Shawn Burgess - Publications

Affiliations: 
NHGRI National Institutes of Health, Bethesda, MD 

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Burgess S. Decision letter: Yap-lin28a axis targets let7-Wnt pathway to restore progenitors for initiating regeneration Elife. DOI: 10.7554/Elife.55771.Sa1  0.306
2017 Crawford NG, Kelly DE, Hansen MEB, Beltrame MH, Fan S, Bowman SL, Jewett E, Ranciaro A, Thompson S, Lo Y, Pfeifer SP, Jensen JD, Campbell MC, Beggs W, Hormozdiari F, ... ... Burgess S, et al. Loci associated with skin pigmentation identified in African populations. Science (New York, N.Y.). PMID 29025994 DOI: 10.1126/Science.Aan8433  0.307
2016 Watkins-Chow DE, Varshney GK, Garrett LJ, Chen Z, Jimenez EA, Rivas C, Bishop KS, Sood R, Harper UL, Pavan WJ, Burgess SM. Highly-Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection. G3 (Bethesda, Md.). PMID 28040780 DOI: 10.1534/g3.116.038091  0.332
2016 Varshney GK, Carrington B, Pei W, Bishop K, Chen Z, Fan C, Xu L, Jones M, LaFave MC, Ledin J, Sood R, Burgess SM. A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish. Nature Protocols. 11: 2357-2375. PMID 27809318 DOI: 10.1038/Nprot.2016.141  0.419
2016 Burgess S. Genomics: A matched set of frog sequences. Nature. 538: 320-321. PMID 27762363 DOI: 10.1038/538320A  0.363
2015 Varshney GK, Sood R, Burgess SM. Understanding and Editing the Zebrafish Genome. Advances in Genetics. 92: 1-52. PMID 26639914 DOI: 10.1016/bs.adgen.2015.09.002  0.37
2015 Varshney GK, Zhang S, Pei W, Adomako-Ankomah A, Fohtung J, Schaffer K, Carrington B, Maskeri A, Slevin C, Wolfsberg T, Ledin J, Sood R, Burgess SM. CRISPRz: a database of zebrafish validated sgRNAs. Nucleic Acids Research. PMID 26438539 DOI: 10.1093/Nar/Gkv998  0.469
2015 Carrington B, Varshney GK, Burgess SM, Sood R. CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic Acids Research. PMID 26253739 DOI: 10.1093/nar/gkv802  0.383
2015 Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, ... ... Burgess SM, et al. High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome Research. 25: 1030-42. PMID 26048245 DOI: 10.1101/Gr.186379.114  0.419
2015 Quach HN, Tao S, Vrljicak P, Joshi A, Ruan H, Sukumaran R, Varshney GK, LaFave MC, Burgess SM, Winkler C, Emelyanov A, Parinov S, Sampath K. A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. G3 (Bethesda, Md.). 5: 1283-99. PMID 25840430 DOI: 10.1534/G3.114.015842  0.34
2014 Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM. trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags. Bmc Bioinformatics. 15: 329. PMID 25311246 DOI: 10.1186/1471-2105-15-329  0.528
2014 Xu H, Ye D, Behra M, Burgess S, Chen S, Lin F. Gβ1 controls collective cell migration by regulating the protrusive activity of leader cells in the posterior lateral line primordium. Developmental Biology. 385: 316-27. PMID 24201188 DOI: 10.1016/J.Ydbio.2013.10.027  0.333
2014 Varshney GK, Burgess SM. Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. Briefings in Functional Genomics. 13: 82-94. PMID 24162064 DOI: 10.1093/bfgp/elt042  0.374
2013 Chen L, Stuart L, Ohsumi TK, Burgess S, Varshney GK, Dastur A, Borowsky M, Benes C, Lacy-Hulbert A, Schmidt EV. Transposon activation mutagenesis as a screening tool for identifying resistance to cancer therapeutics. Bmc Cancer. 13: 93. PMID 23442791 DOI: 10.1186/1471-2407-13-93  0.328
2013 Varshney GK, Lu J, Gildea DE, Huang H, Pei W, Yang Z, Huang SC, Schoenfeld D, Pho NH, Casero D, Hirase T, Mosbrook-Davis D, Zhang S, Jao LE, Zhang B, ... ... Burgess SM, et al. A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome Research. 23: 727-35. PMID 23382537 DOI: 10.1101/Gr.151464.112  0.351
2013 Varshney GK, Huang H, Zhang S, Lu J, Gildea DE, Yang Z, Wolfsberg TG, Lin S, Burgess SM. The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion. Nucleic Acids Research. 41: D861-4. PMID 23180778 DOI: 10.1093/nar/gks946  0.333
2012 Liang J, Wang D, Renaud G, Wolfsberg TG, Wilson AF, Burgess SM. The stat3/socs3a pathway is a key regulator of hair cell regeneration in zebrafish. [corrected]. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 10662-73. PMID 22855815 DOI: 10.1523/Jneurosci.5785-10.2012  0.448
2012 Milla LA, Cortés CR, Hodar C, Oñate MG, Cambiazo V, Burgess SM, Palma V. Yeast-based assay identifies novel Shh/Gli target genes in vertebrate development. Bmc Genomics. 13: 2. PMID 22214306 DOI: 10.1186/1471-2164-13-2  0.39
2011 Liang J, Renaud G, Burgess SM. Sequencing-based expression profiling in zebrafish. Methods in Cell Biology. 104: 379-99. PMID 21924174 DOI: 10.1016/B978-0-12-374814-0.00021-5  0.506
2010 Gallardo VE, Liang J, Behra M, Elkahloun A, Villablanca EJ, Russo V, Allende ML, Burgess SM. Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish. Bmc Developmental Biology. 10: 120. PMID 21144052 DOI: 10.1186/1471-213X-10-120  0.525
2009 Liang J, Burgess SM. Gross and fine dissection of inner ear sensory epithelia in adult zebrafish (Danio rerio). Journal of Visualized Experiments : Jove. PMID 19488023 DOI: 10.3791/1211  0.449
2009 Gomez GA, Veldman MB, Zhao Y, Burgess S, Lin S. Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. Plos One. 4: e4994. PMID 19308258 DOI: 10.1371/Journal.Pone.0004994  0.334
2008 Jao LE, Maddison L, Chen W, Burgess SM. Using retroviruses as a mutagenesis tool to explore the zebrafish genome. Briefings in Functional Genomics & Proteomics. 7: 427-43. PMID 18977782 DOI: 10.1093/bfgp/eln038  0.305
2006 Antonellis A, Lee-Lin SQ, Wasterlain A, Leo P, Quezado M, Goldfarb LG, Myung K, Burgess S, Fischbeck KH, Green ED. Functional analyses of glycyl-tRNA synthetase mutations suggest a key role for tRNA-charging enzymes in peripheral axons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 10397-406. PMID 17035524 DOI: 10.1523/Jneurosci.1671-06.2006  0.318
2005 Yant SR, Wu X, Huang Y, Garrison B, Burgess SM, Kay MA. High-resolution genome-wide mapping of transposon integration in mammals. Molecular and Cellular Biology. 25: 2085-94. PMID 15743807 DOI: 10.1128/Mcb.25.6.2085-2094.2005  0.328
2004 Youngman MJ, Hobbs AE, Burgess SM, Srinivasan M, Jensen RE. Mmm2p, a mitochondrial outer membrane protein required for yeast mitochondrial shape and maintenance of mtDNA nucleoids. The Journal of Cell Biology. 164: 677-88. PMID 14981098 DOI: 10.1083/Jcb.200308012  0.681
2004 Nakai H, Wu X, Fuess S, Storm T, Burgess S, Grompe M, Kay MA. 13. Hot Spots for rAAV2 Vector Integration in Mice Molecular Therapy. 9. DOI: 10.1016/J.Ymthe.2004.05.094  0.34
2002 Golling G, Amsterdam A, Sun Z, Antonelli M, Maldonado E, Chen W, Burgess S, Haldi M, Artzt K, Farrington S, Lin SY, Nissen RM, Hopkins N. Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development Nature Genetics. 31: 135-140. PMID 12006978 DOI: 10.1038/Ng896  0.408
2000 Burgess S, Hopkins N. Use of pseudotyped retroviruses in zebrafish as genetic tags Methods in Enzymology. 327: 145-161. PMID 11044980 DOI: 10.1016/S0076-6879(00)27273-X  0.367
1999 Amsterdam A, Burgess S, Golling G, Chen W, Sun Z, Townsend K, Farrington S, Haldi M, Hopkins N. A large-scale insertional mutagenesis screen in zebrafish Genes and Development. 13: 2713-2724. PMID 10541557 DOI: 10.1101/Gad.13.20.2713  0.375
1997 Amsterdam A, Yoon C, Allende M, Becker T, Kawakami K, Burgess S, Gaiano N, Hopkins N. Retrovirus-mediated insertional mutagenesis in zebrafish and identification of a molecular marker for embryonic germ cells. Cold Spring Harbor Symposia On Quantitative Biology. 62: 437-50. PMID 9598379 DOI: 10.1101/Sqb.1997.062.01.052  0.328
1994 Burgess SM, Delannoy M, Jensen RE. MMM1 encodes a mitochondrial outer membrane protein essential for establishing and maintaining the structure of yeast mitochondria Journal of Cell Biology. 126: 1375-1391. PMID 8089172 DOI: 10.1083/Jcb.126.6.1375  0.571
1991 Zon LI, Mather C, Burgess S, Bolce ME, Harland RM, Orkin SH. Expression of GATA-binding proteins during embryonic development in Xenopus laevis. Proceedings of the National Academy of Sciences of the United States of America. 88: 10642-6. PMID 1961730 DOI: 10.1073/Pnas.88.23.10642  0.316
1990 Zon LI, Tsai SF, Burgess S, Matsudaira P, Bruns GAP, Orkin SH. The major human erythroid DNA-binding protein (GF-1): Primary sequence and localization of the gene to the X chromosome Proceedings of the National Academy of Sciences of the United States of America. 87: 668-672. PMID 2300555 DOI: 10.1073/Pnas.87.2.668  0.312
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