Jonathan Marchini - Publications

Affiliations: 
Department of statistics University of Oxford, Oxford, United Kingdom 

79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sun KY, Bai X, Chen S, Bao S, Zhang C, Kapoor M, Backman J, Joseph T, Maxwell E, Mitra G, Gorovits A, Mansfield A, Boutkov B, Gokhale S, Habegger L, ... ... Marchini J, et al. A deep catalogue of protein-coding variation in 983,578 individuals. Nature. PMID 38768635 DOI: 10.1038/s41586-024-07556-0  0.347
2023 Ziyatdinov A, Torres J, Alegre-Díaz J, Backman J, Mbatchou J, Turner M, Gaynor SM, Joseph T, Zou Y, Liu D, Wade R, Staples J, Panea R, Popov A, Bai X, ... ... Marchini J, et al. Genotyping, sequencing and analysis of 140,000 adults from Mexico City. Nature. PMID 37821707 DOI: 10.1038/s41586-023-06595-3  0.4
2023 Sun KY, Bai X, Chen S, Bao S, Kapoor M, Backman J, Joseph T, Maxwell E, Mitra G, Gorovits A, Mansfield A, Boutkov B, Gokhale S, Habegger L, Marcketta A, ... ... Marchini J, et al. A deep catalog of protein-coding variation in 985,830 individuals. Biorxiv : the Preprint Server For Biology. PMID 37214792 DOI: 10.1101/2023.05.09.539329  0.302
2022 Kessler MD, Damask A, O'Keeffe S, Banerjee N, Li D, Watanabe K, Marketta A, Van Meter M, Semrau S, Horowitz J, Tang J, Kosmicki JA, Rajagopal VM, Zou Y, Houvras Y, ... ... Marchini J, et al. Common and rare variant associations with clonal haematopoiesis phenotypes. Nature. PMID 36450978 DOI: 10.1038/s41586-022-05448-9  0.32
2021 Backman JD, Li AH, Marcketta A, Sun D, Mbatchou J, Kessler MD, Benner C, Liu D, Locke AE, Balasubramanian S, Yadav A, Banerjee N, Gillies C, Damask A, Liu S, ... ... Marchini J, et al. Exome sequencing and analysis of 454,787 UK Biobank participants. Nature. PMID 34662886 DOI: 10.1038/s41586-021-04103-z  0.312
2021 Sesia M, Bates S, Candès E, Marchini J, Sabatti C. False discovery rate control in genome-wide association studies with population structure. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34580220 DOI: 10.1073/pnas.2105841118  0.402
2021 Kosmicki JA, Horowitz JE, Banerjee N, Lanche R, Marcketta A, Maxwell E, Bai X, Sun D, Backman JD, Sharma D, Kury FSP, Kang HM, O'Dushlaine C, Yadav A, Mansfield AJ, ... ... Marchini J, et al. Pan-ancestry exome-wide association analyses of COVID-19 outcomes in 586,157 individuals. American Journal of Human Genetics. PMID 34115965 DOI: 10.1016/j.ajhg.2021.05.017  0.33
2021 Mbatchou J, Barnard L, Backman J, Marcketta A, Kosmicki JA, Ziyatdinov A, Benner C, O'Dushlaine C, Barber M, Boutkov B, Habegger L, Ferreira M, Baras A, Reid J, Abecasis G, ... ... Marchini J, et al. Computationally efficient whole-genome regression for quantitative and binary traits. Nature Genetics. PMID 34017140 DOI: 10.1038/s41588-021-00870-7  0.308
2020 Rubinacci S, Delaneau O, Marchini J. Genotype imputation using the Positional Burrows Wheeler Transform. Plos Genetics. 16: e1009049. PMID 33196638 DOI: 10.1371/journal.pgen.1009049  0.666
2020 Van Hout CV, Tachmazidou I, Backman JD, Hoffman JD, Liu D, Pandey AK, Gonzaga-Jauregui C, Khalid S, Ye B, Banerjee N, Li AH, O'Dushlaine C, Marcketta A, Staples J, Schurmann C, ... ... Marchini J, et al. Exome sequencing and characterization of 49,960 individuals in the UK Biobank. Nature. PMID 33087929 DOI: 10.1038/s41586-020-2853-0  0.373
2020 Kerin M, Marchini J. Inferring Gene-by-Environment Interactions with a Bayesian Whole-Genome Regression Model. American Journal of Human Genetics. PMID 32888427 DOI: 10.1016/J.Ajhg.2020.08.009  0.408
2020 Cai N, Bigdeli TB, Kretzschmar WW, Li Y, Liang J, Hu J, Peterson RE, Bacanu S, Webb BT, Riley B, Li Q, Marchini J, Mott R, Kendler KS, Flint J. Retraction Note: 11,670 whole-genome sequences representative of the Han Chinese population from the CONVERGE project. Scientific Data. 7: 123. PMID 32300216 DOI: 10.1038/S41597-020-0430-X  0.37
2019 Delaneau O, Zagury JF, Robinson MR, Marchini JL, Dermitzakis ET. Accurate, scalable and integrative haplotype estimation. Nature Communications. 10: 5436. PMID 31780650 DOI: 10.1038/S41467-019-13225-Y  0.764
2019 Wiberg A, Ng M, Al Omran Y, Alfaro-Almagro F, McCarthy P, Marchini J, Bennett DL, Smith S, Douaud G, Furniss D. Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics. Brain : a Journal of Neurology. PMID 31504236 DOI: 10.1093/Brain/Awz257  0.409
2019 Jung M, Wells D, Rusch J, Ahmad S, Marchini J, Myers SR, Conrad DF. Unified single-cell analysis of testis gene regulation and pathology in 5 mouse strains. Elife. 8. PMID 31237565 DOI: 10.7554/Elife.43966  0.347
2018 Bycroft C, Freeman C, Petkova D, Band G, Elliott LT, Sharp K, Motyer A, Vukcevic D, Delaneau O, O'Connell J, Cortes A, Welsh S, Young A, Effingham M, McVean G, ... ... Marchini J, et al. The UK Biobank resource with deep phenotyping and genomic data. Nature. 562: 203-209. PMID 30305743 DOI: 10.1038/S41586-018-0579-Z  0.718
2018 Elliott LT, Sharp K, Alfaro-Almagro F, Shi S, Miller KL, Douaud G, Marchini J, Smith SM. Genome-wide association studies of brain imaging phenotypes in UK Biobank. Nature. 562: 210-216. PMID 30305740 DOI: 10.1038/S41586-018-0571-7  0.343
2018 Mahajan A, Taliun D, Thurner M, Robertson NR, Torres JM, Rayner NW, Payne AJ, Steinthorsdottir V, Scott RA, Grarup N, Cook JP, Schmidt EM, Wuttke M, Sarnowski C, Mägi R, ... ... Marchini J, et al. Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps. Nature Genetics. PMID 30297969 DOI: 10.1038/S41588-018-0241-6  0.398
2018 Wang DR, Agosto-Pérez FJ, Chebotarov D, Shi Y, Marchini J, Fitzgerald M, McNally KL, Alexandrov N, McCouch SR. An imputation platform to enhance integration of rice genetic resources. Nature Communications. 9: 3519. PMID 30158584 DOI: 10.1038/S41467-018-05538-1  0.472
2018 Wray NR, Ripke S, Mattheisen M, Trzaskowski M, Byrne EM, Abdellaoui A, Adams MJ, Agerbo E, Air TM, Andlauer TMF, Bacanu SA, Bækvad-Hansen M, Beekman AFT, Bigdeli TB, Binder EB, ... ... Marchini J, et al. Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression. Nature Genetics. PMID 29700475 DOI: 10.1038/S41588-018-0090-3  0.319
2018 Mahajan A, Wessel J, Willems SM, Zhao W, Robertson NR, Chu AY, Gan W, Kitajima H, Taliun D, Rayner NW, Guo X, Lu Y, Li M, Jensen RA, Hu Y, ... ... Marchini J, et al. Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes. Nature Genetics. 50: 559-571. PMID 29632382 DOI: 10.1038/S41588-018-0084-1  0.388
2017 Justice AE, Winkler TW, Feitosa MF, Graff M, Fisher VA, Young K, Barata L, Deng X, Czajkowski J, Hadley D, Ngwa JS, Ahluwalia TS, Chu AY, Heard-Costa NL, Lim E, ... ... Marchini J, et al. Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits. Nature Communications. 8: 14977. PMID 28443625 DOI: 10.1038/Ncomms14977  0.383
2017 Cai N, Bigdeli TB, Kretzschmar WW, Li Y, Liang J, Hu J, Peterson RE, Bacanu S, Webb BT, Riley B, Li Q, Marchini J, Mott R, Kendler KS, Flint J. 11,670 whole-genome sequences representative of the Han Chinese population from the CONVERGE project. Scientific Data. 4: 170011. PMID 28195579 DOI: 10.1038/Sdata.2017.11  0.512
2016 Astle WJ, Elding H, Jiang T, Allen D, Ruklisa D, Mann AL, Mead D, Bouman H, Riveros-Mckay F, Kostadima MA, Lambourne JJ, Sivapalaratnam S, Downes K, Kundu K, Bomba L, ... ... Marchini J, et al. The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease. Cell. 167: 1415-1429.e19. PMID 27863252 DOI: 10.1016/J.Cell.2016.10.042  0.679
2016 Amos CI, Dennis J, Wang Z, Byun J, Schumacher FR, Gayther SA, Casey G, Hunter DJ, Sellers TA, Gruber SB, Dunning AM, Michailidou K, Fachal L, Doheny K, Spurdle AB, ... ... Marchini J, et al. The OncoArray Consortium: a Network for Understanding the Genetic Architecture of Common Cancers. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 27697780 DOI: 10.1158/1055-9965.Epi-16-0106  0.429
2016 Hore V, Viñuela A, Buil A, Knight J, McCarthy MI, Small K, Marchini J. Tensor decomposition for multiple-tissue gene expression experiments. Nature Genetics. PMID 27479908 DOI: 10.1038/Ng.3624  0.384
2016 O'Connell J, Sharp K, Shrine N, Wain L, Hall I, Tobin M, Zagury JF, Delaneau O, Marchini J. Haplotype estimation for biobank-scale data sets. Nature Genetics. PMID 27270105 DOI: 10.1038/Ng.3583  0.732
2016 Sharp K, Kretzschmar W, Delaneau O, Marchini J. Phasing for medical sequencing using rare variants and large haplotype reference panels. Bioinformatics (Oxford, England). 32: 1974-80. PMID 27153703 DOI: 10.1093/Bioinformatics/Btw065  0.708
2016 Dahl A, Iotchkova V, Baud A, Johansson Å, Gyllensten U, Soranzo N, Mott R, Kranis A, Marchini J. A multiple-phenotype imputation method for genetic studies. Nature Genetics. 48: 466-72. PMID 26901065 DOI: 10.1038/Ng.3513  0.47
2016 Cai N, Bigdeli T, Kretzschmar W, Li Y, Liang J, Song L, Hu J, Li Q, Jin W, Hu Z, Wang G, Wang L, Qian P, Liu Y, Jiang T, ... ... Marchini J, et al. CONVERGE dataset: 12,000 whole-genome sequences representative of the Han Chinese population Gigascience. 5. DOI: 10.1186/S13742-016-0123-8  0.396
2015 Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR. A global reference for human genetic variation. Nature. 526: 68-74. PMID 26432245 DOI: 10.1038/Nature15393  0.448
2015 Wain LV, Shrine N, Miller S, Jackson VE, Ntalla I, Artigas MS, Billington CK, Kheirallah AK, Allen R, Cook JP, Probert K, Obeidat M, Bossé Y, Hao K, Postma DS, ... ... Marchini J, et al. Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank. The Lancet. Respiratory Medicine. PMID 26423011 DOI: 10.1016/S2213-2600(15)00283-0  0.627
2015 Huang J, Howie B, McCarthy S, Memari Y, Walter K, Min JL, Danecek P, Malerba G, Trabetti E, Zheng HF, Gambaro G, Richards JB, Durbin R, Timpson NJ, ... Marchini J, et al. Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel. Nature Communications. 6: 8111. PMID 26368830 DOI: 10.1038/Ncomms9111  0.529
2015 Martin HC, Christ R, Hussin JG, O'Connell J, Gordon S, Mbarek H, Hottenga JJ, McAloney K, Willemsen G, Gasparini P, Pirastu N, Montgomery GW, Navarro P, Soranzo N, Toniolo D, ... ... Marchini J, et al. Multicohort analysis of the maternal age effect on recombination. Nature Communications. 6: 7846. PMID 26242864 DOI: 10.1038/Ncomms8846  0.335
2015 Cai N, Bigdeli TB, Kretzschmar W, Lei Y, Liang J, Song L, Hu J, Li Q, Jin W, Hu Z, Wang G, Wang L, Qian P, Liu Y, Jiang T, ... ... Marchini J, et al. Sparse whole-genome sequencing identifies two loci for major depressive disorder Nature. 523: 588-591. DOI: 10.1038/Nature14659  0.358
2014 Delaneau O, Marchini J. Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel. Nature Communications. 5: 3934. PMID 25653097 DOI: 10.1038/Ncomms4934  0.739
2014 O'Connell J, Gurdasani D, Delaneau O, Pirastu N, Ulivi S, Cocca M, Traglia M, Huang J, Huffman JE, Rudan I, McQuillan R, Fraser RM, Campbell H, Polasek O, Asiki G, ... ... Marchini J, et al. A general approach for haplotype phasing across the full spectrum of relatedness. Plos Genetics. 10: e1004234. PMID 24743097 DOI: 10.1371/Journal.Pgen.1004234  0.748
2013 Stephens SH, Hartz SM, Hoft NR, Saccone NL, Corley RC, Hewitt JK, Hopfer CJ, Breslau N, Coon H, Chen X, Ducci F, Dueker N, Franceschini N, Frank J, Han Y, ... ... Marchini J, et al. Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking. Genetic Epidemiology. 37: 846-59. PMID 24186853 DOI: 10.1002/Gepi.21760  0.319
2013 Delaneau O, Howie B, Cox AJ, Zagury JF, Marchini J. Haplotype estimation using sequencing reads. American Journal of Human Genetics. 93: 687-96. PMID 24094745 DOI: 10.1016/J.Ajhg.2013.09.002  0.747
2013 Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J, MacArthur DG, ... ... Marchini J, et al. The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes. Genome Research. 23: 749-61. PMID 23478400 DOI: 10.1101/Gr.148718.112  0.485
2013 Delaneau O, Zagury JF, Marchini J. Improved whole-chromosome phasing for disease and population genetic studies. Nature Methods. 10: 5-6. PMID 23269371 DOI: 10.1038/Nmeth.2307  0.717
2013 Churchhouse C, Marchini J. Multiway admixture deconvolution using phased or unphased ancestral panels. Genetic Epidemiology. 37: 1-12. PMID 23136122 DOI: 10.1002/Gepi.21692  0.457
2013 Menelaou A, Marchini J. Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold. Bioinformatics (Oxford, England). 29: 84-91. PMID 23093610 DOI: 10.1093/Bioinformatics/Bts632  0.504
2013 Wang J, Bansal AT, Martin M, Germer S, Benayed R, Essioux L, Lee JS, Begovich A, Hemmings A, Kenwright A, Taylor KE, Upmanyu R, Cutler P, Harari O, Marchini J, et al. Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis. The Pharmacogenomics Journal. 13: 235-41. PMID 22491018 DOI: 10.1038/Tpj.2012.8  0.36
2012 Hancock DB, Artigas MS, Gharib SA, Henry A, Manichaikul A, Ramasamy A, Loth DW, Imboden M, Koch B, McArdle WL, Smith AV, Smolonska J, Sood A, Tang W, Wilk JB, ... ... Marchini J, et al. Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. Plos Genetics. 8: e1003098. PMID 23284291 DOI: 10.1371/Journal.Pgen.1003098  0.401
2012 Hartz SM, Short SE, Saccone NL, Culverhouse R, Chen L, Schwantes-An TH, Coon H, Han Y, Stephens SH, Sun J, Chen X, Ducci F, Dueker N, Franceschini N, Frank J, ... ... Marchini J, et al. Increased genetic vulnerability to smoking at CHRNA5 in early-onset smokers. Archives of General Psychiatry. 69: 854-60. PMID 22868939 DOI: 10.1001/Archgenpsychiatry.2012.124  0.327
2012 O'Connell J, Marchini J. Joint genotype calling with array and sequence data. Genetic Epidemiology. 36: 527-37. PMID 22821426 DOI: 10.1002/Gepi.21657  0.519
2012 Howie B, Fuchsberger C, Stephens M, Marchini J, Abecasis GR. Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nature Genetics. 44: 955-9. PMID 22820512 DOI: 10.1038/Ng.2354  0.541
2011 Howie B, Marchini J, Stephens M. Genotype imputation with thousands of genomes. G3 (Bethesda, Md.). 1: 457-70. PMID 22384356 DOI: 10.1534/G3.111.001198  0.526
2011 Delaneau O, Marchini J, Zagury JF. A linear complexity phasing method for thousands of genomes. Nature Methods. 9: 179-81. PMID 22138821 DOI: 10.1038/Nmeth.1785  0.765
2011 Soler Artigas M, Wain LV, Repapi E, Obeidat M, Sayers I, Burton PR, Johnson T, Zhao JH, Albrecht E, Dominiczak AF, Kerr SM, Smith BH, Cadby G, Hui J, Palmer LJ, ... ... Marchini J, et al. Effect of five genetic variants associated with lung function on the risk of chronic obstructive lung disease, and their joint effects on lung function. American Journal of Respiratory and Critical Care Medicine. 184: 786-95. PMID 21965014 DOI: 10.1164/Rccm.201102-0192Oc  0.382
2011 Soler Artigas M, Loth DW, Wain LV, Gharib SA, Obeidat M, Tang W, Zhai G, Zhao JH, Smith AV, Huffman JE, Albrecht E, Jackson CM, Evans DM, Cadby G, Fornage M, ... ... Marchini J, et al. Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. Nature Genetics. 43: 1082-90. PMID 21946350 DOI: 10.1038/Ng.941  0.332
2011 Cardin N, Holmes C, Donnelly P, Marchini J. Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array. Genetic Epidemiology. 35: 536-48. PMID 21769931 DOI: 10.1002/Gepi.20604  0.416
2011 Tomlinson IP, Carvajal-Carmona LG, Dobbins SE, Tenesa A, Jones AM, Howarth K, Palles C, Broderick P, Jaeger EE, Farrington S, Lewis A, Prendergast JG, Pittman AM, Theodoratou E, Olver B, ... ... Marchini J, et al. Multiple common susceptibility variants near BMP pathway loci GREM1, BMP4, and BMP2 explain part of the missing heritability of colorectal cancer. Plos Genetics. 7: e1002105. PMID 21655089 DOI: 10.1371/Journal.Pgen.1002105  0.415
2011 Su Z, Marchini J, Donnelly P. HAPGEN2: simulation of multiple disease SNPs. Bioinformatics (Oxford, England). 27: 2304-5. PMID 21653516 DOI: 10.1093/Bioinformatics/Btr341  0.414
2011 Southam L, Panoutsopoulou K, Rayner NW, Chapman K, Durrant C, Ferreira T, Arden N, Carr A, Deloukas P, Doherty M, Loughlin J, McCaskie A, Ollier WE, Ralston S, Spector TD, ... ... Marchini J, et al. The effect of genome-wide association scan quality control on imputation outcome for common variants. European Journal of Human Genetics : Ejhg. 19: 610-4. PMID 21267008 DOI: 10.1038/Ejhg.2010.242  0.445
2011 Ferreira T, Marchini J. Modeling interactions with known risk loci-a Bayesian model averaging approach. Annals of Human Genetics. 75: 1-9. PMID 21118191 DOI: 10.1111/J.1469-1809.2010.00618.X  0.454
2010 Marchini J, Howie B. Genotype imputation for genome-wide association studies. Nature Reviews. Genetics. 11: 499-511. PMID 20517342 DOI: 10.1038/Nrg2796  0.463
2010 Liu JZ, Tozzi F, Waterworth DM, Pillai SG, Muglia P, Middleton L, Berrettini W, Knouff CW, Yuan X, Waeber G, Vollenweider P, Preisig M, Wareham NJ, Zhao JH, Loos RJ, ... ... Marchini J, et al. Meta-analysis and imputation refines the association of 15q25 with smoking quantity. Nature Genetics. 42: 436-40. PMID 20418889 DOI: 10.1038/Ng.572  0.417
2010 Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, Holmes C, Marchini JL, Stirrups K, Tobin MD, et al. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature. 464: 713-20. PMID 20360734 DOI: 10.1038/Nature08979  0.37
2009 Howie BN, Donnelly P, Marchini J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. Plos Genetics. 5: e1000529. PMID 19543373 DOI: 10.1371/Journal.Pgen.1000529  0.513
2009 Spencer CCA, Su Z, Donnelly P, Marchini J. Designing genome-wide association studies: Sample size, power, imputation, and the choice of genotyping chip Plos Genetics. 5. PMID 19492015 DOI: 10.1371/Journal.Pgen.1000477  0.463
2009 Jallow M, Teo YY, Small KS, Rockett KA, Deloukas P, Clark TG, Kivinen K, Bojang KA, Conway DJ, Pinder M, Sirugo G, Sisay-Joof F, Usen S, Auburn S, Bumpstead SJ, ... ... Marchini J, et al. Genome-wide and fine-resolution association analysis of malaria in West Africa. Nature Genetics. 41: 657-65. PMID 19465909 DOI: 10.1038/Ng.388  0.458
2009 Su Z, Cardin N, Donnelly P, Marchini J. A Bayesian Method for Detecting and Characterizing Allelic Heterogeneity and Boosting Signals in Genome-Wide Association Studies Statistical Science. 24: 430-450. DOI: 10.1214/09-Sts311  0.48
2009 Zheng G, Marchini J, Geller NL. Introduction to the Special Issue: Genome-Wide Association Studies Statistical Science. 24: 387-387. DOI: 10.1214/09-Sts310  0.378
2008 Marchini J, Howie B. Comparing algorithms for genotype imputation. American Journal of Human Genetics. 83: 535-9; author reply . PMID 18940314 DOI: 10.1016/J.Ajhg.2008.09.007  0.427
2008 Barnes C, Plagnol V, Fitzgerald T, Redon R, Marchini J, Clayton D, Hurles ME. A robust statistical method for case-control association testing with copy number variation. Nature Genetics. 40: 1245-52. PMID 18776912 DOI: 10.1038/Ng.206  0.425
2008 Barrett JC, Hansoul S, Nicolae DL, Cho JH, Duerr RH, Rioux JD, Brant SR, Silverberg MS, Taylor KD, Barmada MM, Bitton A, Dassopoulos T, Datta LW, Green T, Griffiths AM, ... ... Marchini J, et al. Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. Nature Genetics. 40: 955-62. PMID 18587394 DOI: 10.1038/Ng.175  0.438
2007 Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, Frazer KA, Ballinger DG, ... ... Marchini J, et al. Genome-wide detection and characterization of positive selection in human populations. Nature. 449: 913-8. PMID 17943131 DOI: 10.1038/Nature06250  0.434
2007 Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, ... ... Marchini J, et al. A second generation human haplotype map of over 3.1 million SNPs. Nature. 449: 851-61. PMID 17943122 DOI: 10.1038/Nature06258  0.473
2007 Marchini J, Howie B, Myers S, McVean G, Donnelly P. A new multipoint method for genome-wide association studies by imputation of genotypes. Nature Genetics. 39: 906-13. PMID 17572673 DOI: 10.1038/Ng2088  0.513
2007 Eyheramendy S, Marchini J, McVean G, Myers S, Donnelly P. A model-based approach to capture genetic variation for future association studies. Genome Research. 17: 88-95. PMID 17095708 DOI: 10.1101/Gr.5675406  0.503
2006 Evans DM, Marchini J, Morris AP, Cardon LR. Two-stage two-locus models in genome-wide association. Plos Genetics. 2: e157. PMID 17002500 DOI: 10.1371/Journal.Pgen.0020157  0.431
2006 de Bakker PI, McVean G, Sabeti PC, Miretti MM, Green T, Marchini J, Ke X, Monsuur AJ, Whittaker P, Delgado M, Morrison J, Richardson A, Walsh EC, Gao X, Galver L, et al. A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nature Genetics. 38: 1166-72. PMID 16998491 DOI: 10.1038/Ng1885  0.393
2006 Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P. A comparison of phasing algorithms for trios and unrelated individuals. American Journal of Human Genetics. 78: 437-50. PMID 16465620 DOI: 10.1086/500808  0.487
2005 Marchini J, Donnelly P, Cardon LR. Genome-wide strategies for detecting multiple loci that influence complex diseases. Nature Genetics. 37: 413-7. PMID 15793588 DOI: 10.1038/Ng1537  0.463
2004 Marchini J, Cardon LR, Phillips MS, Donnelly P. The effects of human population structure on large genetic association studies Nature Genetics. 36: 512-517. PMID 15052271 DOI: 10.1038/Ng1337  0.42
2004 Marchini J, Cardon LR, Phillips MS, Donnelly P. Reply to "Genomic Control to the extreme" Nature Genetics. 36: 1131-1131. DOI: 10.1038/Ng1104-1131  0.336
2003 Belmont JW, Hardenbol P, Willis TD, Yu F, Yang H, Ch'Ang LY, Huang W, Liu B, Shen Y, Tam PKH, Tsui LC, Waye MMY, Wong JTF, Zeng C, Zhang Q, ... ... Marchini J, et al. The international HapMap project Nature. 426: 789-796. DOI: 10.1038/Nature02168  0.432
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