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James O. McInerney, Ph.D - Publications

Affiliations: 
1999-2015 Biology National University of Ireland Maynooth, Maynooth, County Kildare, Ireland 
 2015- Faculty of Biology Medicine and Health The University of Manchester (United Kingdom) 
Area:
Molecular evolution
Website:
http://mcinerneylab.com/
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104 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Beavan AJS, Domingo-Sananes MR, McInerney JO. Contingency, repeatability, and predictability in the evolution of a prokaryotic pangenome. Proceedings of the National Academy of Sciences of the United States of America. 121: e2304934120. PMID 38147560 DOI: 10.1073/pnas.2304934120  0.411
2022 Beavan AJS, McInerney JO. Gene essentiality evolves across a pangenome. Nature Microbiology. 7: 1510-1511. PMID 36097169 DOI: 10.1038/s41564-022-01231-8  0.344
2021 Hall RJ, Whelan FJ, Cummins EA, Connor C, McNally A, McInerney JO. Gene-gene relationships in an accessory genome are linked to function and mobility. Microbial Genomics. 7. PMID 34499026 DOI: 10.1099/mgen.0.000650  0.416
2021 Whelan FJ, Hall RJ, McInerney JO. Evidence for selection in the abundant accessory gene content of a prokaryote pangenome. Molecular Biology and Evolution. PMID 33963386 DOI: 10.1093/molbev/msab139  0.43
2021 Domingo-Sananes MR, McInerney JO. Mechanisms That Shape Microbial Pangenomes. Trends in Microbiology. PMID 33423895 DOI: 10.1016/j.tim.2020.12.004  0.426
2020 Hall RJ, Whelan FJ, McInerney JO, Ou Y, Domingo-Sananes MR. Horizontal Gene Transfer as a Source of Conflict and Cooperation in Prokaryotes. Frontiers in Microbiology. 11: 1569. PMID 32849327 DOI: 10.3389/Fmicb.2020.01569  0.492
2020 Whelan FJ, Rusilowicz M, McInerney JO. Coinfinder: detecting significant associations and dissociations in pangenomes. Microbial Genomics. PMID 32100706 DOI: 10.1099/mgen.0.000338  0.362
2019 Ou Y, McInerney JO. Eukaryote Genes Are More Likely than Prokaryote Genes to Be Composites. Genes. 10. PMID 31466252 DOI: 10.3390/Genes10090648  0.474
2019 Am M, Hyland EM, Cormican P, Moran RJ, Webb AE, Lee KD, Hernandez J, Prado-Martinez J, Creevey CJ, Aspden JL, McInerney JO, Marques-Bonet T, Mj O. Gene Fusions derived by transcriptional readthrough are Driven by Segmental Duplication in Human. Genome Biology and Evolution. PMID 31400206 DOI: 10.1093/Gbe/Evz163  0.81
2018 Méheust R, Bhattacharya D, Pathmanathan JS, McInerney JO, Lopez P, Bapteste E. Formation of chimeric genes with essential functions at the origin of eukaryotes. Bmc Biology. 16: 30. PMID 29534719 DOI: 10.1186/S12915-018-0500-0  0.478
2018 Corel E, Méheust R, Watson AK, McInerney JO, Lopez P, Bapteste E. Bipartite network analysis of gene sharings in the microbial world. Molecular Biology and Evolution. PMID 29346651 DOI: 10.1093/Molbev/Msy001  0.495
2017 McInerney JO, McNally A, O'Connell MJ. Reply to 'The population genetics of pangenomes'. Nature Microbiology. 2: 1575. PMID 29176701 DOI: 10.1038/S41564-017-0068-4  0.476
2017 McInerney JO, Erwin DH. The role of public goods in planetary evolution. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 375. PMID 29133456 DOI: 10.1098/Rsta.2016.0359  0.373
2017 Bruns H, Crüsemann M, Letzel AC, Alanjary M, McInerney JO, Jensen PR, Schulz S, Moore BS, Ziemert N. Function-related replacement of bacterial siderophore pathways. The Isme Journal. PMID 28809850 DOI: 10.1038/Ismej.2017.137  0.455
2017 McInerney JO. Horizontal gene transfer is less frequent in eukaryotes than prokaryotes but can be important (retrospective on DOI 10.1002/bies.201300095). Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 28418075 DOI: 10.1002/Bies.201700002  0.417
2017 McInerney JO, McNally A, O'Connell MJ. Why prokaryotes have pangenomes. Nature Microbiology. 2: 17040. PMID 28350002 DOI: 10.1038/Nmicrobiol.2017.40  0.601
2017 McInerney JO, O'Connell MJ. Microbiology: Mind the gaps in cellular evolution. Nature. 541: 297-299. PMID 28102241 DOI: 10.1038/Nature21113  0.58
2016 McNally A, Oren Y, Kelly D, Pascoe B, Dunn S, Sreecharan T, Vehkala M, Välimäki N, Prentice MB, Ashour A, Avram O, Pupko T, Dobrindt U, Literak I, Guenther S, ... ... McInerney JO, et al. Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations. Plos Genetics. 12: e1006280. PMID 27618184 DOI: 10.1371/Journal.Pgen.1006280  0.461
2016 McInerney JO. Evolution: A four billion year old metabolism. Nature Microbiology. 1: 16139. PMID 27562267 DOI: 10.1038/Nmicrobiol.2016.139  0.341
2016 Fondi M, Karkman A, Tamminen MV, Bosi E, Virta M, Fani R, Alm E, McInerney JO. "Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis. Genome Biology and Evolution. 8: 1388-400. PMID 27190206 DOI: 10.1093/Gbe/Evw077  0.451
2015 Akanni WA, Siu-Ting K, Creevey CJ, McInerney JO, Wilkinson M, Foster PG, Pisani D. Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370: 20140337. PMID 26323767 DOI: 10.1098/Rstb.2014.0337  0.807
2015 McInerney J, Pisani D, O'Connell MJ. The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26323755 DOI: 10.1098/Rstb.2014.0323  0.663
2015 Ku C, Nelson-Sathi S, Roettger M, Sousa FL, Lockhart PJ, Bryant D, Hazkani-Covo E, McInerney JO, Landan G, Martin WF. Endosymbiotic origin and differential loss of eukaryotic genes. Nature. 524: 427-32. PMID 26287458 DOI: 10.1038/Nature14963  0.526
2015 Nelson-Sathi S, Sousa FL, Roettger M, Lozada-Chávez N, Thiergart T, Janssen A, Bryant D, Landan G, Schönheit P, Siebers B, McInerney JO, Martin WF. Origins of major archaeal clades correspond to gene acquisitions from bacteria. Nature. 517: 77-80. PMID 25317564 DOI: 10.1038/Nature13805  0.52
2014 McInerney JO, O'Connell MJ. Evolutionary developmental biology: Ghost locus appears. Nature. 514: 570-1. PMID 25355355 DOI: 10.1038/514570A  0.665
2014 Dagan T, Bapteste E, McInerney JO, Martin WF. SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report Genome Biology and Evolution. 6: 2206-2209. PMID 25115940 DOI: 10.1093/Gbe/Evu173  0.394
2014 McInerney JO, O'Connell MJ, Pisani D. The hybrid nature of the Eukaryota and a consilient view of life on Earth. Nature Reviews. Microbiology. 12: 449-55. PMID 24814066 DOI: 10.1038/Nrmicro3271  0.66
2014 Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C, Wray G, Li J, He W, Wang Z, Fu W, ... ... McInerney JO, et al. Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears. Cell. 157: 785-94. PMID 24813606 DOI: 10.1016/J.Cell.2014.03.054  0.777
2014 Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO. A pluralistic account of homology: adapting the models to the data. Molecular Biology and Evolution. 31: 501-16. PMID 24273322 DOI: 10.1093/Molbev/Mst228  0.821
2014 Bogumil D, Alvarez-Ponce D, Landan G, McInerney JO, Dagan T. Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis. Molecular Biology and Evolution. 31: 410-8. PMID 24188869 DOI: 10.1093/Molbev/Mst212  0.726
2013 McInerney JO. More than tree dimensions: inter-lineage evolution's ecological importance. Trends in Ecology & Evolution. 28: 624-625. PMID 24035465 DOI: 10.1016/J.Tree.2013.09.002  0.466
2013 Doherty A, McInerney JO. Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebrates Molecular Biology and Evolution. 30: 2263-2267. PMID 23883522 DOI: 10.1093/Molbev/Mst128  0.61
2013 Halary S, McInerney JO, Lopez P, Bapteste E. EGN: a wizard for construction of gene and genome similarity networks. Bmc Evolutionary Biology. 13: 146. PMID 23841456 DOI: 10.1186/1471-2148-13-146  0.479
2013 Morgan CC, Foster PG, Webb AE, Pisani D, McInerney JO, O'Connell MJ. Heterogeneous models place the root of the placental mammal phylogeny. Molecular Biology and Evolution. 30: 2145-56. PMID 23813979 DOI: 10.1093/Molbev/Mst117  0.783
2013 Bapteste E, van Iersel L, Janke A, Kelchner S, Kelk S, McInerney JO, Morrison DA, Nakhleh L, Steel M, Stougie L, Whitfield J. Networks: Expanding evolutionary thinking Trends in Genetics. 29: 439-441. PMID 23764187 DOI: 10.1016/J.Tig.2013.05.007  0.363
2013 Alvarez-Ponce D, Lopez P, Bapteste E, McInerney JO. Gene similarity networks provide tools for understanding eukaryote origins and evolution. Proceedings of the National Academy of Sciences of the United States of America. 110: E1594-603. PMID 23576716 DOI: 10.1073/Pnas.1211371110  0.767
2013 Svinti V, Cotton JA, McInerney JO. New approaches for unravelling reassortment pathways. Bmc Evolutionary Biology. 13: 1. PMID 23279962 DOI: 10.1186/1471-2148-13-1  0.785
2012 Nelson-Sathi S, Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF. Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proceedings of the National Academy of Sciences of the United States of America. 109: 20537-20542. PMID 23184964 DOI: 10.1073/Pnas.1209119109  0.463
2012 Feuda R, Hamilton SC, McInerney JO, Pisani D. Metazoan opsin evolution reveals a simple route to animal vision. Proceedings of the National Academy of Sciences of the United States of America. 109: 18868-72. PMID 23112152 DOI: 10.1073/Pnas.1204609109  0.768
2012 Bapteste E, Lopez P, Bouchard F, Baquero F, McInerney JO, Burian RM. Evolutionary analyses of non-genealogical bonds produced by introgressive descent. Proceedings of the National Academy of Sciences of the United States of America. 109: 18266-72. PMID 23090996 DOI: 10.1073/Pnas.1206541109  0.364
2012 Doherty A, Alvarez-Ponce D, McInerney JO. Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network. Molecular Biology and Evolution. 29: 3563-73. PMID 22723304 DOI: 10.1093/Molbev/Mss165  0.801
2011 McInerney J, Cummins C, Haggerty L. Goods-thinking vs. tree-thinking: Finding a place for mobile genetic elements. Mobile Genetic Elements. 1: 304-308. PMID 22545244 DOI: 10.4161/Mge.19153  0.765
2011 McInerney JO, Pisani D, Bapteste E, O'Connell MJ. The Public Goods Hypothesis for the evolution of life on Earth. Biology Direct. 6: 41. PMID 21861918 DOI: 10.1186/1745-6150-6-41  0.735
2011 McInerney JO, Martin WF, Koonin EV, Allen JF, Galperin MY, Lane N, Archibald JM, Embley TM. Planctomycetes and eukaryotes: a case of analogy not homology. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 810-7. PMID 21858844 DOI: 10.1002/Bies.201100045  0.399
2011 Cummins CA, McInerney JO. A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases Systematic Biology. 60: 833-844. PMID 21804093 DOI: 10.1093/Sysbio/Syr064  0.762
2011 Alvarez-Ponce D, McInerney JO. The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences. Genome Biology and Evolution. 3: 782-90. PMID 21795752 DOI: 10.1093/Gbe/Evr073  0.757
2010 Cotton JA, McInerney JO. Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function. Proceedings of the National Academy of Sciences of the United States of America. 107: 17252-5. PMID 20852068 DOI: 10.1073/Pnas.1000265107  0.648
2009 Haggerty LS, Martin FJ, Fitzpatrick DA, McInerney JO. Gene and genome trees conflict at many levels. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2209-19. PMID 19571241 DOI: 10.1098/Rstb.2009.0042  0.806
2009 Ragan MA, McInerney JO, Lake JA. The network of life: genome beginnings and evolution. Introduction. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2169-75. PMID 19571237 DOI: 10.1098/Rstb.2009.0046  0.396
2009 Creevey CJ, McInerney JO. Trees from trees: construction of phylogenetic supertrees using clann. Methods in Molecular Biology (Clifton, N.J.). 537: 139-61. PMID 19378143 DOI: 10.1007/978-1-59745-251-9_7  0.659
2009 Hatadani LM, McInerney JO, Medeiros HFd, Junqueira ACM, Azeredo-Espin AMd, Klaczko LB. Molecular phylogeny of the Drosophila tripunctata and closely related species groups (Diptera: Drosophilidae) Molecular Phylogenetics and Evolution. 51: 595-600. PMID 19285146 DOI: 10.1016/J.Ympev.2009.02.022  0.347
2009 Martin FJ, McInerney JO. Recurring cluster and operon assembly for Phenylacetate degradation genes Bmc Evolutionary Biology. 9. PMID 19208251 DOI: 10.1186/1471-2148-9-36  0.743
2008 McCann A, Cotton JA, McInerney JO. The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods. Bmc Evolutionary Biology. 8: 312. PMID 19014489 DOI: 10.1186/1471-2148-8-312  0.818
2008 McInerney JO, Cotton JA, Pisani D. The prokaryotic tree of life: past, present... and future? Trends in Ecology & Evolution. 23: 276-81. PMID 18367290 DOI: 10.1016/J.Tree.2008.01.008  0.732
2008 O'Connell MJ, McInerney JO. Reconstructing the ancestral eukaryote: lessons from the past Ancestral Sequence Reconstruction. DOI: 10.1093/acprof:oso/9780199299188.003.0010  0.453
2007 McInerney JO, Pisani D. Genetics. Paradigm for life. Science (New York, N.Y.). 318: 1390-1. PMID 18048672 DOI: 10.1126/Science.1151657  0.617
2007 Keane TM, Naughton TJ, McInerney JO. MultiPhyl: A high-throughput phylogenomics webserver using distributed computing Nucleic Acids Research. 35: W33-W37. PMID 17553837 DOI: 10.1093/Nar/Gkm359  0.613
2007 Pisani D, Cotton JA, McInerney JO. Supertrees disentangle the chimerical origin of eukaryotic genomes. Molecular Biology and Evolution. 24: 1752-60. PMID 17504772 DOI: 10.1093/Molbev/Msm095  0.734
2007 Puigbò P, Garcia-Vallvé S, McInerney JO. TOPD/FMTS: A new software to compare phylogenetic trees Bioinformatics. 23: 1556-1558. PMID 17459965 DOI: 10.1093/Bioinformatics/Btm135  0.379
2007 Wilkinson M, McInerney JO, Hirt RP, Foster PG, Embley TM. Of clades and clans: terms for phylogenetic relationships in unrooted trees. Trends in Ecology & Evolution. 22: 114-5. PMID 17239486 DOI: 10.1016/J.Tree.2007.01.002  0.494
2006 O'Halloran DM, Fitzpatrick DA, McCormack GP, McInerney JO, Burnell AM. The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes. Journal of Molecular Evolution. 63: 87-94. PMID 16786439 DOI: 10.1007/S00239-005-0215-Z  0.548
2006 Pisani D, Mohun SM, Harris SR, McInerney JO, Wilkinson M. Molecular evidence for dim-light vision in the last common ancestor of the vertebrates. Current Biology : Cb. 16: R318-9; author reply. PMID 16682336 DOI: 10.1016/J.Cub.2006.03.090  0.615
2006 McInerney JO, Finnerty CS, Commins JM, Philip GK. Gene evolution and drug discovery. Methods in Molecular Biology (Clifton, N.J.). 316: 87-109. PMID 16671402 DOI: 10.1385/1-59259-964-8:87  0.754
2006 McInerney JO. On the desirability of models for inferring genome phylogenies [1] Trends in Microbiology. 14: 1-2. PMID 16271477 DOI: 10.1016/J.Tim.2005.10.006  0.466
2006 Fitzpatrick DA, Creevey CJ, McInerney JO. Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Molecular Biology and Evolution. 23: 74-85. PMID 16151187 DOI: 10.1093/Molbev/Msj009  0.774
2006 Keane TM, Page AJ, Naughton TJ, Travers SAA, McInerney JO. Building large phylogenetic trees on coarse-grained parallel machines Algorithmica (New York). 45: 285-300. DOI: 10.1007/S00453-006-1215-0  0.625
2005 McInerney JO, Wilkinson M. New methods ring changes for the tree of life. Trends in Ecology & Evolution. 20: 105-7. PMID 16701350 DOI: 10.1016/J.Tree.2005.01.007  0.613
2005 O'Connell MJ, McInerney JO. Gamma chain receptor interleukins: Evidence for positive selection driving the evolution of cell-to-cell communicators in the mammalian immune system Journal of Molecular Evolution. 61: 608-619. PMID 16205981 DOI: 10.1007/S00239-004-0313-3  0.549
2005 O'Connell MJ, McInerney JO. Adaptive evolution of the human fatty acid synthase gene: Support for the cancer selection and fat utilization hypotheses? Gene. 360: 151-159. PMID 16154299 DOI: 10.1016/J.Gene.2005.06.020  0.6
2005 Wilkinson M, Cotton JA, Creevey C, Eulenstein O, Harris SR, Lapointe FJ, Levasseur C, McInerney JO, Pisani D, Thorley JL. The shape of supertrees to come: tree shape related properties of fourteen supertree methods. Systematic Biology. 54: 419-31. PMID 16012108 DOI: 10.1080/10635150590949832  0.781
2005 Fitzpatrick DA, Creevey CJ, McInerney JO. Evidence of positive Darwinian selection in putative meningococcal vaccine antigens. Journal of Molecular Evolution. 61: 90-8. PMID 16007491 DOI: 10.1007/S00239-004-0290-6  0.676
2005 Fitzpatrick DA, McInerney JO. Evidence of positive Darwinian selection in Omp85, a highly conserved bacterial outer membrane protein essential for cell viability. Journal of Molecular Evolution. 60: 268-73. PMID 15785855 DOI: 10.1007/S00239-004-0194-5  0.501
2005 Philip GK, Creevey CJ, McInerney JO. The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Molecular Biology and Evolution. 22: 1175-84. PMID 15703245 DOI: 10.1093/Molbev/Msi102  0.813
2005 Travers SAA, O'Connell MJ, McCormack GP, McInerney JO. Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes Journal of Virology. 79: 1836-1841. PMID 15650207 DOI: 10.1128/Jvi.79.3.1836-1841.2005  0.552
2005 Keane TM, Naughton TJ, Travers SAA, McInerney JO, McCormack GP. DPRml: Distributed phylogeny reconstruction by maximum likelihood Bioinformatics. 21: 969-974. PMID 15513992 DOI: 10.1093/Bioinformatics/Bti100  0.575
2005 Creevey CJ, McInerney JO. Clann: investigating phylogenetic information through supertree analyses. Bioinformatics (Oxford, England). 21: 390-2. PMID 15374874 DOI: 10.1093/Bioinformatics/Bti020  0.601
2005 McInerney JO, Wilkinson M. New methods ring changes for the tree of life Trends in Ecology and Evolution. 20: 105-107. DOI: 10.1016/j.tree.2005.01.007  0.367
2005 Keane TM, Page AJ, McInerney JO, Naughton TJ. A high-throughput bioinformatics distributed computing platform Proceedings - Ieee Symposium On Computer-Based Medical Systems. 377-382.  0.441
2004 Creevey CJ, Fitzpatrick DA, Philip GK, Kinsella RJ, O'Connell MJ, Pentony MM, Travers SA, Wilkinson M, McInerney JO. Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proceedings. Biological Sciences / the Royal Society. 271: 2551-8. PMID 15615680 DOI: 10.1098/Rspb.2004.2864  0.799
2004 Travers SAA, Clewley JP, Glynn JR, Fine PEM, Crampin AC, Sibande F, Mulawa D, McInerney JO, McCormack GP. Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1 Journal of Virology. 78: 10501-10506. PMID 15367616 DOI: 10.1128/Jvi.78.19.10501-10506.2004  0.313
2004 Casey OM, Fitzpatrick R, McInerney JO, Morris DG, Powell R, Sreenan JM. Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs Biochimica Et Biophysica Acta - Gene Structure and Expression. 1679: 10-17. PMID 15245912 DOI: 10.1016/J.Bbaexp.2004.03.011  0.554
2004 Mahony S, McInerney JO, Smith TJ, Golden A. Gene prediction using the Self-Organizing Map: Automatic generation of multiple gene models Bmc Bioinformatics. 5. PMID 15070404 DOI: 10.1186/1471-2105-5-23  0.472
2003 Creevey CJ, McInerney JO. CRANN: detecting adaptive evolution in protein-coding DNA sequences. Bioinformatics (Oxford, England). 19: 1726. PMID 15593409 DOI: 10.1093/Bioinformatics/Btg225  0.635
2003 McInerney JO, Littlewood DT, Creevey CJ. Detecting adaptive molecular evolution: additional tools for the parasitologist. Advances in Parasitology. 54: 359-79. PMID 14711091 DOI: 10.1016/S0065-308X(03)54009-X  0.658
2003 Kinsella RJ, McInerney JO. Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations Trends in Genetics. 19: 687-689. PMID 14642748 DOI: 10.1016/J.Tig.2003.10.001  0.481
2003 Kinsella RJ, Fitzpatrick DA, Creevey CJ, McInerney JO. Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication. Proceedings of the National Academy of Sciences of the United States of America. 100: 10320-5. PMID 12917487 DOI: 10.1073/Pnas.1737230100  0.745
2003 Enright ME, McInerney JO, Griffin CT. Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov International Journal of Systematic and Evolutionary Microbiology. 53: 435-441. PMID 12710609 DOI: 10.1099/Ijs.0.02344-0  0.344
2003 Keane T, Allen R, Naughton TJ, McInerney J, Waldron J. Distributed Java platform with programmable MIMD capabilities Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2604: 122-131.  0.432
2002 Creevey CJ, McInerney JO. An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences. Gene. 300: 43-51. PMID 12468084 DOI: 10.1016/S0378-1119(02)01039-9  0.677
2002 McInerney JO. Bioinformatics in a post-genomics world - The need for an inclusive approach Pharmacogenomics Journal. 2: 207-208. PMID 12196909 DOI: 10.1038/Sj.Tpj.6500111  0.335
2002 McInerney JO, Mullarkey M, Wernecke ME, Powell R. Bacteria and Archaea: Molecular techniques reveal astonishing diversity Biodiversity. 3: 3-10. DOI: 10.1080/14888386.2002.9712571  0.566
2000 Murphy M, Harte T, McInerney J, Smith TJ. Molecular cloning of an Atlantic salmon nucleoside diphosphate kinase cDNA and its pattern of expression during embryogenesis Gene. 257: 139-148. PMID 11054576 DOI: 10.1016/S0378-1119(00)00374-7  0.373
2000 McCormack GP, Keegan BF, McInerney JO, Powell R. Re: Spectral analysis of echinoderm small subunit ribosomal RNA gene sequence data Molecular Phylogenetics and Evolution. 15: 327-329. PMID 10837162 DOI: 10.1006/Mpev.1999.0747  0.551
1999 Adams CL, McInerney JO, Kelly M. Indications of relationships between poriferan classes using full-length 18S rRNA gene sequences Memoirs of the Queensland Museum. 44: 33-43.  0.317
1999 McInerney JO, Adams CL, Kelly M, Borges KD. Phylogenetic resolution potential of 18S and 28S rRNA genes within the lithistid astrophorida Memoirs of the Queensland Museum. 44: 343-351.  0.33
1998 McInerney JO. Replicational and transcriptional selection on codon usage in Borrelia burgdorferi Proceedings of the National Academy of Sciences of the United States of America. 95: 10698-10703. PMID 9724767 DOI: 10.1073/Pnas.95.18.10698  0.496
1997 Mcinerney JO, Mullarkey M, Wernecke ME, Powell R. Phylogenetic analysis of Group I marine archaeal rRNA sequences emphasizes the hidden diversity within the primary group Archaea Proceedings of the Royal Society B: Biological Sciences. 264: 1663-1669. DOI: 10.1098/Rspb.1997.0231  0.58
1997 McINERNEY JO. Prokaryotic Genome Evolution as Assessed by Multivariate Analysis of Codon Usage Patterns Microbial & Comparative Genomics. 2: 89-97. DOI: 10.1089/Omi.1.1997.2.89  0.419
1997 McInerney JO. Codon usage patterns in Trichomonas vaginalis European Journal of Protistology. 33: 266-273. DOI: 10.1016/S0932-4739(97)80004-1  0.407
1995 Powell R, Mullarkey M, O'Brien D, McInerney JO. Detection of micro-organisms in the environment Biochemical Society Transactions. 23: 435-437. PMID 7672437  0.376
1995 Doyle LM, McInerney JO, Mooney J, Powell R, Haikara A, Moran AP. Sequence of the gene encoding the 16S rRNA of the beer spoilage organism Megasphaera cerevisiae Journal of Industrial Microbiology. 15: 67-70. PMID 7576462 DOI: 10.1007/BF01569801  0.517
1995 Hanley S, McInerney JO, Powell R. Sequence analysis and evolutionary aspects of piscine alpha-1-microglobulin/bikunin mRNA transcripts Molecular Marine Biology and Biotechnology. 4: 105-109. PMID 7539682  0.534
1995 McInerney JO, Wilkinson M, Patching JW, Embley TM, Powell R. Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder Applied and Environmental Microbiology. 61: 1646-1648. PMID 7538283 DOI: 10.1128/Aem.61.4.1646-1648.1995  0.807
1995 McInerney JO, Paskins L, Eardly D, Patching JW, Powell R. Extraction of prokaryotic genomic DNA from marine microbial communities suitable for amplification using the polymerase chain reaction Internationale Revue Der Gesamten Hydrobiologie. 80: 351-360. DOI: 10.1002/Iroh.19950800222  0.761
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