Stephen J. O'Brien - Related publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Morga B, Jacquot M, Pelletier C, Chevignon G, Dégremont L, Biétry A, Pepin JF, Heurtebise S, Escoubas JM, Bean TP, Rosani U, Bai CM, Renault T, Lamy JB. Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species. Frontiers in Microbiology. 12: 711377. PMID 34326830 DOI: 10.3389/fmicb.2021.711377   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Dabral A, Shamoon A, Meena RK, Kant R, Pandey S, Ginwal HS, Bhandari MS. Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 1-16. PMID 34305342 DOI: 10.1007/s12298-021-01035-w   
2021 Dabral A, Shamoon A, Meena RK, Kant R, Pandey S, Ginwal HS, Bhandari MS. Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 1-16. PMID 34305342 DOI: 10.1007/s12298-021-01035-w   
2021 Zhang X, Liu T, Wang J, Wang P, Qiu Y, Zhao W, Pang S, Li X, Wang H, Song J, Zhang W, Yang W, Sun Y, Li X. Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild and weedy radishes. Molecular Plant. PMID 34384905 DOI: 10.1016/j.molp.2021.08.005   
2021 Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C. Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen . Microorganisms. 9. PMID 34361922 DOI: 10.3390/microorganisms9071488   
2021 Kim SH, Lee SJ, Jo E, Kim J, Kim JU, Kim JH, Park H, Chi YM. Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian. Animals : An Open Access Journal From Mdpi. 11. PMID 34359174 DOI: 10.3390/ani11072046   
2021 Mossion V, Dauphin B, Grant J, Kessler M, Zemp N, Croll D. Transcriptome-wide SNPs for Botrychium lunaria ferns enable fine-grained analysis of ploidy and population structure. Molecular Ecology Resources. PMID 34310066 DOI: 10.1111/1755-0998.13478   
2021 Sun Z, Zhang X, Zhou D, Zhou K, Li Q, Lin H, Lu W, Liu H, Lu J, Lin X, Li K, Xu T, Zhu M, Bao Q, Zhang H. Identification of Three Clf-Sdr Subfamily Proteins in , and Comparative Genomics Analysis of a Locus Encoding CWA Proteins in Species. Frontiers in Microbiology. 12: 691087. PMID 34394031 DOI: 10.3389/fmicb.2021.691087   
2021 Trost B, Loureiro LO, Scherer SW. Discovery of genomic variation across a generation. Human Molecular Genetics. PMID 34296264 DOI: 10.1093/hmg/ddab209   
2021 Conde C, Price-Carter M, Cochard T, Branger M, Stevenson K, Whittington R, Bannantine JP, Biet F. Whole-Genome Analysis of subsp. IS -. Frontiers in Microbiology. 12: 660002. PMID 34040595 DOI: 10.3389/fmicb.2021.660002   
2021 Chen H, Li X, Wang Y, Zhu C, Huang H, Yang W, Li G. De Novo Transcriptomic Characterization Enables Novel Microsatellite Identification and Marker Development in . Life (Basel, Switzerland). 11. PMID 34440547 DOI: 10.3390/life11080803   
2021 Patino LH, Castillo-Castañeda A, Muñoz M, Muskus C, Rivero-Rodríguez M, Pérez-Doria A, Bejarano EE, Ramírez JD. Revisiting the heterogeneous global genomic population structure of . Microbial Genomics. 7. PMID 34491157 DOI: 10.1099/mgen.0.000640   
2021 Jackson T, Ishengoma E, Rhode C. Cross-species Exon Capture and Whole Exome Sequencing: Application, Utility and Challenges for Genomic Resource Development in Non-model Species. Marine Biotechnology (New York, N.Y.). PMID 34241713 DOI: 10.1007/s10126-021-10046-3   
2021 Zhang JY, Roberts H, Flores DSC, Cutler AJ, Brown AC, Whalley JP, Mielczarek O, Buck D, Lockstone H, Xella B, Oliver K, Corton C, Betteridge E, Bashford-Rogers R, Knight JC, et al. Using de novo assembly to identify structural variation of eight complex immune system gene regions. Plos Computational Biology. 17: e1009254. PMID 34343164 DOI: 10.1371/journal.pcbi.1009254   
2021 Guo Y, Wariss HM, Zhang R. The complete chloroplast genome of (L.) Goldblatt & J. C. Manning (Leguminosae), an important medicinal plant species from Southern Africa. Mitochondrial Dna. Part B, Resources. 6: 2767-2769. PMID 34471699 DOI: 10.1080/23802359.2021.1967811   
2021 Luzuriaga-Aveiga VE, Ugarte M, Weir JT. Distinguishing genomic homogenization from parapatric speciation in an elevationally replacing pair of Ramphocelus tanagers. Molecular Ecology. PMID 34403554 DOI: 10.1111/mec.16128   
2021 Yuan XL, Zha DX, Xue L, Wang XY, Xu G, Li WB, Xu HQ. Complete chloroplast genome sequence of and its phylogenetic position. Mitochondrial Dna. Part B, Resources. 6: 2480-2481. PMID 34377800 DOI: 10.1080/23802359.2021.1915199   
2021 Zhang Y, Wang S, Li H, Liu C, Mi F, Wang R, Mo M, Xu J. Evidence for Persistent Heteroplasmy and Ancient Recombination in the Mitochondrial Genomes of the Edible Yellow Chanterelles From Southwestern China and Europe. Frontiers in Microbiology. 12: 699598. PMID 34335532 DOI: 10.3389/fmicb.2021.699598   
2021 Farré X, Molina R, Barteri F, Timmers PRHJ, Joshi PK, Oliva B, Acosta S, Esteve-Altava B, Navarro A, Muntané G. Comparative analysis of mammal genomes unveils key genomic variability for human lifespan. Molecular Biology and Evolution. PMID 34297086 DOI: 10.1093/molbev/msab219   
2021 Farré X, Molina R, Barteri F, Timmers PRHJ, Joshi PK, Oliva B, Acosta S, Esteve-Altava B, Navarro A, Muntané G. Comparative analysis of mammal genomes unveils key genomic variability for human lifespan. Molecular Biology and Evolution. PMID 34297086 DOI: 10.1093/molbev/msab219   
2021 Tarekegn GM, Khayatzadeh N, Liu B, Osama S, Haile A, Rischkowsky B, Zhang W, Tesfaye K, Dessie T, Mwai OA, Djikeng A, Mwacharo JM. Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub-Saharan African goats. Evolutionary Applications. 14: 1716-1731. PMID 34295359 DOI: 10.1111/eva.13118   
2021 Zhang F, Wang N, Cheng G, Shu X, Wang T, Zhuang W, Lu R, Wang Z. Comparative Chloroplast Genomes of Four Species (Amaryllidaceae) Provides New Insight into Interspecific Relationship and Phylogeny. Biology. 10. PMID 34439948 DOI: 10.3390/biology10080715   
2021 Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L. The Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of and Its Closely Related Taxa. Microorganisms. 9. PMID 34442649 DOI: 10.3390/microorganisms9081570   
2021 Tian C, Li X, Wu Z, Li Z, Hou X, Li FY. Characterization and Comparative Analysis of Complete Chloroplast Genomes of Three Species From the Genus (Leguminosae). Frontiers in Genetics. 12: 705482. PMID 34422006 DOI: 10.3389/fgene.2021.705482   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Yan SM, Sherman RM, Taylor DJ, Nair DR, Bortvin AN, Schatz MC, McCoy RC. Local adaptation and archaic introgression shape global diversity at human structural variant loci. Elife. 10. PMID 34528508 DOI: 10.7554/eLife.67615   
2021 Wold J, Koepfli KP, Galla SJ, Eccles D, Hogg CJ, Le Lec MF, Guhlin J, Santure AW, Steeves TE. Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern. Molecular Ecology. PMID 34424587 DOI: 10.1111/mec.16141   
2021 Chacón-Vargas K, McCarthy CO, Choi D, Wang L, Yu JH, Gibbons JG. Comparison of Two Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism. Frontiers in Microbiology. 12: 691296. PMID 34326825 DOI: 10.3389/fmicb.2021.691296   
2021 Rahman MM, Kader SB, Rizvi SMS. Molecular characterization of SARS-CoV-2 from Bangladesh: implications in genetic diversity, possible origin of the virus, and functional significance of the mutations. Heliyon. 7: e07866. PMID 34458642 DOI: 10.1016/j.heliyon.2021.e07866   
2021 Zhu S, Li J. Determination of the complete mitochondrial genome of (Siluriformes: Bagridae) and its phylogeny. Mitochondrial Dna. Part B, Resources. 6: 2371-2372. PMID 34345699 DOI: 10.1080/23802359.2021.1951626   
2021 Lou RN, Jacobs A, Wilder A, Therkildsen NO. A beginner's guide to low-coverage whole genome sequencing for population genomics. Molecular Ecology. PMID 34250668 DOI: 10.1111/mec.16077   
2021 Lou RN, Jacobs A, Wilder A, Therkildsen NO. A beginner's guide to low-coverage whole genome sequencing for population genomics. Molecular Ecology. PMID 34250668 DOI: 10.1111/mec.16077   
2021 Cavassim MIA, Andersen SU, Bataillon T, Schierup MH. Recombination facilitates adaptive evolution in rhizobial soil bacteria. Molecular Biology and Evolution. PMID 34410427 DOI: 10.1093/molbev/msab247   
2021 Gan J, Li Y, Wan Y, Li J, Zhang B. The complete mitochondrial genome sequence of (Anura: Ranidae). Mitochondrial Dna. Part B, Resources. 6: 2418-2419. PMID 34350353 DOI: 10.1080/23802359.2021.1920502   
2021 Moghaddar N, Brown DJ, Swan AA, Gurman PM, Li L, van der Werf JH. Genomic prediction in a numerically small breed population using prioritized genetic markers from whole-genome sequence data. Journal of Animal Breeding and Genetics = Zeitschrift Fur Tierzuchtung Und Zuchtungsbiologie. PMID 34374454 DOI: 10.1111/jbg.12638   
2021 Vervoort L, Dierckxsens N, Pereboom Z, Capozzi O, Rocchi M, Shaikh TH, Vermeesch JR. 22q11.2 Low Copy Repeats Expanded in the Human Lineage. Frontiers in Genetics. 12: 706641. PMID 34335701 DOI: 10.3389/fgene.2021.706641   
2021 Lupande-Mwenebitu D, Khedher MB, Khabthani S, Rym L, Phoba MF, Nabti LZ, Lunguya-Metila O, Pantel A, Lavigne JP, Rolain JM, Diene SM. First Genome Description of Isolate Bearing NDM-1 from Blood Culture. Microorganisms. 9. PMID 34442831 DOI: 10.3390/microorganisms9081751   
2021 Ju X, Shi G, Chen S, Dai W, He T. Characterization and phylogenetic analysis of the complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 2750-2751. PMID 34471694 DOI: 10.1080/23802359.2021.1967799   
2021 Nitnaware KM, Raskar KB, Agarwal G, Chávez Montes RA, Chopra R, López-Arredondo DL, Nikam TD, Patil GB. Whole-genome characterization and comparative genomics of a novel freshwater cyanobacteria species: Pseudanabaena punensis. Molecular Phylogenetics and Evolution. 164: 107272. PMID 34332035 DOI: 10.1016/j.ympev.2021.107272   
2021 Yu L, Ma X, Wadlington W, Ming R. Identification of structural variation and polymorphisms of a sex co-segregating scaffold in spinach. Plant Reproduction. PMID 34319458 DOI: 10.1007/s00497-021-00424-1   
2021 Wang L, Liao B, Gong L, Xiao S, Huang Z. Haploid Genome Analysis Reveals a Tandem Cluster of Four Genes Involved in the High-Temperature Adaptation of . Microbiology Spectrum. e0028721. PMID 34406871 DOI: 10.1128/Spectrum.00287-21   
2021 Xu J, Liu C, Song Y, Li M. Comparative Analysis of the Chloroplast Genome for Four Species: Molecular Structure and Phylogenetic Relationships. Frontiers in Genetics. 12: 687844. PMID 34386040 DOI: 10.3389/fgene.2021.687844   
2021 Fu YB. Characterizing chloroplast genomes and inferring maternal divergence of the Triticum-Aegilops complex. Scientific Reports. 11: 15363. PMID 34321524 DOI: 10.1038/s41598-021-94649-9   
2021 Li Y, Liu H, Zou J. Complete chloroplast genome of : a species endemic to Guizhou, China. Mitochondrial Dna. Part B, Resources. 6: 2596-2598. PMID 34395889 DOI: 10.1080/23802359.2021.1961625   
2021 Qiu Z, Zhu Y, Du Z, Bao P. The complete chloroplast genome sequence of the mangrove associate species . Mitochondrial Dna. Part B, Resources. 6: 2376-2378. PMID 34345700 DOI: 10.1080/23802359.2021.1925171   
2021 Hao J, Liang Y, Zhu M, Ping J, Feng P, Su Y, Wang T. The complete chloroplast genome of L. (Ophioglossaceae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2730-2731. PMID 34447885 DOI: 10.1080/23802359.2021.1966333   
2021 Chen Z, Shen M, Mao C, Wang C, Yuan P, Wang T, Sun D. A Type I Restriction Modification System Influences Genomic Evolution Driven by Horizontal Gene Transfer in . Frontiers in Microbiology. 12: 709571. PMID 34413842 DOI: 10.3389/fmicb.2021.709571   
2021 Song YY, Cui XS, Xu L, Xing YP, Bian C, Qiao Y, Yang YY, Kang TG. The complete mitochondrial genome of Nakai (Dryopteridaceae, Adanson). Mitochondrial Dna. Part B, Resources. 6: 2704-2705. PMID 34435126 DOI: 10.1080/23802359.2021.1966344   
2021 Fan ZF, Yu DY, Ma CL. The complete chloroplast genome sequence of Rolfe, a vulnerable wild moth orchid species (Orchidaceae). Mitochondrial Dna. Part B, Resources. 6: 2903-2905. PMID 34532582 DOI: 10.1080/23802359.2021.1923420