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Christian Diener - Publications

Affiliations: 
2018- Institute for Systems Biology, Seattle, WA, United States 
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Diener C, Gibbons SM. Metagenomic estimation of dietary intake from human stool. Biorxiv : the Preprint Server For Biology. PMID 38370672 DOI: 10.1101/2024.02.02.578701  0.604
2023 Marcelino VR, Welsh C, Diener C, Gulliver EL, Rutten EL, Young RB, Giles EM, Gibbons SM, Greening C, Forster SC. Disease-specific loss of microbial cross-feeding interactions in the human gut. Nature Communications. 14: 6546. PMID 37863966 DOI: 10.1038/s41467-023-42112-w  0.654
2023 Happel AU, Rametse L, Perumaul B, Diener C, Gibbons SM, Nyangahu DD, Donald KA, Gray C, Jaspan HB. Bifidobacterium infantis supplementation versus placebo in early life to improve immunity in infants exposed to HIV: a protocol for a randomized trial. Bmc Complementary Medicine and Therapies. 23: 367. PMID 37853370 DOI: 10.1186/s12906-023-04208-0  0.544
2023 Lim JJ, Diener C, Wilson J, Valenzuela JJ, Baliga NS, Gibbons SM. Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes. Nature Communications. 14: 5682. PMID 37709733 DOI: 10.1038/s41467-023-41424-1  0.607
2023 Sarmiento KR, Carr A, Diener C, Locey KJ, Gibbons SM. Island biogeography theory and the gut: why taller people tend to harbor more diverse gut microbiomes. Biorxiv : the Preprint Server For Biology. PMID 37609334 DOI: 10.1101/2023.08.08.552554  0.747
2023 Diener C, Gibbons SM. Coarse graining the human gut microbiome. Cell Host & Microbe. 31: 1076-1078. PMID 37442093 DOI: 10.1016/j.chom.2023.06.001  0.63
2023 Carr A, Baliga NS, Diener C, Gibbons SM. Personalized engraftment risk prediction and probiotic therapy assessment in the human gut. Biorxiv : the Preprint Server For Biology. PMID 37162960 DOI: 10.1101/2023.04.28.538771  0.779
2023 Johnson JP, Diener C, Levine AE, Wilmanski T, Suskind DL, Ralevski A, Hadlock J, Magis AT, Hood L, Rappaport N, Gibbons SM. Generally-healthy individuals with aberrant bowel movement frequencies show enrichment for microbially-derived blood metabolites associated with impaired kidney function. Biorxiv : the Preprint Server For Biology. PMID 36945445 DOI: 10.1101/2023.03.04.531100  0.654
2023 Diener C, Gibbons SM. More is Different: Metabolic Modeling of Diverse Microbial Communities. Msystems. e0127022. PMID 36943046 DOI: 10.1128/msystems.01270-22  0.638
2023 Watanabe K, Wilmanski T, Diener C, Earls JC, Zimmer A, Lincoln B, Hadlock JJ, Lovejoy JC, Gibbons SM, Magis AT, Hood L, Price ND, Rappaport N. Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention. Nature Medicine. PMID 36941332 DOI: 10.1038/s41591-023-02248-0  0.621
2023 Bohmann N, Wilmanski T, Levy L, Lampe JW, Gurry T, Rappaport N, Diener C, Gibbons SM. Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut. Biorxiv : the Preprint Server For Biology. PMID 36909644 DOI: 10.1101/2023.02.28.530516  0.695
2022 Diener C, Dai CL, Wilmanski T, Baloni P, Smith B, Rappaport N, Hood L, Magis AT, Gibbons SM. Genome-microbiome interplay provides insight into the determinants of the human blood metabolome. Nature Metabolism. PMID 36357685 DOI: 10.1038/s42255-022-00670-1  0.616
2022 Wilmanski T, Kornilov SA, Diener C, Conomos MP, Lovejoy JC, Sebastiani P, Orwoll ES, Hood L, Price ND, Rappaport N, Magis AT, Gibbons SM. Heterogeneity in statin responses explained by variation in the human gut microbiome. Med (New York, N.Y.). 3: 388-405.e6. PMID 35690059 DOI: 10.1016/j.medj.2022.04.007  0.587
2021 Kordahi MC, Stanaway IB, Avril M, Chac D, Blanc MP, Ross B, Diener C, Jain S, McCleary P, Parker A, Friedman V, Huang J, Burke W, Gibbons SM, Willis AD, et al. Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer. Cell Host & Microbe. PMID 34536346 DOI: 10.1016/j.chom.2021.08.013  0.59
2021 Diener C, Qin S, Zhou Y, Patwardhan S, Tang L, Lovejoy JC, Magis AT, Price ND, Hood L, Gibbons SM. Baseline Gut Metagenomic Functional Gene Signature Associated with Variable Weight Loss Responses following a Healthy Lifestyle Intervention in Humans. Msystems. e0096421. PMID 34519531 DOI: 10.1128/mSystems.00964-21  0.754
2021 Wilmanski T, Rappaport N, Diener C, Gibbons SM, Price ND. From taxonomy to metabolic output: what factors define gut microbiome health? Gut Microbes. 13: 1-20. PMID 33890557 DOI: 10.1080/19490976.2021.1907270  0.649
2021 Diener C, Hoge ACH, Kearney SM, Kusebauch U, Patwardhan S, Moritz RL, Erdman SE, Gibbons SM. Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut. Communications Biology. 4: 316. PMID 33750910 DOI: 10.1038/s42003-021-01841-8  0.769
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, et al. Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. PMID 33731896 DOI: 10.1038/s42255-021-00377-9  0.753
2021 Day JA, Diener C, Otwell AE, Tams KE, Bebout B, Detweiler AM, Lee MD, Scott MT, Ta W, Ha M, Carreon SA, Tong K, Ali AA, Gibbons SM, Baliga NS. Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics. Plos One. 16: e0247534. PMID 33621265 DOI: 10.1371/journal.pone.0247534  0.592
2021 Wilmanski T, Diener C, Rappaport N, Patwardhan S, Wiedrick J, Lapidus J, Earls JC, Zimmer A, Glusman G, Robinson M, Yurkovich JT, Kado DM, Cauley JA, Zmuda J, Lane NE, et al. Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature Metabolism. 3: 274-286. PMID 33619379 DOI: 10.1038/s42255-021-00348-0  0.772
2021 Patwardhan S, Diener C, Swegle S, Howsmon B, Gibbons SM. What Are Poop Transplants and How Do They Work? Frontiers For Young Minds. 9. DOI: 10.3389/frym.2021.571389  0.749
2020 Diener C, Reyes-Escogido ML, Jimenez-Ceja LM, Matus M, Gomez-Navarro CM, Chu ND, Zhong V, Tejero ME, Alm E, Resendis-Antonio O, Guardado-Mendoza R. Progressive Shifts in the Gut Microbiome Reflect Prediabetes and Diabetes Development in a Treatment-Naive Mexican Cohort. Frontiers in Endocrinology. 11: 602326. PMID 33488518 DOI: 10.3389/fendo.2020.602326  0.557
2020 Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, et al. MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. PMID 32123384 DOI: 10.1038/S41587-020-0446-Y  0.304
2020 Diener C, Gibbons SM, Resendis-Antonio O. MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota. Msystems. 5. PMID 31964767 DOI: 10.1128/mSystems.00606-19  0.693
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Diener C, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6  0.664
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Diener C, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9  0.651
2019 Carr A, Diener C, Baliga NS, Gibbons SM. Use and abuse of correlation analyses in microbial ecology. The Isme Journal. PMID 31253856 DOI: 10.1038/S41396-019-0459-Z  0.731
2018 Hale VL, Jeraldo P, Chen J, Mundy M, Yao J, Priya S, Keeney G, Lyke K, Ridlon J, White BA, French AJ, Thibodeau SN, Diener C, Resendis-Antonio O, Gransee J, et al. Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Genome Medicine. 10: 78. PMID 30376889 DOI: 10.1186/S13073-018-0586-6  0.357
2018 Hale VL, Jeraldo P, Mundy M, Yao J, Keeney G, Scott N, Heidi Cheek E, Davidson J, Green M, Martinez C, Lehman J, Pettry C, Reed E, Lyke K, White BA, ... Diener C, et al. Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer. Methods (San Diego, Calif.). PMID 29704665 DOI: 10.1016/J.Ymeth.2018.04.024  0.392
2016 Diener C, Resendis-Antonio O. Personalized Prediction of Proliferation Rates and Metabolic Liabilities in Cancer Biopsies. Frontiers in Physiology. 7: 644. PMID 28082911 DOI: 10.3389/Fphys.2016.00644  0.324
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