Robin Waples, Ph.D. - Publications

Affiliations: 
National Marine Fisheries Service, Newport, OR, United States 
Area:
population genetics

83 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Waples RS. Practical application of the linkage disequilibrium method for estimating contemporary effective population size: A review. Molecular Ecology Resources. 24: e13879. PMID 37873672 DOI: 10.1111/1755-0998.13879  0.309
2023 Gargiulo R, Waples RS, Grow AK, Shefferson RP, Viruel J, Fay MF, Kull T. Effective population size in a partially clonal plant is not predicted by the number of genetic individuals. Evolutionary Applications. 16: 750-766. PMID 36969138 DOI: 10.1111/eva.13535  0.344
2022 Waples RS, Ford MJ, Nichols K, Kardos M, Myers J, Thompson TQ, Anderson EC, Koch IJ, McKinney G, Miller MR, Naish K, Narum SR, O'Malley KG, Pearse DE, Pess GR, et al. Implications of Large-Effect Loci for Conservation: A Review and Case Study with Pacific Salmon. The Journal of Heredity. 113: 121-144. PMID 35575083 DOI: 10.1093/jhered/esab069  0.37
2022 Waples RS. What is Ne, anyway? The Journal of Heredity. PMID 35532202 DOI: 10.1093/jhered/esac023  0.366
2022 Waples RS, Ford MJ, Nichols K, Kardos M, Myers J, Thompson TQ, Anderson EC, Koch IJ, McKinney G, Miller MR, Naish K, Narum SR, O'Malley KG, Pearse DE, Pess GR, et al. Implications of Large-Effect Loci for Conservation: A Review and Case Study with Pacific Salmon. The Journal of Heredity. PMID 35305015 DOI: 10.1093/jhered/esab069  0.37
2019 Waples RS, Naish KA, Primmer CR. Conservation and Management of Salmon in the Age of Genomics. Annual Review of Animal Biosciences. PMID 31730428 DOI: 10.1146/Annurev-Animal-021419-083617  0.327
2019 Lehnert SJ, Kess T, Bentzen P, Kent MP, Lien S, Gilbey J, Clément M, Jeffery NW, Waples RS, Bradbury IR. Genomic signatures and correlates of widespread population declines in salmon. Nature Communications. 10: 2996. PMID 31278264 DOI: 10.1038/S41467-019-10972-W  0.333
2019 Yang L, Waples RS, Baskett ML. Life history and temporal variability of escape events interactively determine the fitness consequences of aquaculture escapees on wild populations. Theoretical Population Biology. PMID 31028784 DOI: 10.1016/J.Tpb.2018.12.006  0.323
2019 Moran BM, Hench K, Waples RS, Höppner MP, Baldwin CC, McMillan WO, Puebla O. The evolution of microendemism in a reef fish (Hypoplectrus maya). Molecular Ecology. PMID 31017341 DOI: 10.1111/mec.15110  0.356
2019 Kitada S, Nakajima K, Hamasaki K, Shishidou H, Waples RS, Kishino H. Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat. Scientific Reports. 9: 5290. PMID 30918306 DOI: 10.1038/s41598-019-39050-3  0.403
2018 Milligan BG, Archer FI, Ferchaud AL, Hand BK, Kierepka EM, Waples RS. Disentangling genetic structure for genetic monitoring of complex populations. Evolutionary Applications. 11: 1149-1161. PMID 30026803 DOI: 10.1111/Eva.12622  0.367
2018 Waples RS, Kays R, Fredrickson RJ, Pacifici K, Mills LS. Is the Red Wolf a Listable Unit Under the US Endangered Species Act? The Journal of Heredity. PMID 29889268 DOI: 10.1093/Jhered/Esy020  0.445
2018 Waples RS, Scribner K, Moore J, Draheim H, Etter D, Boersen M. Accounting for age structure and spatial structure in eco-evolutionary analyses of a large, mobile vertebrate. The Journal of Heredity. PMID 29668993 DOI: 10.1093/Jhered/Esy018  0.389
2018 Marandel F, Lorance P, Berthelé O, Trenkel VM, Waples RS, Lamy J. Estimating effective population size of large marine populations, is it feasible? Fish and Fisheries. 20: 189-198. DOI: 10.1111/faf.12338  0.31
2017 Waples RS, Elz A, Arnsberg BD, Faulkner JR, Hard JJ, Timmins-Schiffman E, Park LK. Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon. Evolutionary Applications. 10: 667-681. PMID 28717387 DOI: 10.1111/eva.12468  0.321
2017 Waples RS, Anderson EC. Purging putative siblings from population genetic datasets: A cautionary view. Molecular Ecology. PMID 28099771 DOI: 10.1111/mec.14022  0.353
2017 Silber GK, Lettrich MD, Thomas PO, Baker JD, Baumgartner M, Becker EA, Boveng P, Dick DM, Fiechter J, Forcada J, Forney KA, Griffis RB, Hare JA, Hobday AJ, Howell D, ... ... Waples RS, et al. Projecting Marine Mammal Distribution in a Changing Climate Frontiers in Marine Science. 4. DOI: 10.3389/Fmars.2017.00413  0.34
2016 Waples RS. Making sense of genetic estimates of effective population size. Molecular Ecology. 25: 4689-91. PMID 27671356 DOI: 10.1111/mec.13814  0.341
2016 Coscia I, Chopelet J, Waples RS, Mann BQ, Mariani S. Sex change and effective population size: implications for population genetic studies in marine fish. Heredity. 117: 251-8. PMID 27507184 DOI: 10.1038/Hdy.2016.50  0.462
2016 Kuparinen A, Hutchings JA, Waples RS. Harvest-induced evolution and effective population size Evolutionary Applications. DOI: 10.1111/eva.12373  0.336
2015 Waters CD, Hard JJ, Brieuc MS, Fast DE, Warheit KI, Waples RS, Knudsen CM, Bosch WJ, Naish KA. Effectiveness of managed gene flow in reducing genetic divergence associated with captive breeding. Evolutionary Applications. 8: 956-71. PMID 26640521 DOI: 10.1111/eva.12331  0.379
2015 Fisch KM, Kozfkay CC, Ivy JA, Ryder OA, Waples RS. Fish Hatchery Genetic Management Techniques: Integrating Theory with Implementation North American Journal of Aquaculture. 77: 343-357. DOI: 10.1080/15222055.2014.999846  0.347
2015 Keith D, Akçakaya HR, Butchart SHM, Collen B, Dulvy NK, Holmes EE, Hutchings JA, Keinath D, Schwartz MK, Shelton AO, Waples RS. Temporal correlations in population trends: Conservation implications from time-series analysis of diverse animal taxa Biological Conservation. 192: 247-257. DOI: 10.1016/J.Biocon.2015.09.021  0.366
2014 Landguth EL, Muhlfeld CC, Waples RS, Jones L, Lowe WH, Whited D, Lucotch J, Neville H, Luikart G. Combining demographic and genetic factors to assess population vulnerability in stream species. Ecological Applications : a Publication of the Ecological Society of America. 24: 1505-24. PMID 29160670 DOI: 10.1890/13-0499.1  0.376
2014 Limborg MT, Waples RK, Seeb JE, Seeb LW. Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation. The Journal of Heredity. 105: 741-51. PMID 25292170 DOI: 10.1093/jhered/esu063  0.381
2014 Seeb LW, Waples RK, Limborg MT, Warheit KI, Pascal CE, Seeb JE. Parallel signatures of selection in temporally isolated lineages of pink salmon. Molecular Ecology. 23: 2473-85. PMID 24762204 DOI: 10.1111/mec.12769  0.398
2014 Larson WA, Seeb LW, Everett MV, Waples RK, Templin WD, Seeb JE. Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha). Evolutionary Applications. 7: 355-69. PMID 24665338 DOI: 10.1111/eva.12128  0.382
2014 Landguth EL, Muhlfeld CC, Waples RS, Jones L, Lowe WH, Whited D, Lucotch J, Neville H, Luikart G. Combining demographic and genetic factors to assess population vulnerability in stream species Ecological Applications. 24: 1505-1524.  0.429
2013 Petrou EL, Hauser L, Waples RS, Seeb JE, Templin WD, Gomez-Uchida D, Seeb LW. Secondary contact and changes in coastal habitat availability influence the nonequilibrium population structure of a salmonid (Oncorhynchus keta). Molecular Ecology. 22: 5848-60. PMID 24118255 DOI: 10.1111/Mec.12543  0.378
2013 Waples RS, Luikart G, Faulkner JR, Tallmon DA. Simple life-history traits explain key effective population size ratios across diverse taxa. Proceedings. Biological Sciences / the Royal Society. 280: 20131339. PMID 23926150 DOI: 10.1098/Rspb.2013.1339  0.364
2013 Sultan SE, Horgan-Kobelski T, Nichols LM, Riggs CE, Waples RK. A resurrection study reveals rapid adaptive evolution within populations of an invasive plant. Evolutionary Applications. 6: 266-78. PMID 23798976 DOI: 10.1111/j.1752-4571.2012.00287.x  0.396
2013 Neel MC, McKelvey K, Ryman N, Lloyd MW, Short Bull R, Allendorf FW, Schwartz MK, Waples RS. Estimation of effective population size in continuously distributed populations: there goes the neighborhood. Heredity. 111: 189-99. PMID 23652561 DOI: 10.1038/Hdy.2013.37  0.339
2013 Peel D, Waples RS, Macbeth GM, Do C, Ovenden JR. Accounting for missing data in the estimation of contemporary genetic effective population size (N(e) ). Molecular Ecology Resources. 13: 243-53. PMID 23280157 DOI: 10.1111/1755-0998.12049  0.308
2013 van Doornik DM, Eddy DL, Waples RS, Boe SJ, Hoffnagle TL, Berntson EA, Moran P. Genetic Monitoring of Threatened Chinook Salmon Populations: Estimating Introgression of Nonnative Hatchery Stocks and Temporal Genetic Changes North American Journal of Fisheries Management. 33: 693-706. DOI: 10.1080/02755947.2013.790861  0.354
2012 Christie MR, Marine ML, French RA, Waples RS, Blouin MS. Effective size of a wild salmonid population is greatly reduced by hatchery supplementation. Heredity. 109: 254-60. PMID 22805657 DOI: 10.1038/Hdy.2012.39  0.381
2012 Hutchings JA, Butchart SH, Collen B, Schwartz MK, Waples RS. Red flags: correlates of impaired species recovery. Trends in Ecology & Evolution. 27: 542-6. PMID 22784411 DOI: 10.1016/J.Tree.2012.06.005  0.313
2012 Tallmon DA, Waples RS, Gregovich D, Schwartz MK. Detecting population recovery using gametic disequilibrium-based effective population size estimates Conservation Genetics Resources. 4: 987-989. DOI: 10.1007/S12686-012-9689-3  0.322
2011 Waples RS, Do C, Chopelet J. Calculating Ne and Ne/N in age-structured populations: a hybrid Felsenstein-Hill approach. Ecology. 92: 1513-22. PMID 21870625  0.326
2011 Waples RS, England PR. Estimating contemporary effective population size on the basis of linkage disequilibrium in the face of migration. Genetics. 189: 633-44. PMID 21840864 DOI: 10.1534/genetics.111.132233  0.319
2011 Reed TE, Schindler DE, Hague MJ, Patterson DA, Meir E, Waples RS, Hinch SG. Time to evolve? Potential evolutionary responses of fraser river sockeye salmon to climate change and effects on persistence. Plos One. 6: e20380. PMID 21738573 DOI: 10.1371/Journal.Pone.0020380  0.371
2011 Hare MP, Nunney L, Schwartz MK, Ruzzante DE, Burford M, Waples RS, Ruegg K, Palstra F. Understanding and estimating effective population size for practical application in marine species management. Conservation Biology : the Journal of the Society For Conservation Biology. 25: 438-49. PMID 21284731 DOI: 10.1111/J.1523-1739.2010.01637.X  0.308
2011 Reed TE, Schindler DE, Waples RS. Interacting effects of phenotypic plasticity and evolution on population persistence in a changing climate. Conservation Biology : the Journal of the Society For Conservation Biology. 25: 56-63. PMID 20646016 DOI: 10.1111/j.1523-1739.2010.01552.x  0.372
2011 van DM, Waples R, Baird MC, Moran P, Berntson EA. Genetic monitoring reveals genetic stability within and among threatened Chinook salmon populations in the Salmon River, Idaho North American Journal of Fisheries Management. 31: 96-105. DOI: 10.1080/02755947.2011.562443  0.363
2011 Waples RS, Aebersold PB, Winans GA. Population Genetic Structure and Life History Variability inOncorhynchus nerkafrom the Snake River Basin Transactions of the American Fisheries Society. 140: 716-733. DOI: 10.1080/00028487.2011.584491  0.357
2010 Waples RS, Do C. Linkage disequilibrium estimates of contemporary N e using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evolutionary Applications. 3: 244-62. PMID 25567922 DOI: 10.1111/j.1752-4571.2009.00104.x  0.334
2010 Laikre L, Schwartz MK, Waples RS, Ryman N. Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals. Trends in Ecology & Evolution. 25: 520-9. PMID 20688414 DOI: 10.1016/j.tree.2010.06.013  0.325
2010 Reed TE, Waples RS, Schindler DE, Hard JJ, Kinnison MT. Phenotypic plasticity and population viability: the importance of environmental predictability. Proceedings. Biological Sciences / the Royal Society. 277: 3391-400. PMID 20554553 DOI: 10.1098/rspb.2010.0771  0.313
2010 Laikre L, Allendorf FW, Aroner LC, Baker CS, Gregovich DP, Hansen MM, Jackson JA, Kendall KC, McKelvey K, Neel MC, Olivieri I, Ryman N, Schwartz MK, Bull RS, Stetz JB, ... ... Waples RS, et al. Neglect of genetic diversity in implementation of the convention on biological diversity. Conservation Biology : the Journal of the Society For Conservation Biology. 24: 86-8. PMID 20028412 DOI: 10.1111/J.1523-1739.2009.01425.X  0.358
2009 Waples RS, Beechie T, Pess GR. Evolutionary history, habitat disturbance regimes, and anthropogenic changes: What do these mean for resilience of Pacific salmon populations? Ecology and Society. 14. DOI: 10.5751/ES-02626-140103  0.39
2009 Andersen LW, Born EW, Doidge DW, Gjertz I, Wiig, Waples RS. Genetic signals of historic and recent migration between sub-populations of Atlantic walrus Odobenus rosmarus rosmarus west and east of Greenland Endangered Species Research. 9: 197-211. DOI: 10.3354/esr00242  0.365
2009 Chopelet J, Waples RS, Mariani S. Sex change and the genetic structure of marine fish populations Fish and Fisheries. 10: 329-343. DOI: 10.1111/J.1467-2979.2009.00329.X  0.449
2008 Williams JG, Zabel RW, Waples RS, Hutchings JA, Connor WP. Potential for anthropogenic disturbances to influence evolutionary change in the life history of a threatened salmonid. Evolutionary Applications. 1: 271-85. PMID 25567631 DOI: 10.1111/j.1752-4571.2008.00027.x  0.308
2008 Waples RS, Pess GR, Beechie T. Evolutionary history of Pacific salmon in dynamic environments. Evolutionary Applications. 1: 189-206. PMID 25567626 DOI: 10.1111/j.1752-4571.2008.00023.x  0.367
2008 Waples RS, Zabel RW, Scheuerell MD, Sanderson BL. Evolutionary responses by native species to major anthropogenic changes to their ecosystems: Pacific salmon in the Columbia River hydropower system. Molecular Ecology. 17: 84-96. PMID 18268786 DOI: 10.1111/J.1365-294X.2007.03510.X  0.315
2008 Chopelet J, Mariani S, Waples R. Does sex-change increase population genetic structure in marine fish? Comparative Biochemistry and Physiology Part a: Molecular & Integrative Physiology. 150: S203. DOI: 10.1016/J.Cbpa.2008.04.568  0.37
2008 Waples RS, Dickhoff WW, Hauser L, Ryman N. Six decades of fishery genetics: Taking stock Fisheries. 33: 76-79.  0.301
2007 Gustafson RG, Waples RS, Myers JM, Weitkamp LA, Bryant GJ, Johnson OW, Hard JJ. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology : the Journal of the Society For Conservation Biology. 21: 1009-20. PMID 17650251 DOI: 10.1111/j.1523-1739.2007.00693.x  0.469
2007 Waples RS, Adams PB, Bohnsack J, Taylor BL. A biological framework for evaluating whether a species is threatened or endangered in a significant portion of its range. Conservation Biology : the Journal of the Society For Conservation Biology. 21: 964-74. PMID 17650247 DOI: 10.1111/j.1523-1739.2007.00730.x  0.386
2007 Araki H, Waples RS, Ardren WR, Cooper B, Blouin MS. Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms. Molecular Ecology. 16: 953-66. PMID 17305853 DOI: 10.1111/j.1365-294X.2006.03206.x  0.364
2007 Waples RS, Yokota M. Temporal estimates of effective population size in species with overlapping generations. Genetics. 175: 219-33. PMID 17110487 DOI: 10.1534/genetics.106.065300  0.358
2007 Schwartz MK, Luikart G, Waples RS. Genetic monitoring as a promising tool for conservation and management. Trends in Ecology & Evolution. 22: 25-33. PMID 16962204 DOI: 10.1016/j.tree.2006.08.009  0.306
2007 Waples RS, Masuda M, Pella J. SALMONNb: A program for computing cohort-specific effective population sizes (Nb) in Pacific salmon and other semelparous species using the temporal method Molecular Ecology Notes. 7: 21-24. DOI: 10.1111/j.1471-8286.2006.01567.x  0.311
2006 Waples RS, Gaggiotti O. What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Molecular Ecology. 15: 1419-39. PMID 16629801 DOI: 10.1111/J.1365-294X.2006.02890.X  0.339
2004 Tallmon DA, Luikart G, Waples RS. The alluring simplicity and complex reality of genetic rescue. Trends in Ecology & Evolution. 19: 489-96. PMID 16701312 DOI: 10.1016/J.Tree.2004.07.003  0.342
2004 Waples RS, Teel DJ, Myers JM, Marshall AR. Life-history divergence in Chinook salmon: historic contingency and parallel evolution. Evolution; International Journal of Organic Evolution. 58: 386-403. PMID 15068355 DOI: 10.1111/j.0014-3820.2004.tb01654.x  0.416
2002 Waples RS. Effective size of fluctuating salmon populations. Genetics. 161: 783-91. PMID 12072473  0.351
2001 Waples RS, Gustafson RG, Weitkamp LA, Myers JM, Jjohnson OW, Busby PJ, Hard JJ, Bryant GJ, Waknitz FW, Nelly K, Teel D, Grant WS, Winans GA, Phelps S, Marshall A, et al. Characterizing diversity in salmon from the Pacific Northwest Journal of Fish Biology. 59: 1-41. DOI: 10.1111/j.1095-8649.2001.tb01376.x  0.398
1998 Waples RS. Separating the wheat from the chaff: Patterns of genetic differentiation in high gene flow species Journal of Heredity. 89: 438-450. DOI: 10.1093/jhered/89.5.438  0.328
1998 Waples RS. Evolutionarily significant units, distinct population segments, and the endangered species act: Reply to Pennock and Dimmick Conservation Biology. 12: 718-721.  0.363
1997 Moran P, Dightman DA, Waples RS, Park LK. PCR-RFLP analysis reveals substantial population-level variation in the introns of Pacific salmon (Oncorhynchus spp.) Molecular Marine Biology and Biotechnology. 6: 315-327.  0.351
1996 Winans GA, Aebersold PB, Waples RS. Allozyme variability of Oncorhynchus nerka in the Pacific Northwest, with special consideration to populations of Redfish Lake, Idaho Transactions of the American Fisheries Society. 125: 645-663.  0.376
1994 Waples RS, Do C. Genetic Risk Associated with Supplementation of Pacific Salmonids: Captive Broodstock Programs Canadian Journal of Fisheries and Aquatic Sciences. 51: 310-329. DOI: 10.1139/f94-318  0.339
1994 Waples RS. Genetic Considerations in Recovery Efforts for Pacific Salmon Conservation Biology. 8: 884-886. DOI: 10.1046/j.1523-1739.1994.08030863-12.x  0.317
1992 Hedgecock D, Chow V, Waples RS. Effective population numbers of shellfish broodstocks estimated from temporal variance in allelic frequencies Aquaculture. 108: 215-232. DOI: 10.1016/0044-8486(92)90108-W  0.367
1991 Waples RS. Pacific salmon, Oncorhynchus spp., and the definition of "species' under the Endangered Species Act Marine Fisheries Review. 53: 11-22.  0.311
1991 Waples RS. Genetic methods for estimating the effective size of cetacean populations Report - International Whaling Commission, Special Issue. 13: 279-300.  0.32
1990 Smouse PE, Waples RS, Tworek JA. A Genetic Mixture Analysis for use with Incomplete Source Population Data Canadian Journal of Fisheries and Aquatic Sciences. 47: 620-634. DOI: 10.1139/F90-070  0.37
1990 Waples RS. Conservation genetics of Pacific salmon. III. Estimating effective population size Journal of Heredity. 81: 277-289. DOI: 10.1093/oxfordjournals.jhered.a110990  0.362
1990 Waples RS. Conservation genetics of Pacific salmon. II. Effective population size and the rate of loss of genetic variability Journal of Heredity. 81: 267-276. DOI: 10.1093/oxfordjournals.jhered.a110989  0.35
1987 Waples RS. A MULTISPECIES APPROACH TO THE ANALYSIS OF GENE FLOW IN MARINE SHORE FISHES. Evolution; International Journal of Organic Evolution. 41: 385-400. PMID 28568763 DOI: 10.1111/j.1558-5646.1987.tb05805.x  0.441
1986 Rosenblatt RH, Waples RS. A Genetic Comparison of Allopatric Populations of Shore Fish Species from the Eastern and Central Pacific Ocean: Dispersal or Vicariance? Copeia. 1986: 275. DOI: 10.2307/1444988  0.493
1984 Wilson RR, Waples RS. Electrophoretic and biometric variability in the abyssal grenadier Coryphaenoides armatus of the western North Atlantic, eastern South Pacific and eastern North Pacific Oceans Marine Biology. 80: 227-237. DOI: 10.1007/Bf00392817  0.491
1983 Wilson RR, Waples RS. Distribution, morphology, and biochemical genetics of Coryphaenoides armatus and C. yaquinae (Pisces:Macrouridae) in the central and eastern North Pacific Deep Sea Research Part a, Oceanographic Research Papers. 30: 1127-1145. DOI: 10.1016/0198-0149(83)90092-4  0.353
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