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Wieslaw Nowak - Publications

Affiliations: 
1984-1989 Physics Nicolaus Copernicus University 
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Walczewska-Szewc K, Nowak W. Structural Determinants of Insulin Release: Disordered N-Terminal Tail of Kir6.2 Affects Potassium Channel Dynamics through Interactions with Sulfonylurea Binding Region in a SUR1 Partner. The Journal of Physical Chemistry. B. PMID 32598150 DOI: 10.1021/Acs.Jpcb.0C02720  0.329
2019 Dąbrowski J, Nowak W, Ptak A. How strong are hydrogen bonds in the peptide model? Physical Chemistry Chemical Physics : Pccp. PMID 31859314 DOI: 10.1039/C9Cp05564A  0.33
2019 Mikulska-Ruminska K, Strzelecki J, Nowak W. Dynamics, nanomechanics and signal transduction in reelin repeats. Scientific Reports. 9: 18974. PMID 31831824 DOI: 10.1038/S41598-019-55461-8  0.346
2019 Carrascoza Mayén JF, Rydzewski J, Szostak N, Blazewicz J, Nowak W. Prebiotic Soup Components Trapped in Montmorillonite Nanoclay Form New Molecules: Car-Parrinello Ab Initio Simulations. Life (Basel, Switzerland). 9. PMID 31167366 DOI: 10.3390/Life9020046  0.325
2018 Rydzewski J, Jakubowski R, Nowak W, Grubmüller H. Kinetics of Huperzine A Dissociation from Acetylcholinesterase via Multiple Unbinding Pathways. Journal of Chemical Theory and Computation. PMID 29715428 DOI: 10.1021/Acs.Jctc.8B00173  0.339
2018 Rydzewski J, Nowak W. Photoinduced transport in an H64Q neuroglobin antidote for carbon monoxide poisoning. The Journal of Chemical Physics. 148: 115101. PMID 29566507 DOI: 10.1063/1.5013659  0.31
2017 Mikulska-Ruminska K, Kulik AJ, Benadiba C, Bahar I, Dietler G, Nowak W. Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD. Scientific Reports. 7: 8852. PMID 28821864 DOI: 10.1038/S41598-017-09482-W  0.36
2017 Rydzewski J, Nowak W. Thermodynamics of camphor migration in cytochrome P450cam by atomistic simulations. Scientific Reports. 7: 7736. PMID 28798338 DOI: 10.1038/S41598-017-07993-0  0.339
2017 Rydzewski J, Nowak W. Ligand diffusion in proteins via enhanced sampling in molecular dynamics. Physics of Life Reviews. PMID 28410930 DOI: 10.1016/J.Plrev.2017.03.003  0.352
2017 Mikulska-Ruminska K, Kulik AJ, Kaya C, BenAdiba C, Dietler G, Nowak W, Bahar I. MechStiff : A New Tool for Evaluating Stress-Induced Dynamics and Application to Cell Adhesion Proteins Biophysical Journal. 112: 45a-46a. DOI: 10.1016/J.Bpj.2016.11.286  0.365
2016 Rydzewski J, Nowak W. Machine Learning Based Dimensionality Reduction Facilitates Ligand Diffusion Paths Assessment: A Case of Cytochrome P450cam. Journal of Chemical Theory and Computation. 12: 2110-2120. PMID 26989997 DOI: 10.1021/Acs.Jctc.6B00212  0.303
2016 Gogolinska A, Jakubowski R, Nowak W. Petri nets formalism facilitates analysis of complex biomolecular structural data Rairo-Operations Research. 50: 401-411. DOI: 10.1051/Ro/2015043  0.339
2015 Rydzewski J, Jakubowski R, Nowak W. Communication: Entropic measure to prevent energy over-minimization in molecular dynamics simulations. Journal of Chemical Physics. 143: 171103-171103. PMID 26547151 DOI: 10.1063/1.4935370  0.303
2015 Rydzewski J, Nowak W. Memetic algorithms for ligand expulsion from protein cavities. Journal of Chemical Physics. 143: 124101-124101. PMID 26428990 DOI: 10.1063/1.4931181  0.346
2014 Strzelecki J, Peplowski L, Lenartowski R, Nowak W, Balter A. Mechanical transition in a highly stretched and torsionally constrained DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 020701. PMID 25353406 DOI: 10.1103/Physreve.89.020701  0.337
2014 Mikulska K, Strzelecki J, Nowak W. Nanomechanics of β-rich proteins related to neuronal disorders studied by AFM, all-atom and coarse-grained MD methods. Journal of Molecular Modeling. 20: 2144. PMID 24562857 DOI: 10.1007/S00894-014-2144-5  0.384
2013 Gogolinska A, Nowak W. Molecular basis of lateral force spectroscopy nano-diagnostics: computational unbinding of autism related chemokine MCP-1 from IgG antibody. Journal of Molecular Modeling. 19: 4773-80. PMID 24061853 DOI: 10.1007/S00894-013-1972-Z  0.336
2013 Miszta P, Basak SC, Natarajan R, Nowak W. How computational studies of mosquito repellents contribute to the control of vector Borne Diseases. Current Computer-Aided Drug Design. 9: 300-7. PMID 24010929 DOI: 10.2174/15734099113099990018  0.308
2013 ż DBa, ż PWa, Clark T, Puzyn T, Pepłowski Ł, Nowak W. Statistical properties of spectra of chloronaphthalenes Journal of Mathematical Chemistry. 51: 857-867. DOI: 10.1007/S10910-012-0117-4  0.318
2012 Duch W, Nowak W, Meller J, Osiński G, Dobosz K, Mikołajewski D, Wójcik GM. COMPUTATIONAL APPROACH TO UNDERSTANDING AUTISM SPECTRUM DISORDERS Computer Science. 13: 47. DOI: 10.7494/Csci.2012.13.2.47  0.537
2012 Jasiński A, Mikulska K, Krajnik B, Mackowski S, Nowak W. Dynamics of Protein Elements of Hybrid Nanostructures - Molecular Dynamics Simulations of Light Harvesting Peridinin-Chlorophyll a-Protein Model Acta Physica Polonica A. 122: 284-288. DOI: 10.12693/Aphyspola.122.284  0.357
2012 Mikulska K, Strzelecki J, Balter A, Nowak W. Nanomechanical unfolding of α-neurexin: A major component of the synaptic junction Chemical Physics Letters. 521: 134-137. DOI: 10.1016/J.Cplett.2011.11.033  0.318
2011 Mikulska K, Pepłowski L, Nowak W. Nanomechanics of Ig-like domains of human contactin (BIG-2). Journal of Molecular Modeling. 17: 2313-23. PMID 21445711 DOI: 10.1007/S00894-011-1010-Y  0.344
2011 Pepłowski L, Sikora M, Nowak W, Cieplak M. Molecular jamming--the cystine slipknot mechanical clamp in all-atom simulations. The Journal of Chemical Physics. 134: 085102. PMID 21361557 DOI: 10.1063/1.3553801  0.366
2011 Strzelecki JW, Strzelecka J, Mikulska K, Tszydel M, Balter A, Nowak W. Nanomechanics of new materials — AFM and computer modelling studies of trichoptera silk Central European Journal of Physics. 9: 482-491. DOI: 10.2478/S11534-010-0105-X  0.312
2008 Kubiak K, Nowak W. Molecular dynamics simulations of the photoactive protein nitrile hydratase. Biophysical Journal. 94: 3824-38. PMID 18234830 DOI: 10.1529/Biophysj.107.116665  0.348
2008 Peplowski L, Kubiak K, Nowak W. Mechanical aspects of nitrile hydratase enzymatic activity. Steered molecular dynamics simulations of Pseudonocardia thermophila JCM 3095 Chemical Physics Letters. 467: 144-149. DOI: 10.1016/J.Cplett.2008.10.072  0.351
2007 Basak SC, Natarajan R, Nowak W, Miszta P, Klun JA. Three dimensional structure-activity relationships (3D-QSAR) for insect repellency of diastereoisomeric compounds: a hierarchical molecular overlay approach. Sar and Qsar in Environmental Research. 18: 237-50. PMID 17514568 DOI: 10.1080/10629360701303784  0.308
2007 Orlowski S, Nowak W. Locally enhanced sampling molecular dynamics study of the dioxygen transport in human cytoglobin. Journal of Molecular Modeling. 13: 715-23. PMID 17503097 DOI: 10.1007/S00894-007-0203-X  0.33
2007 Peplowski L, Kubiak K, Nowak W. Insights into catalytic activity of industrial enzyme Co-nitrile hydratase. Docking studies of nitriles and amides. Journal of Molecular Modeling. 13: 725-30. PMID 17333306 DOI: 10.1007/S00894-007-0181-Z  0.303
2007 Orlowski S, Nowak W. Oxygen diffusion in minihemoglobin from Cerebratulus lacteus: a locally enhanced sampling study Theoretical Chemistry Accounts. 117: 253-258. DOI: 10.1007/S00214-006-0139-8  0.337
2004 Lee G, Nowak W, Jaroniec J, Zhang Q, Marszalek PE. Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides. Biophysical Journal. 87: 1456-65. PMID 15345528 DOI: 10.1529/Biophysj.104.042879  0.323
2004 Lu Z, Nowak W, Lee G, Marszalek PE, Yang W. Elastic properties of single amylose chains in water: a quantum mechanical and AFM study. Journal of the American Chemical Society. 126: 9033-41. PMID 15264836 DOI: 10.1021/Ja031940X  0.351
2004 Lee G, Nowak W, Jaroniec J, Zhang Q, Marszalek PE. Nanomechanical control of glucopyranose rotamers. Journal of the American Chemical Society. 126: 6218-9. PMID 15149204 DOI: 10.1021/Ja0491984  0.346
2003 Kubiak K, Kowalska M, Nowak W. Molecular dynamics study of early events during photooxidation of eye lens protein γB-crystallin Journal of Molecular Structure-Theochem. 630: 315-325. DOI: 10.1016/S0166-1280(03)00161-1  0.331
2002 Nowak W, Ohtsuka Y, Hasegawa J, Nakatsuji H. Density functional study on geometry and electronic structure of nitrile hydratase active site model International Journal of Quantum Chemistry. 90: 1174-1187. DOI: 10.1002/Qua.10332  0.305
1998 Nowak W. Computer Modelling Of Dynamics Of Ser92X Deoxymyoglobin Mutants Computational Biology and Chemistry. 22: 49-59. PMID 9570112 DOI: 10.1016/S0097-8485(97)00045-4  0.316
1997 Nowak W, Wojtczak A. Quantum chemical modelling of thyroid hormone analogues Journal of Molecular Structure-Theochem. 419: 121-131. DOI: 10.1016/S0166-1280(97)00251-0  0.307
1997 Nowak W. Molecular dynamics simulations of human deoxymyoglobin with a modified proximal side of the heme group Journal of Molecular Structure-Theochem. 537-542. DOI: 10.1016/S0166-1280(96)04964-0  0.364
1996 Nowak W, Wierzbowska M. A theoretical study of geometry and transition moment directions of flexible fluorescent probes—acetoxy derivatives of phenylanthracene Journal of Molecular Structure-Theochem. 368: 223-234. DOI: 10.1016/S0166-1280(96)90567-9  0.308
1983 Nowak W, Karwowski J, Kłobukowski M. Relativistic and correlation corrections to electron affinities of alkali and halogen atoms Theoretica Chimica Acta. 63: 313-316. DOI: 10.1007/Bf01151608  0.609
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