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Shannon Hackett, Ph.D. - Publications

Affiliations: 
Zoology Field Museum of Natural History, Chicago, IL, United States 
Area:
Avian systematics, evolution
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nachman MW, Beckman EJ, Bowie RC, Cicero C, Conroy CJ, Dudley R, Hayes TB, Koo MS, Lacey EA, Martin CH, McGuire JA, Patton JL, Spencer CL, Tarvin RD, Wake MH, ... ... Hackett S, et al. Specimen collection is essential for modern science. Plos Biology. 21: e3002318. PMID 37992027 DOI: 10.1371/journal.pbio.3002318  0.701
2023 Capurucho JMG, Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves). Biodiversity Genomes. 2023. PMID 37153853 DOI: 10.56179/001c.74632  0.588
2023 Eliason CM, Cooper JC, Hackett SJ, Zahnle E, Pequeño Saco TZ, Maddox JD, Hains T, Hauber ME, Bates JM. Interspecific hybridization explains rapid gorget colour divergence in hummingbirds (Aves: Trochilidae). Royal Society Open Science. 10: 221603. PMID 36866078 DOI: 10.1098/rsos.221603  0.538
2022 Hains T, Pirro S, Bates JM, Hackett SJ. The Complete Genome Sequence of , the Carolina Parakeet. Biodiversity Genomes. 2022. PMID 36632172 DOI: 10.56179/001c.66227  0.593
2022 Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequence of the Spix's Macaw. Biodiversity Genomes. 2022. PMID 36467626 DOI: 10.56179/001c.37839  0.588
2022 Hains T, Pirro S, O'Neill K, Valez J, Speed N, Clubb S, Oleksyk T, Bates J, Hackett S. The Complete Genome Sequences of 94 Species of Parrots (Psittaciformes, Aves). Biodiversity Genomes. 2022. PMID 36405343 DOI: 10.56179/001c.40338  0.586
2021 Skeen HR, Cooper NW, Hackett SJ, Bates JM, Marra PP. Repeated sampling of individuals reveals impact of tropical and temperate habitats on microbiota of a migratory bird. Molecular Ecology. PMID 34580952 DOI: 10.1111/mec.16170  0.566
2021 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Hackett SJ, et al. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. PMID 33833441 DOI: 10.1038/s41586-021-03473-8  0.525
2021 McNew SM, Barrow LN, Williamson JL, Galen SC, Skeen HR, DuBay SG, Gaffney AM, Johnson AB, Bautista E, Ordoñez P, Schmitt CJ, Smiley A, Valqui T, Bates JM, Hackett SJ, et al. Contrasting drivers of diversity in hosts and parasites across the tropical Andes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33731475 DOI: 10.1073/pnas.2010714118  0.546
2020 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Hackett SJ, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9  0.584
2018 Kyriazis CC, Alam B, Wjodyla M, Hackett S, Hosner P, Mays HL, Heaney LR, Reddy S. Colonization and diversification of the White-browed Shortwing (Aves: Muscicapidae: Brachypteryx montana) in the Philippines. Molecular Phylogenetics and Evolution. PMID 29305243 DOI: 10.1016/J.Ympev.2017.12.025  0.582
2018 Crouch NMA, Capurucho JMG, Hackett SJ, Bates JM. Evaluating the contribution of dispersal to community structure in Neotropical passerine birds Ecography. 42: 390-399. DOI: 10.1111/Ecog.03927  0.463
2017 Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, et al. Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling. Systematic Biology. PMID 28369655 DOI: 10.1093/Sysbio/Syx041  0.541
2015 Block NL, Goodman SM, Hackett SJ, Bates JM, Raherilalao MJ. Potential merger of ancient lineages in a passerine bird discovered based on evidence from host-specific ectoparasites. Ecology and Evolution. 5: 3743-55. PMID 26380702 DOI: 10.1002/Ece3.1639  0.685
2015 Lutz HL, Hochachka WM, Engel JI, Bell JA, Tkach VV, Bates JM, Hackett SJ, Weckstein JD. Correction: Parasite Prevalence Corresponds to Host Life History in a Diverse Assemblage of Afrotropical Birds and Haemosporidian Parasites. Plos One. 10: e0128851. PMID 25984782 DOI: 10.1371/journal.pone.0128851  0.683
2015 Lutz HL, Hochachka WM, Engel JI, Bell JA, Tkach VV, Bates JM, Hackett SJ, Weckstein JD. Parasite prevalence corresponds to host life history in a diverse assemblage of afrotropical birds and haemosporidian parasites. Plos One. 10: e0121254. PMID 25853491 DOI: 10.1371/Journal.Pone.0121254  0.7
2015 Block NL, Goodman SM, Hackett SJ, Bates JM, Raherilalao MJ. Potential merger of ancient lineages in a passerine bird discovered based on evidence from host-specific ectoparasites Ecology and Evolution. DOI: 10.1002/ece3.1639  0.652
2013 Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL. Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals. Biology. 2: 419-44. PMID 24832669 DOI: 10.3390/Biology2010419  0.511
2012 Reddy S, Driskell A, Rabosky DL, Hackett SJ, Schulenberg TS. Diversification and the adaptive radiation of the vangas of Madagascar. Proceedings. Biological Sciences / the Royal Society. 279: 2062-71. PMID 22217720 DOI: 10.1098/Rspb.2011.2380  0.545
2011 Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, et al. Homoplastic microinversions and the avian tree of life. Bmc Evolutionary Biology. 11: 141. PMID 21612607 DOI: 10.1186/1471-2148-11-141  0.562
2011 Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, et al. Are transposable element insertions homoplasy free?: an examination using the avian tree of life. Systematic Biology. 60: 375-86. PMID 21303823 DOI: 10.1093/Sysbio/Syq100  0.417
2010 Voelker G, Outlaw RK, Reddy S, Tobler M, Bates JM, Hackett SJ, Kahindo C, Marks BD, Kerbis Peterhans JC, Gnoske TP. A new species of boubou (Malaconotidae: Laniarius) from the albertine rift Auk. 127: 678-689. DOI: 10.1525/Auk.2010.09014  0.619
2009 Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, et al. A well-tested set of primers to amplify regions spread across the avian genome. Molecular Phylogenetics and Evolution. 50: 654-60. PMID 19084073 DOI: 10.1016/J.Ympev.2008.11.018  0.449
2009 Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, ... ... Hackett S, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/Jhered/Esp086  0.581
2008 Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, et al. Phylogenomic evidence for multiple losses of flight in ratite birds. Proceedings of the National Academy of Sciences of the United States of America. 105: 13462-7. PMID 18765814 DOI: 10.1073/Pnas.0803242105  0.536
2008 Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, et al. A phylogenomic study of birds reveals their evolutionary history. Science (New York, N.Y.). 320: 1763-8. PMID 18583609 DOI: 10.1126/Science.1157704  0.566
2008 Tobias JA, Bates JM, Hackett SJ, Seddon N. Comment on "The latitudinal gradient in recent speciation and extinction rates of birds and mammals". Science (New York, N.Y.). 319: 901; author reply 90. PMID 18276872 DOI: 10.1126/Science.1150568  0.545
2006 Bowie RC, Fjeldså J, Hackett SJ, Bates JM, Crowe TM. Coalescent models reveal the relative roles of ancestral polymorphism, vicariance, and dispersal in shaping phylogeographical structure of an African montane forest robin. Molecular Phylogenetics and Evolution. 38: 171-88. PMID 16024259 DOI: 10.1016/J.Ympev.2005.06.001  0.554
2005 Cheviron ZA, Hackett SJ, Capparella AP. Complex evolutionary history of a Neotropical lowland forest bird (Lepidothrix coronata) and its implications for historical hypotheses of the origin of Neotropical avian diversity. Molecular Phylogenetics and Evolution. 36: 338-57. PMID 15955514 DOI: 10.1016/j.ympev.2005.01.015  0.353
2003 Burns KJ, Hackett SJ, Klein NK. Phylogenetic relationships of Neotropical honeycreepers and the evolution of feeding morphology Journal of Avian Biology. 34: 360-370. DOI: 10.1111/J.0908-8857.2003.03171.X  0.635
2002 Burns KJ, Hackett SJ, Klein NK. Phylogenetic relationships and morphological diversity in Darwin's finches and their relatives. Evolution; International Journal of Organic Evolution. 56: 1240-52. PMID 12144023 DOI: 10.1111/J.0014-3820.2002.Tb01435.X  0.606
2002 Marks BD, Hackett SJ, Capparella AP. Historical relationships among Neotropical lowland forest areas of endemism as determined by mitochondrial DNA sequence variation within the Wedge-billed Woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus). Molecular Phylogenetics and Evolution. 24: 153-67. PMID 12128035 DOI: 10.1016/S1055-7903(02)00233-6  0.316
2001 Kirchman JJ, Hackett SJ, Goodman SM, Bates JM. Phylogeny and systematics of ground rollers (Brachypteraciidae) of Madagascar Auk. 118: 849-863. DOI: 10.1642/0004-8038(2001)118[0849:Pasogr]2.0.Co;2  0.579
1999 Bates JM, Hackett SJ, Goerck JM. High levels of mitochondrial DNA differentiation in two lineages of antbirds (Drymophila and Hypocnemis) Auk. 116: 1093-1106. DOI: 10.2307/4089688  0.592
1998 Bates JM, Hackett SJ, Cracraft J. Area-relationships in the Neotropical lowlands: An hypothesis based on raw distributions of Passerine birds Journal of Biogeography. 25: 783-793. DOI: 10.1046/J.1365-2699.1998.2540783.X  0.673
1995 Hackett SJ, Griffiths CS, Bates JM, Klein NK. Re: A commentary on the use of sequence data for phylogeny reconstruction. Molecular Phylogenetics and Evolution. 4: 350-6. PMID 8845969 DOI: 10.1006/Mpev.1995.1030  0.529
1993 Burns KJ, Hackett SJ. Nest and Nest-Site Characteristics of a Western Population of Fox Sparrow (Passerella iliaca) The Southwestern Naturalist. 38: 277. DOI: 10.2307/3671433  0.582
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