| Year |
Citation |
Score |
| 2023 |
Grochowski CM, Bengtsson JD, Du H, Gandhi M, Lun MY, Mehaffey MG, Park K, Höps W, Benito-Garagorri E, Hasenfeld P, Korbel JO, Mahmoud M, Paulin LF, Jhangiani SN, Muzny DM, ... ... Harrington E, et al. Break-induced replication underlies formation of inverted triplications and generates unexpected diversity in haplotype structures. Biorxiv : the Preprint Server For Biology. PMID 37873367 DOI: 10.1101/2023.10.02.560172 |
0.528 |
|
| 2022 |
Deshpande AS, Ulahannan N, Pendleton M, Dai X, Ly L, Behr JM, Schwenk S, Liao W, Augello MA, Tyer C, Rughani P, Kudman S, Tian H, Otis HG, Adney E, ... ... Harrington E, et al. Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing. Nature Biotechnology. PMID 35637420 DOI: 10.1038/s41587-022-01289-z |
0.328 |
|
| 2020 |
Beaulaurier J, Luo E, Eppley JM, Den Uyl P, Dai X, Burger A, Turner DJ, Pendleton M, Juul S, Harrington E, DeLong EF. Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities. Genome Research. PMID 32075851 DOI: 10.1101/Gr.251686.119 |
0.337 |
|
| 2020 |
Choi JY, Lye ZN, Groen SC, Dai X, Rughani P, Zaaijer S, Harrington ED, Juul S, Purugganan MD. Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice. Genome Biology. 21: 21. PMID 32019604 DOI: 10.1186/s13059-020-1938-2 |
0.313 |
|
| 2019 |
Carvalho CMB, Coban-Akdemir Z, Hijazi H, Yuan B, Pendleton M, Harrington E, Beaulaurier J, Juul S, Turner DJ, Kanchi RS, Jhangiani SN, Muzny DM, Gibbs RA, Stankiewicz P, et al. Interchromosomal template-switching as a novel molecular mechanism for imprinting perturbations associated with Temple syndrome. Genome Medicine. 11: 25. PMID 31014393 DOI: 10.1186/S13073-019-0633-Y |
0.316 |
|
| 2012 |
Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC. Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). Genome Research. 22: 1107-19. PMID 22434425 DOI: 10.1101/Gr.131482.111 |
0.323 |
|
| 2010 |
Harrington ED, Arumugam M, Raes J, Bork P, Relman DA. SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinformatics (Oxford, England). 26: 2979-80. PMID 20966005 DOI: 10.1093/Bioinformatics/Btq564 |
0.739 |
|
| 2010 |
Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics (Oxford, England). 26: 2977-8. PMID 20959381 DOI: 10.1093/Bioinformatics/Btq536 |
0.728 |
|
| 2010 |
Suyama M, Harrington ED, Vinokourova S, von Knebel Doeberitz M, Ohara O, Bork P. A network of conserved co-occurring motifs for the regulation of alternative splicing. Nucleic Acids Research. 38: 7916-26. PMID 20702423 DOI: 10.1093/Nar/Gkq705 |
0.69 |
|
| 2009 |
Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boué S, Eyras E, Plass M, Lopez F, et al. ASTD: The Alternative Splicing and Transcript Diversity database. Genomics. 93: 213-20. PMID 19059335 DOI: 10.1016/J.Ygeno.2008.11.003 |
0.605 |
|
| 2008 |
Harrington ED, Bork P. Sircah: a tool for the detection and visualization of alternative transcripts. Bioinformatics (Oxford, England). 24: 1959-60. PMID 18635569 DOI: 10.1093/Bioinformatics/Btn361 |
0.531 |
|
| 2008 |
Pallejà A, Harrington ED, Bork P. Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions? Bmc Genomics. 9: 335. PMID 18627618 DOI: 10.1186/1471-2164-9-335 |
0.673 |
|
| 2008 |
Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D, Bork P. A molecular study of microbe transfer between distant environments. Plos One. 3: e2607. PMID 18612393 DOI: 10.1371/Journal.Pone.0002607 |
0.741 |
|
| 2008 |
Harrington ED, Jensen LJ, Bork P. Predicting biological networks from genomic data. Febs Letters. 582: 1251-8. PMID 18294967 DOI: 10.1016/J.Febslet.2008.02.033 |
0.674 |
|
| 2008 |
Frishman D, Albrecht M, Blankenburg H, Bork P, Harrington ED, Hermjakob H, Juhl Jensen L, Juan DA, Lengauer T, Pagel P, Schachter V, Valencia A. Protein-protein interactions: Analysis and prediction Modern Genome Annotation: the Biosapiens Network. 353-410. DOI: 10.1007/978-3-211-75123-7_17 |
0.52 |
|
| 2007 |
Harrington ED, Singh AH, Doerks T, Letunic I, von Mering C, Jensen LJ, Raes J, Bork P. Quantitative assessment of protein function prediction from metagenomics shotgun sequences. Proceedings of the National Academy of Sciences of the United States of America. 104: 13913-8. PMID 17717083 DOI: 10.1073/Pnas.0702636104 |
0.705 |
|
| 2007 |
Raes J, Harrington ED, Singh AH, Bork P. Protein function space: viewing the limits or limited by our view? Current Opinion in Structural Biology. 17: 362-9. PMID 17574832 DOI: 10.1016/J.Sbi.2007.05.010 |
0.719 |
|
| 2006 |
Suyama M, Harrington E, Bork P, Torrents D. Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes. Plos Computational Biology. 2: e76. PMID 16846249 DOI: 10.1371/Journal.Pcbi.0020076 |
0.721 |
|
| 2005 |
Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P. Protein coding potential of retroviruses and other transposable elements in vertebrate genomes. Nucleic Acids Research. 33: 946-54. PMID 15716312 DOI: 10.1093/Nar/Gki236 |
0.768 |
|
| 2005 |
Ciccarelli FD, von Mering C, Suyama M, Harrington ED, Izaurralde E, Bork P. Complex genomic rearrangements lead to novel primate gene function. Genome Research. 15: 343-51. PMID 15710750 DOI: 10.1101/Gr.3266405 |
0.767 |
|
| 2004 |
Kim H, Klein R, Majewski J, Ott J, Harrington ED, Boue S, Valcarcel J, Reich JG, Bork P. Estimating rates of alternative splicing in mammals and invertebrates (multiple letters) Nature Genetics. 36: 915-917. PMID 15340420 DOI: 10.1038/Ng0904-915 |
0.472 |
|
| 2004 |
Harrington ED, Boue S, Valcarcel J, Reich JG, Bork P. Estimating rates of alternative splicing in mammals and invertebrates Nature Genetics. 36: 916-917. DOI: 10.1038/ng0904-916 |
0.67 |
|
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