum of Natural History, New York, NY, United States 
 2008- Museum of Natural Science Louisiana State University, Baton Rouge, LA, United States 
 2016-2017 Systematics National Science Foundation, Arlington, VA, United States 
Zoology Biology, Genetics

67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Alda F, Ludt WB, Elías DJ, McMahan CD, Chakrabarty P. Comparing ultraconserved elements and exons for phylogenomic analyses of Middle American cichlids: when data agree to disagree. Genome Biology and Evolution. PMID 34272856 DOI: 10.1093/gbe/evab161  0.96
2021 Buckner JC, Sanders RC, Faircloth BC, Chakrabarty P. Science Forum: The critical importance of vouchers in genomics. Elife. 10. PMID 34061026 DOI: 10.7554/eLife.68264  0.6
2021 McMahan CD, Elías DJ, Li Y, Domínguez-Domínguez O, Rodriguez-Machado S, Morales-Cabrera A, Velásquez-Ramírez D, Piller KR, Chakrabarty P, Matamoros WA. Molecular systematics of the Awaous banana complex (River Gobies; Teleostei: Oxudercidae). Journal of Fish Biology. PMID 33991111 DOI: 10.1111/jfb.14783  0.96
2020 McMahan CD, Fuentes-Montejo CE, Ginger L, Carrasco JC, Chakrabarty P, Matamoros WA. Climate change models predict decreases in the range of a microendemic freshwater fish in Honduras. Scientific Reports. 10: 12693. PMID 32728139 DOI: 10.1038/S41598-020-69579-7  0.96
2020 Hart PB, Niemiller ML, Burress ED, Armbruster JW, Ludt WB, Chakrabarty P. Cave-adapted evolution in the North American amblyopsid fishes inferred using phylogenomics and geometric morphometrics. Evolution; International Journal of Organic Evolution. PMID 32187649 DOI: 10.1111/Evo.13958  0.92
2020 Craig JM, Carvalho TP, Chakrabarty P, Derouen V, Ortega H, Petry P, Reis RE, Tagliacollo VA, Albert JS. Using community phylogenetics to assess phylogenetic structure in the Fitzcarrald region of Western Amazonia Neotropical Ichthyology. 18. DOI: 10.1590/1982-0224-2020-0004  1
2020 Elías DJ, McMahan CD, Matamoros WA, Gómez‐González AE, Piller KR, Chakrabarty P. Scale(s) matter: Deconstructing an area of endemism for Middle American freshwater fishes Journal of Biogeography. DOI: 10.1111/Jbi.13941  0.96
2019 Ludt WB, Rocha LA, Chakrabarty P. The first complete mitochondrial genomes of sawtail surgeonfishes (Acanthuridae: ). Mitochondrial Dna. Part B, Resources. 5: 212-213. PMID 33366491 DOI: 10.1080/23802359.2019.1699465  0.92
2019 Ludt WB, Burridge CP, Chakrabarty P. A taxonomic revision of Cheilodactylidae and Latridae (Centrarchiformes: Cirrhitoidei) using morphological and genomic characters. Zootaxa. 4585: zootaxa.4585.1.7. PMID 31716185 DOI: 10.11646/Zootaxa.4585.1.7  0.92
2019 Ludt WB, Bernal MA, Kenworthy E, Salas E, Chakrabarty P. Genomic, ecological, and morphological approaches to investigating species limits: A case study in modern taxonomy from Tropical Eastern Pacific surgeonfishes. Ecology and Evolution. 9: 4001-4012. PMID 31015983 DOI: 10.1002/Ece3.5029  0.92
2018 Alda F, Tagliacollo VA, Bernt MJ, Waltz BT, Ludt WB, Faircloth BC, Alfaro ME, Albert JS, Chakrabarty P. Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting. Systematic Biology. PMID 30521024 DOI: 10.1093/Sysbio/Syy085  0.92
2018 Kuang T, Tornabene L, Li J, Jiang J, Chakrabarty P, Sparks JS, Naylor GJP, Li C. Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness. Molecular Phylogenetics and Evolution. PMID 30036699 DOI: 10.1016/J.Ympev.2018.07.018  1
2017 Alda F, Adams AJ, McMillan WO, Chakrabarty P. Complete mitochondrial genomes of three Neotropical sleeper gobies: , and (Gobiiformes: Eleotridae). Mitochondrial Dna. Part B, Resources. 2: 747-750. PMID 33490475 DOI: 10.1080/23802359.2017.1390412  0.92
2017 Alda F, Adams AJ, Chakrabarty P, McMillan WO. Mitogenomic divergence between three pairs of putative geminate fishes from Panama. Mitochondrial Dna. Part B, Resources. 3: 1-5. PMID 33474047 DOI: 10.1080/23802359.2017.1413288  0.92
2017 Burress ED, Alda F, Duarte A, Loureiro M, Armbruster JW, Chakrabarty P. Phylogenomics of pike cichlids (Cichlidae: Crenicichla): the rapid evolution and trophic diversification of an incipient species flock. Journal of Evolutionary Biology. PMID 29044782 DOI: 10.1111/Jeb.13196  0.92
2017 McMahan CD, Ginger L, Cage M, David KT, Chakrabarty P, Johnston M, Matamoros WA. Pleistocene to holocene expansion of the black-belt cichlid in Central America, Vieja maculicauda (Teleostei: Cichlidae). Plos One. 12: e0178439. PMID 28558052 DOI: 10.1371/Journal.Pone.0178439  0.96
2017 Chakrabarty P, Faircloth BC, Alda F, Ludt WB, McMahan CD, Near TJ, Dornburg A, Albert JS, Arroyave J, Stiassny ML, Sorenson L, Alfaro ME. Phylogenomic Systematics of Ostariophysan fishes: Ultraconserved Elements Support the Surprising Non-monophyly of Characiformes. Systematic Biology. PMID 28334176 DOI: 10.1093/Sysbio/Syx038  0.96
2017 Evans KM, Waltz B, Tagliacollo V, Chakrabarty P, Albert JS. Why the short face? Developmental disintegration of the neurocranium drives convergent evolution in neotropical electric fishes. Ecology and Evolution. 7: 1783-1801. PMID 28331588 DOI: 10.1002/Ece3.2704  0.64
2016 Walsh SJ, Chakrabarty P. A New Genus and Species of Blind Sleeper (Teleostei: Eleotridae) from Oaxaca, Mexico: First Obligate Cave Gobiiform in the Western Hemisphere Copeia. 104: 506-517. DOI: 10.1643/Ci-15-275  1
2016 Bagley JC, Matamoros WA, Mcmahan CD, Tobler M, Chakrabarty P, Johnson JB. Phylogeography and species delimitation in convict cichlids (Cichlidae: Amatitlania): Implications for taxonomy and Plio-Pleistocene evolutionary history in Central America Biological Journal of the Linnean Society. DOI: 10.1111/Bij.12845  1
2015 Mcmahan CD, Matamoros WA, Piller KR, Chakrabarty P. Taxonomy and systematics of the herichthyins (Cichlidae: Tribe Heroini), with the description of eight new Middle American Genera. Zootaxa. 3999: 211-34. PMID 26623572 DOI: 10.11646/Zootaxa.3999.2.3  1
2015 Bacon CD, Silvestro D, Jaramillo C, Smith BT, Chakrabarty P, Antonelli A. Reply to Lessios and Marko et al.: Early and progressive migration across the Isthmus of Panama is robust to missing data and biases. Proceedings of the National Academy of Sciences of the United States of America. 112: E5767-8. PMID 26489656 DOI: 10.1073/Pnas.1515451112  1
2015 Tagliacollo VA, Duke-Sylvester SM, Matamoros WA, Chakrabarty P, Albert JS. Coordinated Dispersal and Pre-Isthmian Assembly of the Central American Ichthyofauna. Systematic Biology. PMID 26370565 DOI: 10.1093/Sysbio/Syv064  0.76
2015 Chakrabarty P, Sparks JS. Formalizing the names of subfamilies and tribes of ponyfishes (Leiognathidae Gill 1893). Zootaxa. 3964: 298-9. PMID 26249439 DOI: 10.11646/Zootaxa.3964.2.10  1
2015 Sparks JS, Chakrabarty P. Description of a new genus of ponyfishes (Teleostei: Leiognathidae), with a review of the current generic-level composition of the family. Zootaxa. 3947: 181-90. PMID 25947728 DOI: 10.11646/Zootaxa.3947.2.2  1
2015 Bacon CD, Silvestro D, Jaramillo C, Smith BT, Chakrabarty P, Antonelli A. Biological evidence supports an early and complex emergence of the Isthmus of Panama. Proceedings of the National Academy of Sciences of the United States of America. 112: 6110-5. PMID 25918375 DOI: 10.1073/Pnas.1423853112  1
2015 Ludt WB, Rocha LA, Erdmann MV, Chakrabarty P. Skipping across the tropics: the evolutionary history of sawtail surgeonfishes (Acanthuridae: Prionurus). Molecular Phylogenetics and Evolution. 84: 166-72. PMID 25596541 DOI: 10.1016/J.Ympev.2014.12.017  1
2015 Derouen V, Ludt WB, Ho HC, Chakrabarty P. Examining evolutionary relationships and shifts in depth preferences in batfishes (Lophiiformes: Ogcocephalidae). Molecular Phylogenetics and Evolution. 84: 27-33. PMID 25554525 DOI: 10.1016/J.Ympev.2014.12.011  1
2015 Matamoros WA, Mcmahan CD, Chakrabarty P, Albert JS, Schaefer JF. Derivation of the freshwater fish fauna of Central America revisited: Myers's hypothesis in the twenty-first century Cladistics. 31: 177-188. DOI: 10.1111/Cla.12081  1
2015 Bacon CD, Silvestro D, Jaramillo C, Smith BT, Chakrabarty P, Antonelli A. Correction: Biological evidence supports an early and complex emergence of the Isthmus of Panama (Proceedings of National Academy of Sciences United States of America (2015), 112 (6110-6115) DOI: 10.1073/pnas.1423853112) Proceedings of the National Academy of Sciences of the United States of America. 112: E3153. DOI: 10.1073/pnas.1509107112  1
2015 Ng HH, Tan HH, Lim KKP, Ludt WB, Chakrabarty P. Fishes of the Eastern Johor Strait Raffles Bulletin of Zoology. 2015: 303-337.  1
2014 Chakrabarty P, Prejean JA, Niemiller ML. The Hoosier cavefish, a new and endangered species (Amblyopsidae, Amblyopsis) from the caves of southern Indiana. Zookeys. 41-57. PMID 24899861 DOI: 10.3897/Zookeys.412.7245  1
2014 McMahan CD, Matamoros WA, Barraza E, Kutz J, Chakrabarty P. Taxonomic status of the lago coatepeque endemic convict cichlid amatitlania coatepeque (Teleostei: Cichlidae) Copeia. 2014: 633-638. DOI: 10.1643/Ci-13-153  1
2014 Oldfield RG, Mandrekar K, Nieves MX, Hendrickson DA, Chakrabarty P, Swanson BO, Hofmann HA. Parental care in the Cuatro Ciénegas cichlid, Herichthys minckleyi (Teleostei: Cichlidae) Hydrobiologia. 748: 233-257. DOI: 10.1007/S10750-014-2081-4  1
2013 McMahan CD, Matamoros WA, Álvarez Calderón FS, Henríquez WY, Recinos HM, Chakrabarty P, Barraza E, Herrera N. Checklist of the inland fishes of El Salvador. Zootaxa. 3608: 440-56. PMID 24614482 DOI: 10.11646/Zootaxa.3608.6.2  1
2013 Chakrabarty P, Warren M, Page LM, Baldwin CC. GenSeq: An updated nomenclature and ranking for genetic sequences from type and non-type sources. Zookeys. 29-41. PMID 24223486 DOI: 10.3897/Zookeys.346.5753  1
2013 McMahan CD, Chakrabarty P, Sparks JS, Smith WM, Davis MP. Temporal patterns of diversification across global cichlid biodiversity (Acanthomorpha: Cichlidae). Plos One. 8: e71162. PMID 23990936 DOI: 10.1371/Journal.Pone.0071162  1
2013 Matamoros WA, Chakrabarty P, Angulo A, Garita-Alvarado CA, McMahan CD. A new species of Roeboides (Teleostei: Characidae) from Costa Rica and Panama, with a key to the middle American species of the genus Neotropical Ichthyology. 11: 285-290. DOI: 10.1590/S1679-62252013000200006  1
2012 Matamoros WA, Schaefer JF, Hernández CL, Prosanta Chakrabarty. Profundulus kreiseri, a new species of Profundulidae (Teleostei, Cyprinodontiformes) from northwestern Honduras. Zookeys. 49-62. PMID 23166464 DOI: 10.3897/Zookeys.227.3151  1
2012 Chakrabarty P, Davis MP, Sparks JS. The first record of a trans-oceanic sister-group relationship between obligate vertebrate troglobites. Plos One. 7: e44083. PMID 22937155 DOI: 10.1371/Journal.Pone.0044083  1
2012 Chakrabarty P, Derouen V. Fishes: The Animal Answer GuideDo Fish Sleep? Fascinating Answers to Questions About Fishes Copeia. 2012: 361-361. DOI: 10.1643/Ot-12-003.1  1
2012 Sparks JS, Chakrabarty P. Revision of the endemic malagasy cavefish genus typhleotris (teleostei: Gobiiformes: milyeringidae), with discussion of its phylogenetic placement and description of a new species American Museum Novitates. 1-28. DOI: 10.1206/3764.2  1
2012 Chakrabarty P, Lam C, Hardman J, Aaronson J, House PH, Janies DA. SpeciesMap: A web-based application for visualizing the overlap of distributions and pollution events, with a list of fishes put at risk by the 2010 Gulf of Mexico oil spill Biodiversity and Conservation. 21: 1865-1876. DOI: 10.1007/S10531-012-0284-4  1
2011 Chakrabarty P, Davis MP, Smith WL, Baldwin ZH, Sparks JS. Is sexual selection driving diversification of the bioluminescent ponyfishes (Teleostei: Leiognathidae)? Molecular Ecology. 20: 2818-34. PMID 21623980 DOI: 10.1111/J.1365-294X.2011.05112.X  1
2011 Harrison IJ, Chakrabarty P, Freyhof J, Craig JF. Correct nomenclature and recommendations for preserving and cataloguing voucher material and genetic sequences Journal of Fish Biology. 78: 1283-1290. PMID 21539541 DOI: 10.1111/j.1095-8649.2011.02979.x  1
2011 Chakrabarty P, Davis MP, Smith WL, Berquist R, Gledhill KM, Frank LR, Sparks JS. Evolution of the light organ system in ponyfishes (Teleostei: Leiognathidae). Journal of Morphology. 272: 704-21. PMID 21433053 DOI: 10.1002/Jmor.10941  1
2011 Wiley EO, Chakrabarty P, Craig MT, Davis MP, Holcroft NI, Mayden RL, Smith WML. A response to Mooi, Williams and Gill Zootaxa. 33-37. DOI: 10.11646/Zootaxa.2946.1.7  1
2011 Wiley EO, Chakrabarty P, Craig MT, Davis MP, Holcroft NI, Mayden RL, Smith WML. Will the real phylogeneticists please stand up? Zootaxa. 7-16. DOI: 10.11646/Zootaxa.2946.1.4  1
2011 Schaefer SA, Chakrabarty P, Geneva AJ, Sabaj Pérez MH. Nucleotide sequence data confirm diagnosis and local endemism of variable morphospecies of Andean astroblepid catfishes (Siluriformes: Astroblepidae) Zoological Journal of the Linnean Society. 162: 90-102. DOI: 10.1111/J.1096-3642.2010.00673.X  1
2011 Chakrabarty P, Albert JS. Not so fast: A new take on the Great American biotic interchange Historical Biogeography of Neotropical Freshwater Fishes. 293-306.  1
2010 Ho HC, Chakrabarty P, Sparks JS. Review of the Halieutichthys aculeatus species complex (Lophiiformes: Ogcocephalidae), with descriptions of two new species Journal of Fish Biology. 77: 841-869. PMID 20840615 DOI: 10.1111/j.1095-8649.2010.02716.x  1
2010 Chakrabarty P. The transitioning state of systematic ichthyology Copeia. 513-515. DOI: 10.1643/Ot-10-087A  1
2010 Chakrabarty P. Genetypes: A concept to help integrate molecular phylogenetics and taxonomy Zootaxa. 67-68. DOI: 10.11646/Zootaxa.2632.1.4  1
2010 Chakrabarty P. Status and phylogeny of Milyeringidae (Teleostei: Gobiiformes), with the description of a new blind cave-fish from Australia, Milyeringa brooksi, n. sp Zootaxa. 19-28. DOI: 10.11646/Zootaxa.2557.1.2  1
2010 Chakrabarty P, Chu J, Nahar L, Sparks JS. Geometric morphometrics uncovers a new species of ponyfish (Teleostei: Leiognathidae: Equulites), with comments on the taxonomic status of Equula berbis Valenciennes Zootaxa. 15-24. DOI: 10.11646/Zootaxa.2427.1.2  1
2010 Chakrabarty P, Sparks JS, Ho HC. Taxonomic review of the ponyfishes (Perciformes: Leiognathidae) of Taiwan Marine Biodiversity. 40: 107-121. DOI: 10.1007/S12526-010-0037-0  1
2008 Chakrabarty P, Sparks JS. Diagnoses for Leiognathus Lacepède 1802, Equula Cuvier 1815, Equulites Fowler 1904, Eubleekeria Fowler 1904, and a New Ponyfish Genus (Teleostei: Leiognathidae) American Museum Novitates. 1-11. DOI: 10.1206/618.1  1
2008 Leo Smith W, Chakrabarty P, Sparks JS. Phylogeny, taxonomy, and evolution of Neotropical cichlids (Teleostei: Cichlidae: Cichlinae) Cladistics. 24: 625-641. DOI: 10.1111/J.1096-0031.2008.00210.X  1
2007 Sparks JS, Chakrabarty P. A new species of ponyfish (Teleostei: Leiognathidae: Photoplagios) from the Philippines Copeia. 622-629. DOI: 10.1643/0045-8511(2007)2007[622:Ansopt]2.0.Co;2  1
2007 Chakrabarty P, Sparks JS. Phylogeny and taxonomic revision of Nuchequula Whitley 1932 (Teleostei: Leiognathidae), with the description of a new species American Museum Novitates. 1-25. DOI: 10.1206/0003-0082(2007)3588[1:Patron]2.0.Co;2  1
2007 Chakrabarty P, Sparks JS. Relationships of the New World cichlid genus Hypsophrys Agassiz 1859 (Teleostei: Cichlidae), with diagnoses for the genus and its species Zootaxa. 59-64. DOI: 10.11646/Zootaxa.1523.1.3  1
2006 Chakrabarty P. Systematics and historical biogeography of Greater Antillean Cichlidae. Molecular Phylogenetics and Evolution. 39: 619-27. PMID 16495088 DOI: 10.1016/J.Ympev.2006.01.014  1
2006 Chakrabarty P, Oldfield RG, Ng HH. Nandus prolixus, a new species of leaf fish from northeastern Borneo (Teleostei: Perciformes: Nandidae) Zootaxa. 51-61. DOI: 10.11646/Zootaxa.1328.1.4  1
2005 Chakrabarty P. Testing conjectures about morphological diversity in cichlids of Lakes Malawi and Tanganyika Copeia. 359-373. DOI: 10.1643/Cg-04-089R2  1
2005 Chakrabarty P, Ng HH. The identity of catfishes identified as Mystus cavasius (Hamilton, 1822) (Teleostei: Bagridae), with a description of a new species from Myanmar Zootaxa. 1-24. DOI: 10.11646/Zootaxa.1093.1.1  1
2005 Pikitch EK, Doukakis P, Lauck L, Chakrabarty P, Erickson DL. Status, trends and management of sturgeon and paddlefish fisheries Fish and Fisheries. 6: 233-265. DOI: 10.1111/J.1467-2979.2005.00190.X  1
2004 Chakrabarty P. Cichlid biogeography: Comment and review Fish and Fisheries. 5: 97-119. DOI: 10.1111/J.1467-2979.2004.00148.X  1
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