Peng-Yuan Yang, Ph.D. - Publications

Affiliations: 
Fudan university, Shanghai, Shanghai Shi, China 
Website:
http://www.chemistry.fudan.edu.cn/teacher.asp?tno=yangpengyu

273 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hu A, Wang Z, Xie J, Lin L, Yang P, Zhang L, Shen H, Cao YO. Fast and precise quantification of serum biomarkers and simultaneous recognition of multiple diseases enabled by a stable isotope-labelled peptides assisted high-throughput MRM strategy. The Analyst. PMID 32677633 DOI: 10.1039/D0An01100B  0.354
2020 Yang L, Zhang Q, Huang Y, Lin L, Schlüter H, Wang K, Zhang C, Yang P, Yu H. Boronic acid-functionalized mesoporous magnetic particles with a hydrophilic surface for the multimodal enrichment of glycopeptides for glycoproteomics. The Analyst. PMID 32617538 DOI: 10.1039/D0An00648C  0.337
2020 Cao W, Liu M, Kong S, Wu M, Zhang Y, Yang P. Recent advances in software tools for more generic and precise intact glycopeptide analysis. Molecular & Cellular Proteomics : McP. PMID 32611611 DOI: 10.1074/Mcp.R120.002090  0.32
2020 Xie J, Zhang L, Chen Z, Hu A, Liu S, Lu D, Xia Y, Qian J, Yang P, Shen H. Protein-protein correlations based variable dimension expansion algorithm for high efficient serum biomarker discovery. Analytica Chimica Acta. 1119: 25-34. PMID 32439051 DOI: 10.1016/J.Aca.2020.04.013  0.341
2020 Huang J, Jiang B, Zhao H, Wu M, Kong S, Liu M, Yang P, Cao W. Development of a Computational Tool for Automatic Interpretation of Intact O-Glycopeptide Tandem Mass Spectra from Single Proteins. Analytical Chemistry. PMID 32275135 DOI: 10.1021/Acs.Analchem.0C01091  0.332
2020 Yang Y, Liu X, Shen C, Lin Y, Yang P, Qiao L. In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics. Nature Communications. 11: 146. PMID 31919359 DOI: 10.1038/S41467-019-13866-Z  0.345
2020 Cao WQ, Liu MQ, Kong SY, Wu MX, Huang ZZ, Yang PY. Novel methods in glycomics: a 2019 update. Expert Review of Proteomics. 1-15. PMID 31914820 DOI: 10.1080/14789450.2020.1708199  0.303
2020 Huang Y, Zhang Q, Liu Y, Jiang B, Xie J, Gong T, Jia B, Liu X, Yao J, Cao W, Shen H, Yang P. Aperture-controllable nano-electrospray emitter and its application in cardiac proteome analysis. Talanta. 207: 120340. PMID 31594582 DOI: 10.1016/J.Talanta.2019.120340  0.354
2019 Hu Y, Zhang L, Chen J, Yao J, Jin H, Yang P. An outer membrane protease OmpT based strategy for simplified analysis of histone post-translational modifications by mass spectrometry. Analytical Chemistry. PMID 31775502 DOI: 10.1021/Acs.Analchem.9B02766  0.304
2019 Cao W, Jiang B, Huang J, Zhang L, Liu M, Yao J, Wu M, Zhang L, Kong S, Wang Y, Yang P. A straightforward and highly efficient strategy for hepatocellular carcinoma glycoprotein biomarker discovery using a nonglycopeptide-based mass spectrometry (NGP-MS) pipeline. Analytical Chemistry. PMID 31453685 DOI: 10.1021/Acs.Analchem.9B03074  0.328
2019 Huang YL, Wang J, Jiang YH, Yang PY, Wang GW, Liu F. Development of amphiphile 4-armed PEO-based Ti complex for highly selective enrichment of phosphopeptides. Talanta. 204: 670-676. PMID 31357351 DOI: 10.1016/J.Talanta.2019.06.008  0.359
2019 Jiang B, Huang J, Yu Z, Wu M, Liu M, Yao J, Zhao H, Yan G, Ying W, Cao W, Yang P. A multi-parallel N-glycopeptide enrichment strategy for high-throughput and in-depth mapping of the N-glycoproteome in metastatic human hepatocellular carcinoma cell lines. Talanta. 199: 254-261. PMID 30952254 DOI: 10.1016/J.Talanta.2019.02.010  0.322
2018 Chu B, He A, Tian Y, He W, Chen P, Hu J, Xu R, Zhou W, Zhang M, Yang P, Li SSC, Sun Y, Li P, Hunter T, Tian R. Photoaffinity-engineered protein scaffold for systematically exploring native phosphotyrosine signaling complexes in tumor samples. Proceedings of the National Academy of Sciences of the United States of America. PMID 30190427 DOI: 10.1073/Pnas.1805633115  0.347
2018 Yao Y, Ji J, Zhang H, Zhang K, Liu B, Yang P. Three-Dimensional Plasmonic Trap Array for Ultrasensitive Surface-Enhanced Raman Scattering Analysis of Single Cells. Analytical Chemistry. PMID 30075082 DOI: 10.1021/Acs.Analchem.8B02252  0.301
2018 Zhang Q, Huang Y, Jiang B, Hu Y, Xie J, Gao X, Jia B, Shen H, Zhang W, Yang P. In situ Synthesis of Magnetic Mesoporous Phenolic Resin for the Selective Enrichment of Glycopeptides. Analytical Chemistry. PMID 29851350 DOI: 10.1021/Acs.Analchem.8B00708  0.34
2018 Zhang X, Zhang Y, Fang C, Zhang L, Yang P, Wang C, Lu H. Ultra-deep palmitoylomics enabled by a dithiodipyridine functionalized magnetic nanoparticles. Analytical Chemistry. PMID 29660268 DOI: 10.1021/Acs.Analchem.8B00534  0.38
2018 Xue Y, Xie J, Fang P, Yao J, Yan G, Shen H, Yang P. Study on behaviors and performances of universal N-glycopeptide enrichment methods. The Analyst. PMID 29557479 DOI: 10.1039/C7An02062G  0.34
2018 Steffen P, Krisp C, Yi W, Yang P, Molloy MP, Schlueter H. Multi-laboratory analysis of the variability of shipped samples for proteomics following non-cooled international transport. Analytical Biochemistry. PMID 29486204 DOI: 10.1016/J.Ab.2018.02.026  0.365
2018 Jiang H, Yin H, Xie L, Zhang Y, Zhang L, Yang PY, Lu H. A novel triplex isobaric termini labeling quantitative approach for simultaneously supplying three quantitative sources. Analytica Chimica Acta. 1001: 70-77. PMID 29291808 DOI: 10.1016/J.Aca.2017.11.004  0.339
2017 Yang Y, Lin Y, Chen Z, Gong T, Yang P, Girault HH, Liu B, Qiao L. Bacterial Whole Cell Typing by Mass Spectra Pattern Matching with Bootstrapping Assessment. Analytical Chemistry. PMID 29086558 DOI: 10.1021/Acs.Analchem.7B03820  0.324
2017 Liu MQ, Zeng WF, Fang P, Cao WQ, Liu C, Yan GQ, Zhang Y, Peng C, Wu JQ, Zhang XJ, Tu HJ, Chi H, Sun RX, Cao Y, Dong MQ, ... ... Yang PY, et al. pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification. Nature Communications. 8: 438. PMID 28874712 DOI: 10.1038/S41467-017-00535-2  0.338
2017 Liu S, Xia Y, Liu X, Wang Y, Chen Z, Xie J, Qian J, Shen H, Yang P. In-depth proteomic profiling of left ventricular tissues in human end-stage dilated cardiomyopathy. Oncotarget. PMID 28427148 DOI: 10.18632/Oncotarget.15689  0.339
2017 Lu W, Liu X, Liu S, Cao W, Zhang Y, Yang P. Locus-specific Retention Predictor (LsRP): A Peptide Retention Time Predictor Developed for Precision Proteomics. Scientific Reports. 7: 43959. PMID 28303880 DOI: 10.1038/Srep43959  0.355
2017 Chen W, Adhikari S, Chen L, Lin L, Li H, Luo S, Yang P, Tian R. 3D-SISPROT: A simple and integrated spintip-based protein digestion and three-dimensional peptide fractionation technology for deep proteome profiling. Journal of Chromatography. A. PMID 28126229 DOI: 10.1016/J.Chroma.2017.01.033  0.393
2017 Yan L, Qiao L, Ji J, Li Y, Yin X, Lin L, Liu X, Yao J, Wang Y, Liu B, Qian K, Liu B, Yang P. In-tip nanoreactors for cancer cells proteome profiling. Analytica Chimica Acta. 949: 43-52. PMID 27876144 DOI: 10.1016/J.Aca.2016.11.021  0.401
2016 Zhu Y, Qiao L, Prudent M, Bondarenko A, Gasilova N, Möller SB, Lion N, Pick H, Gong T, Chen Z, Yang P, Lovey LT, Girault HH. Sensitive and fast identification of bacteria in blood samples by immunoaffinity mass spectrometry for quick BSI diagnosis. Chemical Science. 7: 2987-2995. PMID 29997787 DOI: 10.1039/C5Sc04919A  0.328
2016 Liao R, Zheng D, Nie A, Zhou S, Deng H, Gao Y, Yang P, Yu Y, Tan L, Qi W, Wu J, Li E, Yi W. Sensitive and Precise Characterization of Combinatorial Histone Modifications by Selective Derivatization Coupled with RPLC-EThcD-MS/MS. Journal of Proteome Research. PMID 28034318 DOI: 10.1021/Acs.Jproteome.6B00788  0.356
2016 Bian X, Lan Y, Wang B, Zhang YS, Liu B, Yang P, Zhang W, Qiao L. Microfluidic Air Sampler for Highly Efficient Bacterial Aerosol Collection and Identification. Analytical Chemistry. 88: 11504-11512. PMID 27934096 DOI: 10.1021/Acs.Analchem.6B02708  0.301
2016 Wang J, Li J, Wang Y, Gao M, Zhang X, Yang P. Development of Versatile Metal-Organic Framework Functionalized Magnetic Graphene Core-Shell Biocomposite for Highly Specifically Recognizing Glycopeptides. Acs Applied Materials & Interfaces. PMID 27681085 DOI: 10.1021/Acsami.6B08218  0.328
2016 Van Eyk JE, Corrales FJ, Aebersold R, Cerciello F, Deutsch EW, Roncada P, Sanchez JC, Yamamoto T, Yang P, Zhang H, Omenn GS. Highlights of the Biology and Disease-driven Human Proteome Project, 2015-2016. Journal of Proteome Research. 15: 3979-3987. PMID 27573249 DOI: 10.1021/Acs.Jproteome.6B00444  0.321
2016 Jia B, Zhang S, Yan L, He S, Liu B, Shen H, Yang P. Self-aspiration sampling extractive electrospray ionization mass spectrometry (EESI-MS) for high-throughput analysis of liquid samples. Rapid Communications in Mass Spectrometry : Rcm. 30: 56-61. PMID 27539416 DOI: 10.1002/Rcm.7616  0.335
2016 Cao W, Huang J, Jiang B, Gao X, Yang P. Highly Selective Enrichment of Glycopeptides Based on Zwitterionically Functionalized Soluble Nanopolymers. Scientific Reports. 6: 29776. PMID 27412817 DOI: 10.1038/Srep29776  0.369
2016 Wang J, Wang Y, Gao M, Zhang X, Yang P. Versatile metal-organic framework-functionalized magnetic graphene nanoporous composites: As deft matrix for high-effective extraction and purification of the N-linked glycans. Analytica Chimica Acta. 932: 41-8. PMID 27286768 DOI: 10.1016/J.Aca.2016.05.023  0.332
2016 Zeng WF, Liu MQ, Zhang Y, Wu JQ, Fang P, Peng C, Nie A, Yan G, Cao W, Liu C, Chi H, Sun RX, Wong CC, He SM, Yang P. pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3. Scientific Reports. 6: 25102. PMID 27139140 DOI: 10.1038/Srep25102  0.338
2016 Chen W, Wang S, Adhikari S, Deng Z, Wang L, Chen L, Ke M, Yang P, Tian R. Simple and Integrated Spintip-based Technology Applied for Deep Proteome Profiling. Analytical Chemistry. PMID 27062885 DOI: 10.1021/Acs.Analchem.6B00631  0.411
2016 Ji J, Nie L, Liao L, Du R, Liu B, Yang P. Ambient ionization based on mesoporous graphene coated paper for therapeutic drug monitoring. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1015: 142-149. PMID 26922000 DOI: 10.1016/J.Jchromb.2016.01.040  0.315
2016 Fang C, Zhang X, Zhang L, Gao X, Yang P, Lu H. Identification of palmitoylated transitional endoplasmic reticulum ATPase by proteomic technique and pan anti-palmitoylation antibody. Journal of Proteome Research. PMID 26865113 DOI: 10.1021/Acs.Jproteome.5B00979  0.353
2016 Wang J, Wang Y, Gao M, Zhang X, Yang P. Facile synthesis of hydrophilic polyamidoxime polymers as a novel solid-phase extraction matrix for sequential characterization of glyco- and phosphoproteomes. Analytica Chimica Acta. 907: 69-76. PMID 26803004 DOI: 10.1016/J.Aca.2015.12.015  0.32
2016 Lu H, Zhang Y, Yang P. Advancements in mass spectrometry-based glycoproteomics and glycomics National Science Review. 3: 345-364. DOI: 10.1093/Nsr/Nww019  0.358
2016 Gu HW, Wu HL, Li SS, Yin XL, Hu Y, Xia H, Fang H, Yu RQ, Yang PY, Lu HJ. Chemometrics-enhanced full scan mode of liquid chromatography-mass spectrometry for the simultaneous determination of six co-eluted sulfonylurea-type oral antidiabetic agents in complex samples Chemometrics and Intelligent Laboratory Systems. 155: 62-72. DOI: 10.1016/J.Chemolab.2016.04.001  0.328
2015 Xu L, Wang F, Xu Y, Wang Y, Zhang C, Qin X, Yu H, Yang P. An MRM-based workflow for absolute quantitation of lysine-acetylated metabolic enzymes in mouse liver. The Analyst. PMID 26524672 DOI: 10.1039/C5An01832C  0.346
2015 Ito H, Kaji H, Togayachi A, Azadi P, Ishihara M, Geyer R, Galuska C, Geyer H, Kakehi K, Kinoshita M, Karlsson NG, Jin C, Kato K, Yagi H, Kondo S, ... ... Yang P, et al. Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycoconjugate Journal. PMID 26511985 DOI: 10.1007/S10719-015-9625-3  0.347
2015 Li H, Wang Y, Zhang L, Lu H, Zhou Z, Wei L, Yang P. Facile synthesis of novel magnetic silica nanoparticles functionalized with layer-by-layer detonation nanodiamonds for secretome study. The Analyst. PMID 26468487 DOI: 10.1039/C5An01432H  0.348
2015 Fang P, Liu M, Xue Y, Yao J, Zhang Y, Shen H, Yang P. Controlling nonspecific trypsin cleavages in LC-MS/MS-based shotgun proteomics using optimized experimental conditions. The Analyst. PMID 26418741 DOI: 10.1039/C5An01505G  0.407
2015 Liu M, Fang C, Pan X, Jiang H, Zhang L, Zhang L, Zhang Y, Yang P, Lu H. Positive enrichment of C-terminal peptides using oxazolone chemistry and biotinylation. Analytical Chemistry. PMID 26356223 DOI: 10.1021/Acs.Analchem.5B02437  0.324
2015 Xie LQ, Zhang L, Nie AY, Yan GQ, Yao J, Zhang Y, Yang PY, Lu HJ. ITMSQ: A software tool for N- and C-terminal fragment ion pairs based isobaric tandem mass spectrometry quantification. Proteomics. PMID 26349451 DOI: 10.1002/Pmic.201400513  0.363
2015 Qiao J, Fang CY, Chen SX, Wang XQ, Cui SJ, Liu XH, Jiang YH, Wang J, Zhang Y, Yang PY, Liu F. Stroma derived COL6A3 is a potential prognosis marker of colorectal carcinoma revealed by quantitative proteomics. Oncotarget. PMID 26338966 DOI: 10.18632/Oncotarget.4966  0.329
2015 Chen J, Gao J, Peng M, Wang Y, Yu Y, Yang P, Jin H. In-gel NHS-propionate derivatization for histone post-translational modifications analysis in Arabidopsis thaliana. Analytica Chimica Acta. 886: 107-13. PMID 26320642 DOI: 10.1016/J.Aca.2015.06.019  0.306
2015 Fang X, Qiao L, Yan G, Yang P, Liu B. Multifunctional Nanoreactor for Comprehensive Characterization of Membrane Proteins Based on Surface Functionalized Mesoporous Foams. Analytical Chemistry. 87: 9360-7. PMID 26305297 DOI: 10.1021/Acs.Analchem.5B02135  0.374
2015 Zhang Y, Li Q, Wu F, Zhou R, Qi Y, Su N, Chen L, Xu S, Jiang T, Zhang C, Cheng G, Chen X, Kong D, Wang Y, Zhang T, ... ... Yang P, et al. The Tissue-Based Proteogenomics Reveals that Human Testis Endows Plentiful Missing Proteins. Journal of Proteome Research. PMID 26282447 DOI: 10.1021/Acs.Jproteome.5B00435  0.331
2015 Zhang Y, Zhang C, Jiang H, Yang P, Lu H. Fishing the PTM proteome with chemical approaches using functional solid phases. Chemical Society Reviews. PMID 26258179 DOI: 10.1039/C4Cs00529E  0.332
2015 Cao W, Zhang W, Huang J, Jiang B, Zhang L, Yang P. Glycan reducing end dual isotopic labeling (GREDIL) for mass spectrometry-based quantitative N-glycomics. Chemical Communications (Cambridge, England). PMID 26240031 DOI: 10.1039/C5Cc05365J  0.306
2015 Yang L, Lian X, Zhang W, Guo J, Wang Q, Li Y, Chen Y, Yin X, Yang P, Lan F, He QY, Zhang G, Wang T. Finding missing proteins from the epigenetically manipulated human cell with stringent quality criteria. Journal of Proteome Research. PMID 26202631 DOI: 10.1021/Acs.Jproteome.5B00480  0.38
2015 Yin X, Zhang Y, Guo S, Jin H, Wang W, Yang P. Large scale systematic proteomic quantification from non-metastatic to metastatic colorectal cancer. Scientific Reports. 5: 12120. PMID 26175278 DOI: 10.1038/Srep12120  0.35
2015 Wang J, Wang Y, Gao M, Zhang X, Yang P. Multilayer Hydrophilic Poly(phenol-formaldehyde resin)-Coated Magnetic Graphene for Boronic Acid Immobilization as a Novel Matrix for Glycoproteome Analysis. Acs Applied Materials & Interfaces. 7: 16011-7. PMID 26161682 DOI: 10.1021/Acsami.5B04295  0.301
2015 Su N, Zhang C, Zhang Y, Wang Z, Fan F, Zhao M, Wu F, Gao Y, Li Y, Chen L, Tian M, Zhang T, Wen B, Sensang N, Xiong Z, ... ... Yang P, et al. Special Enrichment Strategies Greatly Increase the Efficiency of Missing Proteins Identification from Regular Proteome Samples. Journal of Proteome Research. PMID 26144840 DOI: 10.1021/Acs.Jproteome.5B00481  0.38
2015 Gu HW, Wu HL, Yin XL, Li SS, Liu YJ, Xia H, Xie LX, Yu RQ, Yang PY, Lu HJ. Solving signal instability to maintain the second-order advantage in the resolution and determination of multi-analytes in complex systems by modeling liquid chromatography-mass spectrometry data using alternating trilinear decomposition method assisted with piecewise direct standardization. Journal of Chromatography. A. PMID 26141270 DOI: 10.1016/J.Chroma.2015.06.049  0.336
2015 Xu L, Chen J, Gao J, Yu H, Yang P. Crosstalk of homocysteinylation, methylation and acetylation on histone H3. The Analyst. 140: 3057-63. PMID 25807213 DOI: 10.1039/C4An02355B  0.314
2015 Sun H, Chen C, Lian B, Zhang M, Wang X, Zhang B, Li Y, Yang P, Xie L. Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data. Journal of Proteome Research. 14: 1678-86. PMID 25698088 DOI: 10.1021/Pr500944C  0.323
2015 Yin X, Zhang Y, Liu X, Chen C, Lu H, Shen H, Yang P. Systematic comparison between SDS-PAGE/RPLC and high-/low-pH RPLC coupled tandem mass spectrometry strategies in a whole proteome analysis. The Analyst. 140: 1314-22. PMID 25574523 DOI: 10.1039/C4An02119C  0.367
2015 Li H, Shen H, Yan G, Zhang Y, Liu M, Fang P, Yu H, Yang P. Site-specific structural characterization of O-glycosylation and identification of phosphorylation sites of recombinant osteopontin. Biochimica Et Biophysica Acta. 1854: 581-91. PMID 25450502 DOI: 10.1016/J.Bbapap.2014.09.025  0.319
2015 Jiao J, Zhang Y, Yang P, Lu H. Hydrazinonicotinic acid as a novel matrix for highly sensitive and selective MALDI-MS analysis of oligosaccharides. The Analyst. 140: 156-61. PMID 25360446 DOI: 10.1039/C4An01659A  0.372
2015 Li Y, Yan L, Liu Y, Qian K, Liu B, Yang P, Liu B. High-efficiency nano/micro-reactors for protein analysis Rsc Advances. 5: 1331-1342. DOI: 10.1039/C4Ra12333F  0.333
2015 Wang Z, Zhang J, Zhang G, Qiu D, Yang P. Direct determination of trace impurities in high-purity silicon nitride by axial viewed inductively coupled plasma optical emission spectrometry using a slurry nebulization technique Journal of Analytical Atomic Spectrometry. 30: 909-915. DOI: 10.1039/C4Ja00429A  0.302
2014 Yan Y, Deng C, Zheng Z, Zhang X, Yang P. Synthesis of Polyboronic Acid Functionalized Hierarchically Ordered Macro-/Mesoporous Silica for Selective Enrichment of Glycopeptides for Mass Spectrometric Analysis. Chempluschem. 79: 31-34. PMID 31986751 DOI: 10.1002/Cplu.201300335  0.315
2014 Chen SX, Xu XE, Wang XQ, Cui SJ, Xu LL, Jiang YH, Zhang Y, Yan HB, Zhang Q, Qiao J, Yang PY, Liu F. Data from a proteomic analysis of colonic fibroblasts secretomes. Data in Brief. 1: 19-24. PMID 26217680 DOI: 10.1016/J.Dib.2014.08.003  0.303
2014 Sun H, Chen C, Shi M, Wang D, Liu M, Li D, Yang P, Li Y, Xie L. Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs. Proteomics. 14: 2760-8. PMID 25339270 DOI: 10.1002/Pmic.201400174  0.336
2014 Gu HW, Wu HL, Yin XL, Li Y, Liu YJ, Xia H, Zhang SR, Jin YF, Sun XD, Yu RQ, Yang PY, Lu HJ. Multi-targeted interference-free determination of ten β-blockers in human urine and plasma samples by alternating trilinear decomposition algorithm-assisted liquid chromatography-mass spectrometry in full scan mode: comparison with multiple reaction monitoring. Analytica Chimica Acta. 848: 10-24. PMID 25263112 DOI: 10.1016/J.Aca.2014.08.052  0.346
2014 Chen SX, Xu XE, Wang XQ, Cui SJ, Xu LL, Jiang YH, Zhang Y, Yan HB, Zhang Q, Qiao J, Yang PY, Liu F. Identification of colonic fibroblast secretomes reveals secretory factors regulating colon cancer cell proliferation. Journal of Proteomics. 110: 155-71. PMID 25118038 DOI: 10.1016/J.Jprot.2014.07.031  0.328
2014 Yin X, Liu X, Zhang Y, Yan G, Wang F, Lu H, Shen H, Yang P. Rapid and sensitive profiling and quantification of the human cell line proteome by LC-MS/MS without prefractionation. Proteomics. 14: 2008-16. PMID 25044409 DOI: 10.1002/Pmic.201300510  0.374
2014 Xie LQ, Nie AY, Yang SJ, Zhao C, Zhang L, Yang PY, Lu HJ. Global in vivo terminal amino acid labeling for exploring differential expressed proteins induced by dialyzed serum cultivation. The Analyst. 139: 4497-504. PMID 25028700 DOI: 10.1039/C4An00728J  0.346
2014 Zhang Y, Jiao J, Yang P, Lu H. Mass spectrometry-based N-glycoproteomics for cancer biomarker discovery. Clinical Proteomics. 11: 18. PMID 24872809 DOI: 10.1186/1559-0275-11-18  0.384
2014 Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P. Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis. Journal of Proteome Research. 13: 3121-9. PMID 24766575 DOI: 10.1021/Pr500238V  0.335
2014 Shi C, Deng C, Li Y, Zhang X, Yang P. Hydrophilic polydopamine-coated magnetic graphene nanocomposites for highly efficient tryptic immobilization. Proteomics. 14: 1457-63. PMID 24723515 DOI: 10.1002/Pmic.201300487  0.34
2014 Chen C, Liu X, Zheng W, Zhang L, Yao J, Yang P. Screening of missing proteins in the human liver proteome by improved MRM-approach-based targeted proteomics. Journal of Proteome Research. 13: 1969-78. PMID 24597967 DOI: 10.1021/Pr4010986  0.404
2014 Ma K, Jin H, Hu R, Xiong Y, Zhou S, Ting P, Cheng Y, Yang Y, Yang P, Li X. A proteomic analysis of placental trophoblastic cells in preeclampsia-eclampsia. Cell Biochemistry and Biophysics. 69: 247-58. PMID 24343450 DOI: 10.1007/S12013-013-9792-4  0.357
2014 Liu Y, Ying W, Ren Z, Gu W, Zhang Y, Yan G, Yang P, Liu Y, Yin X, Chang C, Jiang J, Fan F, Zhang C, Xu P, Wang Q, et al. Chromosome-8-coded proteome of Chinese Chromosome Proteome Data set (CCPD) 2.0 with partial immunohistochemical verifications. Journal of Proteome Research. 13: 126-36. PMID 24328083 DOI: 10.1021/Pr400902U  0.314
2014 Yan Y, Zheng Z, Deng C, Zhang X, Yang P. Selective enrichment of phosphopeptides by titania nanoparticles coated magnetic carbon nanotubes. Talanta. 118: 14-20. PMID 24274265 DOI: 10.1016/J.Talanta.2013.09.036  0.356
2014 Zhang C, Li N, Zhai L, Xu S, Liu X, Cui Y, Ma J, Han M, Jiang J, Yang C, Fan F, Li L, Qin P, Yu Q, Chang C, ... ... Yang P, et al. Systematic analysis of missing proteins provides clues to help define all of the protein-coding genes on human chromosome 1. Journal of Proteome Research. 13: 114-25. PMID 24256544 DOI: 10.1021/Pr400900J  0.342
2014 Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, ... ... Yang P, et al. Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP. Journal of Proteome Research. 13: 38-49. PMID 24256510 DOI: 10.1021/Pr4009018  0.375
2014 Liu H, Yao J, Yang P, Fan H. Analysis of Rat Liver Proteins by Peptide Immobilized pH Gradient Isoelectric Focusing Combined with Liquid Chromatography-Tandem Mass Spectrometry Chinese Journal of Analytical Chemistry. 42: 203-208. DOI: 10.1016/S1872-2040(13)60710-0  0.418
2014 Lu W, Yin X, Liu X, Yan G, Yang P. Response of peptide intensity to concentration in ESI-MS-based proteome Science China Chemistry. 57: 686-694. DOI: 10.1007/S11426-014-5096-9  0.353
2014 Wan D, Chen Q, Gao M, Zhang X, Yang P. Combination of extraction tip and MALDI-TOF-MS for efficient separation and analysis of cysteine-containing peptides Science China Chemistry. 57: 703-707. DOI: 10.1007/S11426-014-5084-0  0.339
2013 Zou X, Feng B, Dong T, Yan G, Tan B, Shen H, Huang A, Zhang X, Zhang M, Yang P, Zheng M, Zhang Y. Up-regulation of type I collagen during tumorigenesis of colorectal cancer revealed by quantitative proteomic analysis. Journal of Proteomics. 94: 473-85. PMID 24332065 DOI: 10.1016/J.Jprot.2013.10.020  0.312
2013 Wang H, Li H, Zhang W, Wei L, Yu H, Yang P. Multiplex profiling of glycoproteins using a novel bead-based lectin array. Proteomics. 14: 78-86. PMID 24243643 DOI: 10.1002/Pmic.201200544  0.313
2013 Zhao M, Deng C, Zhang X, Yang P. Facile synthesis of magnetic metal organic frameworks for the enrichment of low-abundance peptides for MALDI-TOF MS analysis. Proteomics. 13: 3387-92. PMID 24150872 DOI: 10.1002/Pmic.201300131  0.339
2013 Liu M, Zhang L, Zhang L, Yao J, Yang P, Lu H. Approach for identification and quantification of C-terminal peptides: incorporation of isotopic arginine labeling based on oxazolone chemistry. Analytical Chemistry. 85: 10745-53. PMID 24147625 DOI: 10.1021/Ac401647M  0.326
2013 Yao F, Li Y, Yang P, Liu Y, Fan H. Detection and quantification of lysine acetyl-alteration using antibody microarray Bioanalysis. 5: 2469-2480. PMID 24138621 DOI: 10.4155/Bio.13.191  0.351
2013 Gan J, Qian K, Wan J, Qiao L, Guo W, Yang P, Girault HH, Liu B. Amino-functionalized macroporous silica for efficient tryptic digestion in acidic solutions. Proteomics. 13: 3117-23. PMID 24106208 DOI: 10.1002/Pmic.201300108  0.334
2013 Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P. Discovery and Confirmation of O-GlcNAcylated Proteins in Rat Liver Mitochondria by Combination of Mass Spectrometry and Immunological Methods Plos One. 8. PMID 24098488 DOI: 10.1371/Journal.Pone.0076399  0.32
2013 Ji J, Nie L, Li Y, Yang P, Liu B. Simultaneous online enrichment and identification of trace species based on microfluidic droplets. Analytical Chemistry. 85: 9617-22. PMID 24032421 DOI: 10.1021/Ac4018082  0.341
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2009 Song P, Bao H, Yu Y, Xue Y, Yun D, Zhang Y, He Y, Liu Y, Liu Q, Lu H, Fan H, Luo J, Yang P, Chen X. Comprehensive profiling of metastasis-related proteins in paired hepatocellular carcinoma cells with different metastasis potentials. Proteomics. Clinical Applications. 3: 841-52. PMID 21136991 DOI: 10.1002/Prca.200780131  0.351
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2008 Jin H, Ma KD, Hu R, Chen Y, Yang F, Yao J, Li XT, Yang PY. Analysis of expression and comparative profile of normal placental tissue proteins and those in preeclampsia patients using proteomic approaches. Analytica Chimica Acta. 629: 158-64. PMID 18940332 DOI: 10.1016/J.Aca.2008.09.015  0.385
2008 Wang S, Wei B, Yang P, Chen G. Alternating current-assisted on-plate proteolysis for MALDI-TOF MS peptide mapping. Proteomics. 8: 4637-4641. PMID 18924112 DOI: 10.1002/Pmic.200800401  0.363
2008 Xu Y, Zhang L, Lu H, Yang P. Mass spectrometry analysis of phosphopeptides after peptide carboxy group derivatization. Analytical Chemistry. 80: 8324-8328. PMID 18821779 DOI: 10.1021/Ac801220C  0.343
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2008 Gao M, Yu W, Zhang Y, Yan G, Deng C, Yang P, Zhang X. Integrated strong cation exchange/capillary reversed-phase liquid chromatography/on-target digestion coupled with mass spectrometry for identification of intact human liver tissue proteins. The Analyst. 133: 1261-7. PMID 18709205 DOI: 10.1039/B803388A  0.398
2008 Shen W, Xiong H, Xu Y, Cai S, Lu H, Yang P. ZnO-poly(methyl methacrylate) nanobeads for enriching and desalting low-abundant proteins followed by directly MALDI-TOF MS analysis. Analytical Chemistry. 80: 6758-63. PMID 18681459 DOI: 10.1021/Ac801001B  0.376
2008 Chen H, Xu X, Yao N, Deng C, Yang P, Zhang X. Facile synthesis of C8-functionalized magnetic silica microspheres for enrichment of low-concentration peptides for direct MALDI-TOF MS analysis. Proteomics. 8: 2778-84. PMID 18655046 DOI: 10.1002/Pmic.200700892  0.35
2008 Lu H, Zong C, Wang Y, Young GW, Deng N, Souda P, Li X, Whitelegge J, Drews O, Yang PY, Ping P. Revealing the dynamics of the 20 S proteasome phosphoproteome: a combined CID and electron transfer dissociation approach. Molecular & Cellular Proteomics : McP. 7: 2073-89. PMID 18579562 DOI: 10.1074/Mcp.M800064-Mcp200  0.301
2008 Xue Y, Yun D, Esmon A, Zou P, Zuo S, Yu Y, He F, Yang P, Chen X. Proteomic dissection of agonist-specific TLR-mediated inflammatory responses on macrophages at subcellular resolution. Journal of Proteome Research. 7: 3180-93. PMID 18572962 DOI: 10.1021/Pr800021A  0.309
2008 Wang S, Bao H, Zhang L, Yang P, Chen G. Infrared-Assisted On-Plate Proteolysis for MALDI-TOF-MS Peptide Mapping Analytical Chemistry. 80: 5640-5647. PMID 18553945 DOI: 10.1021/Ac800349U  0.38
2008 Wang S, Zhang L, Yang P, Chen G. Infrared‐assisted tryptic proteolysis for peptide mapping Proteomics. 8: 2579-2582. PMID 18546161 DOI: 10.1002/Pmic.200800086  0.377
2008 Li Y, Xu X, Qi D, Deng C, Yang P, Zhang X. Novel Fe3O4@TiO2 core-shell microspheres for selective enrichment of phosphopeptides in phosphoproteome analysis. Journal of Proteome Research. 7: 2526-38. PMID 18473453 DOI: 10.1021/Pr700582Z  0.357
2008 Zhong H, Yun D, Zhang C, Yang P, Fan H, He F. Comprehensive proteome analysis of mouse liver by ampholyte-free liquid-phase isoelectric focusing. Electrophoresis. 29: 2372-80. PMID 18446803 DOI: 10.1002/Elps.200700654  0.393
2008 Wang S, Chen Z, Yang P, Chen G. Trypsin-immobilized fiber core in syringe needle for highly efficient proteolysis. Proteomics. 8: 1785-1788. PMID 18442168 DOI: 10.1002/Pmic.200701042  0.309
2008 Lin S, Yao G, Qi D, Li Y, Deng C, Yang P, Zhang X. Fast and efficient proteolysis by microwave-assisted protein digestion using trypsin-immobilized magnetic silica microspheres. Analytical Chemistry. 80: 3655-3665. PMID 18407620 DOI: 10.1021/Ac800023R  0.406
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2008 Gao M, Deng C, Yu W, Zhang Y, Yang P, Zhang X. Large scale depletion of the high-abundance proteins and analysis of middle- and low-abundance proteins in human liver proteome by multidimensional liquid chromatography. Proteomics. 8: 939-47. PMID 18324721 DOI: 10.1002/Pmic.200600099  0.397
2008 Li Y, Qi D, Deng C, Yang P, Zhang X. Cerium ion-chelated magnetic silica microspheres for enrichment and direct determination of phosphopeptides by matrix-assisted laser desorption ionization mass spectrometry. Journal of Proteome Research. 7: 1767-77. PMID 18307297 DOI: 10.1021/Pr070385L  0.309
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2008 Li Y, Wu J, Qi D, Xu X, Deng C, Yang P, Zhang X. Novel approach for the synthesis of Fe3O4@TiO2 core-shell microspheres and their application to the highly specific capture of phosphopeptides for MALDI-TOF MS analysis. Chemical Communications (Cambridge, England). 564-6. PMID 18209790 DOI: 10.1039/B716055K  0.323
2008 Li Y, Lin H, Deng C, Yang P, Zhang X. Highly selective and rapid enrichment of phosphorylated peptides using gallium oxide-coated magnetic microspheres for MALDI-TOF-MS and nano-LC-ESI-MS/MS/MS analysis. Proteomics. 8: 238-49. PMID 18081192 DOI: 10.1002/Pmic.200700454  0.312
2008 Dai Z, Fan J, Liu Y, Zhou J, Bai D, Tan C, Guo K, Zhang Y, Zhao Y, Yang P. Identification and analysis of alpha1,6-fucosylated proteins in human normal liver tissues by a target glycoproteomic approach. Electrophoresis. 28: 4382-91. PMID 18041034 DOI: 10.1002/Elps.200700233  0.333
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2008 Liang S, Xu X, Lu H, Yang P. Development of Deuterated-Leucine Labeling with Immunoprecipitation to Analyze Cellular Protein Complex Journal of Proteomics & Bioinformatics. 1: 293-301. DOI: 10.4172/Jpb.1000037  0.338
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2007 Lin S, Lin Z, Yao G, Deng C, Yang P, Zhang X. Development of microwave-assisted protein digestion based on trypsin-immobilized magnetic microspheres for highly efficient proteolysis followed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis. Rapid Communications in Mass Spectrometry : Rcm. 21: 3910-8. PMID 17990248 DOI: 10.1002/Rcm.3283  0.401
2007 He YF, Liu YK, Lu HJ, Chen J, Yang PY. Comparative proteomic analysis of primary mouse liver c-Kit-(CD45/TER119)- stem/progenitor cells. Journal of Cellular Biochemistry. 102: 936-46. PMID 17907156 DOI: 10.1002/Jcb.21271  0.304
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2007 Li Y, Xu X, Deng C, Yang P, Zhang X. Immobilization of trypsin on superparamagnetic nanoparticles for rapid and effective proteolysis. Journal of Proteome Research. 6: 3849-55. PMID 17676785 DOI: 10.1021/Pr070132S  0.303
2007 Xu Z, Zhou X, Lu H, Wu N, Zhao H, Zhang L, Zhang W, Liang YL, Wang L, Liu Y, Yang P, Zha X. Comparative glycoproteomics based on lectins affinity capture of N-linked glycoproteins from human Chang liver cells and MHCC97-H cells. Proteomics. 7: 2358-70. PMID 17623300 DOI: 10.1002/Pmic.200600041  0.311
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2007 Li Y, Yan B, Xu X, Deng C, Yang P, Shen X, Zhang X. On-column tryptic mapping of proteins using metal-ion-chelated magnetic silica microspheres by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 21: 2263-8. PMID 17577873 DOI: 10.1002/Rcm.3073  0.355
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2007 Shan Z, Han L, Yuan M, Deng C, Zhao D, Tu B, Yang P. Mesoporous tungsten titanate as matrix for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of biomolecules. Analytica Chimica Acta. 593: 13-9. PMID 17531819 DOI: 10.1016/J.Aca.2007.04.045  0.32
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2001 Song H, Yue G, Zhou Z, Xie Y, Yang P, Mao Y, Xu Y, Wang H. Identification of a new gene product of PKIβ by HPLC–ESIMS Fresenius Journal of Analytical Chemistry. 370: 1003-1008. PMID 11583078 DOI: 10.1007/S002160100840  0.301
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