Jie Xiao - Publications

Affiliations: 
Biophysics & Biophysical Chemistry Johns Hopkins University School of Medicine, Baltimore, MD, United States 

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Lyu Z, Yahashiri A, Yang X, McCausland JW, Kaus GM, McQuillen R, Weiss DS, Xiao J. FtsN maintains active septal cell wall synthesis by forming a processive complex with the septum-specific peptidoglycan synthases in E. coli. Nature Communications. 13: 5751. PMID 36180460 DOI: 10.1038/s41467-022-33404-8  0.777
2022 Geng Y, Bohrer CH, Yehya N, Hendrix H, Shachaf L, Liu J, Xiao J, Roberts E. A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation. Plos Computational Biology. 18: e1009788. PMID 36121892 DOI: 10.1371/journal.pcbi.1009788  0.754
2021 Zhong AN, Yin Y, Tang BJ, Chen L, Shen HW, Tan ZP, Li WQ, He Q, Sun B, Zhu Y, Xiao J, Jiang ZP, Xu P. CircRNA Microarray Profiling Reveals hsa_circ_0058493 as a Novel Biomarker for Imatinib-Resistant CML. Frontiers in Pharmacology. 12: 728916. PMID 34588984 DOI: 10.3389/fphar.2021.728916  0.405
2021 Bohrer CH, Yang X, Thakur S, Weng X, Tenner B, McQuillen R, Ross B, Wooten M, Chen X, Zhang J, Roberts E, Lakadamyali M, Xiao J. A pairwise distance distribution correction (DDC) algorithm to eliminate blinking-caused artifacts in SMLM. Nature Methods. PMID 34059826 DOI: 10.1038/s41592-021-01154-y  0.731
2021 Gyparaki MT, Arab A, Sorokina EM, Santiago-Ruiz AN, Bohrer CH, Xiao J, Lakadamyali M. Tau forms oligomeric complexes on microtubules that are distinct from tau aggregates. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33952699 DOI: 10.1073/pnas.2021461118  0.728
2021 Yang X, McQuillen R, Lyu Z, Phillips-Mason P, De La Cruz A, McCausland JW, Liang H, DeMeester KE, Santiago CC, Grimes CL, de Boer P, Xiao J. A two-track model for the spatiotemporal coordination of bacterial septal cell wall synthesis revealed by single-molecule imaging of FtsW. Nature Microbiology. PMID 33495624 DOI: 10.1038/s41564-020-00853-0  0.783
2020 Tenner B, Getz M, Ross B, Ohadi D, Bohrer CH, Greenwald E, Mehta S, Xiao J, Rangamani P, Zhang J. Spatially compartmentalized phase regulation of a Ca-cAMP-PKA oscillatory circuit. Elife. 9. PMID 33201801 DOI: 10.7554/eLife.55013  0.726
2020 Xiao J, Shi H, Tao L, Qi L, Min W, Zhang H, Yu M, Sun Z. Effect of Fibres on the Failure Mechanism of Composite Tubes under Low-Velocity Impact. Materials (Basel, Switzerland). 13. PMID 32957720 DOI: 10.3390/ma13184143  0.376
2020 Bohrer CH, Xiao J. Complex Diffusion in Bacteria. Advances in Experimental Medicine and Biology. 1267: 15-43. PMID 32894475 DOI: 10.1007/978-3-030-46886-6_2  0.749
2020 Bettridge K, Verma S, Weng X, Adhya S, Xiao J. Single-molecule tracking reveals that the nucleoid-associated protein HU plays a dual-role in maintaining proper nucleoid volume through differential interactions with chromosomal DNA. Molecular Microbiology. PMID 32640056 DOI: 10.1111/Mmi.14572  0.313
2020 McQuillen R, Xiao J. Insights into the Structure, Function, and Dynamics of the Bacterial Cytokinetic FtsZ-Ring. Annual Review of Biophysics. PMID 32092282 DOI: 10.1146/Annurev-Biophys-121219-081703  0.773
2019 Weng X, Bohrer CH, Bettridge K, Lagda AC, Cagliero C, Jin DJ, Xiao J. Spatial organization of RNA polymerase and its relationship with transcription in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31527272 DOI: 10.1073/Pnas.1903968116  0.762
2019 Bohrer CH, Roberts E, Xiao J. The Chromosome's Fight Against Disorder in E. coli Biophysical Journal. 116: 73a. DOI: 10.1016/J.Bpj.2018.11.437  0.724
2019 McCausland J, Xiao J. Dynamics of FtsI, an Essential Bacterial Cell Wall Synthesis Protein Biophysical Journal. 116: 545a. DOI: 10.1016/J.Bpj.2018.11.2933  0.361
2019 McQuillen RJ, Xiao J. Rapid Light-Triggered Spatial Reorganization of Proteins in Living Bacteria Cells Biophysical Journal. 116: 545a. DOI: 10.1016/J.Bpj.2018.11.2931  0.759
2019 Yang X, Xiao J. Dynamics of Bacterial Cell Wall Synthesis Proteins during Cytokinesis Biophysical Journal. 116: 325a. DOI: 10.1016/J.Bpj.2018.11.1761  0.357
2018 van Oijen AM, Duderstadt KE, Xiao J, Fishel R. Special Issue on Plasticity of Multi-Protein Complexes. Journal of Molecular Biology. PMID 30102893 DOI: 10.1016/J.Jmb.2018.08.008  0.522
2018 Fang X, Liu Q, Bohrer C, Hensel Z, Han W, Wang J, Xiao J. Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch. Nature Communications. 9: 2787. PMID 30018349 DOI: 10.1038/S41467-018-05071-1  0.757
2017 Woldemeskel S, McQuillen R, Hessel AM, Xiao J, Goley ED. A Conserved Coiled-Coil Protein Pair Focuses the Cytokinetic Z-Ring in Caulobacter crescentus. Molecular Microbiology. PMID 28613431 DOI: 10.1111/Mmi.13731  0.774
2017 Mo GC, Ross B, Hertel F, Manna P, Yang X, Greenwald E, Booth C, Plummer AM, Tenner B, Chen Z, Wang Y, Kennedy EJ, Cole PA, Fleming KG, Palmer A, ... ... Xiao J, et al. Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution. Nature Methods. PMID 28288122 DOI: 10.1038/Nmeth.4221  0.374
2017 Bohrer CH, Bettridge K, Xiao J. Reduction of Confinement Error in Single-Molecule Tracking in Live Bacterial Cells Using SPICER. Biophysical Journal. 112: 568-574. PMID 28256217 DOI: 10.1016/J.Bpj.2017.01.004  0.763
2017 Buss JA, Peters NT, Xiao J, Bernhardt TG. ZapA and ZapB form an FtsZ-independent structure at midcell. Molecular Microbiology. PMID 28249098 DOI: 10.1111/Mmi.13655  0.325
2017 Yang X, Lyu Z, Miguel A, McQuillen R, Huang KC, Xiao J. GTPase activity-coupled treadmilling of the bacterial tubulin FtsZ organizes septal cell wall synthesis. Science (New York, N.Y.). 355: 744-747. PMID 28209899 DOI: 10.1126/Science.Aak9995  0.779
2017 Coltharp C, Xiao J. Beyond force generation: Why is a dynamic ring of FtsZ polymers essential for bacterial cytokinesis? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 39: 1-11. PMID 28004447 DOI: 10.1002/Bies.201600179  0.349
2017 Bettridge K, Bohrer C, Xiao J. Investigating RNAP Search Dynamics in Live E. Coli Cells using Single Molecule and Statistical Methods Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1693  0.419
2017 Weng X, Bohrer C, Lagda A, Xiao J. Spatial Organization of Transcription in E. Coli using Super-Resolution Fluorescence Microscopy Biophysical Journal. 112: 212a. DOI: 10.1016/J.Bpj.2016.11.1170  0.773
2016 Xiao J, Dufrêne YF. Optical and force nanoscopy in microbiology. Nature Microbiology. 1: 16186. PMID 27782138 DOI: 10.1038/Nmicrobiol.2016.186  0.332
2016 Xiao J, Goley ED. Redefining the roles of the FtsZ-ring in bacterial cytokinesis. Current Opinion in Microbiology. 34: 90-96. PMID 27620716 DOI: 10.1016/J.Mib.2016.08.008  0.338
2016 Lyu Z, Coltharp C, Yang X, Xiao J. Influence of FtsZ GTPase activity and concentration on nanoscale Z-ring structure in vivo revealed by three-dimensional superresolution imaging. Biopolymers. PMID 27310678 DOI: 10.1002/Bip.22895  0.318
2016 Coltharp C, Buss J, Plumer TM, Xiao J. Defining the rate-limiting processes of bacterial cytokinesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26831086 DOI: 10.1073/Pnas.1514296113  0.35
2016 Luo Y, Yang X, Tan X, Xu L, Liu Z, Xiao J, Peng R. Functionalized graphene oxide in microbial engineering: An effective stimulator for bacterial growth Carbon. 103: 172-180. DOI: 10.1016/J.Carbon.2016.03.012  0.301
2015 Buss J, Coltharp C, Shtengel G, Yang X, Hess H, Xiao J. A multi-layered protein network stabilizes the Escherichia coli FtsZ-ring and modulates constriction dynamics. Plos Genetics. 11: e1005128. PMID 25848771 DOI: 10.1371/Journal.Pgen.1005128  0.404
2015 Coltharp C, Xiao J. Superresolution Investigation of the E. coli Cell Division Ring during Constriction Biophysical Journal. 108: 600. DOI: 10.1016/J.Bpj.2014.11.3265  0.358
2015 Weng X, Lagda AC, Xiao J. Spatial Organization of Transcription in E. coli Cells Biophysical Journal. 108: 535a. DOI: 10.1016/J.Bpj.2014.11.2932  0.367
2015 Bettridge K, Bohrer C, Yang X, Klein M, Xiao J. Uncovering the Dynamics of RNA Polymerase in Live E. coli Cells Biophysical Journal. 108: 535. DOI: 10.1016/J.Bpj.2014.11.2931  0.782
2015 Xiao J, Coltharp C, Weng X, Buss J, Yang X, Lagda A. Spatial and Functional Organization of Bacterial Subcellular Structures in Superresolution Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.221  0.384
2015 Yang X, Herrick Bohrer C, Xiao J. Dynamic Turnover of FtsZ-Ring in Live Cell Biophysical Journal. 108: 321a-322a. DOI: 10.1016/J.Bpj.2014.11.1749  0.377
2014 Coltharp C, Yang X, Xiao J. Quantitative analysis of single-molecule superresolution images. Current Opinion in Structural Biology. 28: 112-21. PMID 25179006 DOI: 10.1016/J.Sbi.2014.08.008  0.308
2014 Weng X, Xiao J. Spatial organization of transcription in bacterial cells. Trends in Genetics : Tig. 30: 287-97. PMID 24862529 DOI: 10.1016/J.Tig.2014.04.008  0.378
2013 Buss J, Coltharp C, Huang T, Pohlmeyer C, Wang SC, Hatem C, Xiao J. In vivo organization of the FtsZ-ring by ZapA and ZapB revealed by quantitative super-resolution microscopy. Molecular Microbiology. 89: 1099-120. PMID 23859153 DOI: 10.1111/Mmi.12331  0.402
2013 Hensel Z, Weng X, Lagda AC, Xiao J. Transcription-factor-mediated DNA looping probed by high-resolution, single-molecule imaging in live E. coli cells. Plos Biology. 11: e1001591. PMID 23853547 DOI: 10.1371/Journal.Pbio.1001591  0.384
2013 Hensel Z, Fang X, Xiao J. Single-molecule imaging of gene regulation in vivo using cotranslational activation by Cleavage (CoTrAC). Journal of Visualized Experiments : Jove. e50042. PMID 23524866 DOI: 10.3791/50042  0.363
2013 Hensel Z, Xiao J. Single-molecule methods for studying gene regulation in vivo. PflüGers Archiv : European Journal of Physiology. 465: 383-95. PMID 23430319 DOI: 10.1007/S00424-013-1243-Y  0.338
2013 Buss J, Coltharp C, Xiao J. Super-resolution imaging of the bacterial division machinery. Journal of Visualized Experiments : Jove. PMID 23380691 DOI: 10.3791/50048  0.384
2013 Coltharp C, Buss J, Xiao J. Superresolution Investigation of the Dynamics of FtsZ Structures during E. Coli Cell Division Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.808  0.365
2013 Feehery T, Buss J, Xiao J, Schildbach J. Investigating Rate of TraI and DNA Transfer during Bacterial Conjugation Biophysical Journal. 104: 575a. DOI: 10.1016/J.Bpj.2012.11.3195  0.329
2013 Buss JA, Coltharp C, Pohlmeyer C, Xiao J. A Super-Resolution Study of the Structural Organization of the E. Coli FTSZ-Ring by ZapA and ZapB Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.1894  0.348
2013 Buss J, Coltharp C, Xiao J. Structures and Dynamics of the E. Coli FtsZ-Ring and its Associated Proteins during Cell Division Revealed by Superresolution Imaging Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.035  0.38
2012 Coltharp C, Xiao J. Superresolution microscopy for microbiology. Cellular Microbiology. 14: 1808-18. PMID 22947061 DOI: 10.1111/Cmi.12024  0.321
2012 Hensel Z, Feng H, Han B, Hatem C, Wang J, Xiao J. Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis Nature Structural & Molecular Biology. 19: 797-802. PMID 22751020 DOI: 10.1038/Nsmb.2336  0.308
2012 Feng H, Hensel Z, Xiao J, Wang J. Analytical calculation of protein production distributions in models of clustered protein expression Physical Review E. 85: 31904-31904. PMID 22587120 DOI: 10.1103/Physreve.85.031904  0.303
2012 Coltharp C, Fu G, Huang T, Buss J, Hensel Z, Xiao J. Superresolution Investigation of In Vivo Structure and Dynamics of E. coli FtsZ Structures during Cytokinesis Biophysical Journal. 102: 695a. DOI: 10.1016/J.Bpj.2011.11.3772  0.357
2012 Buss JA, Xiao J. Regulating Bacterial Cytokinesis: A Super-Resolution Study of ZapA and ZapB Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2105  0.399
2012 Xiao J, Hensel Z, Feng H, Han B, Wang J. Stochastic Properties of Transcription Factor Expression Revealed by Single-Molecule Noise Analysis Biophysical Journal. 102: 383a. DOI: 10.1016/J.Bpj.2011.11.2097  0.303
2011 Hensel Z, Feng H, Han B, Hatem C, Liu X, Wang J, Xiao J. Transcription Activation via Transcriptional Bursting Biophysical Journal. 100: 167a. DOI: 10.1016/J.Bpj.2010.12.1129  0.323
2010 Fu G, Huang T, Buss J, Coltharp C, Hensel Z, Xiao J. In vivo structure of the E. coli FtsZ-ring revealed by photoactivated localization microscopy (PALM). Plos One. 5: e12682. PMID 20856929 DOI: 10.1371/Journal.Pone.0012680  0.374
2009 Hensel Z, Xiao J. A Mechanism for Stochastic Decision Making by Bacteria Chembiochem. 10: 974-976. PMID 19294726 DOI: 10.1002/Cbic.200800824  0.317
2009 Hensel Z, Hatem CL, Xiao J. A Single-Molecule Study of Gene Regulation in Real Time Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.2883  0.329
2007 Singleton SF, Roca AI, Lee AM, Xiao J. Probing the structure of RecA-DNA filaments. Advantages of a fluorescent guanine analog. Tetrahedron. 63: 3553-3566. PMID 17955055 DOI: 10.1016/J.Tet.2006.10.092  0.674
2006 Xiao J, Lee AM, Singleton SF. Direct evaluation of a kinetic model for RecA-mediated DNA-strand exchange: the importance of nucleic acid dynamics and entropy during homologous genetic recombination. Chembiochem : a European Journal of Chemical Biology. 7: 1265-78. PMID 16847846 DOI: 10.1002/Cbic.200600038  0.677
2006 Lee AM, Xiao J, Singleton SF. Origins of sequence selectivity in homologous genetic recombination: insights from rapid kinetic probing of RecA-mediated DNA strand exchange. Journal of Molecular Biology. 360: 343-59. PMID 16756994 DOI: 10.1016/J.Jmb.2006.04.065  0.661
2006 Yu J, Xiao J, Ren X, Lao K, Xie XS. Probing gene expression in live cells, one protein molecule at a time. Science (New York, N.Y.). 311: 1600-3. PMID 16543458 DOI: 10.1126/Science.1119623  0.525
2006 Xiao J, Lee AM, Singleton SF. Construction and evaluation of a kinetic scheme for RecA-mediated DNA strand exchange. Biopolymers. 81: 473-96. PMID 16421856 DOI: 10.1002/Bip.20446  0.676
2006 Xiao J, Lee AM, Singleton SF. Cover Picture: Direct Evaluation of a Kinetic Model for RecA-Mediated DNA-strand exchange: The Importance of Nucleic Acid Dynamics and Entropy During Homologous Genetic Recombination (ChemBioChem 8/2006) Chembiochem. 7: 1129-1129. DOI: 10.1002/Cbic.200690024  0.651
2002 Xiao J, Singleton SF. Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer. Journal of Molecular Biology. 320: 529-58. PMID 12096908 DOI: 10.1016/S0022-2836(02)00462-X  0.668
2001 Singleton SF, Xiao J. The stretched DNA geometry of recombination and repair nucleoprotein filaments. Biopolymers. 61: 145-58. PMID 11987178 DOI: 10.1002/Bip.10145  0.668
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