Alfredo E. Cardenas, Ph.D.
Affiliations: | 2000 | University of Pittsburgh, Pittsburgh, PA, United States |
Area:
Physical Chemistry, General BiophysicsGoogle:
"Alfredo Cardenas"Parents
Sign in to add mentorRob D. Coalson | grad student | 2000 | University of Pittsburgh | |
(Theoretical studies in multidimensional quantum systems and ionic permeation through biological channels.) |
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Publications
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Ma P, Cardenas AE, Chaudhari M, et al. (2020) Translocation of Anthrax Lethal Factor: Perspectives from Atomic Molecular Dynamics Simulations Biophysical Journal. 118: 299a |
Cardenas AE, Anderson CM, Webb LJ, et al. (2019) Partition of Positively and Negatively Charged Tryptophan Ions in Membranes with Inverted Phospholipid Heads: Simulations and Experiments. The Journal of Physical Chemistry. B |
Ma P, Cardenas AE, Chaudhari M, et al. (2019) Early Translocation of Anthrax Lethal Factor: Kinetics from Molecular Dynamics Simulations and Milestoning Theory Biophysical Journal. 116: 436a |
Valentine ML, Cardenas AE, Elber R, et al. (2019) Dynamic Effects of Calcium on Membranes Containing Phosphatidylserine Biophysical Journal. 116: 215a-216a |
Anderson CM, Cardenas AE, Elber R, et al. (2018) Preferential Equilibrium Partitioning of Positively Charged Tryptophan into Phosphatidylcholine Bilayer Membranes. The Journal of Physical Chemistry. B |
Ma P, Cardenas AE, Chaudhari MI, et al. (2018) Probing Translocation in Mutants of the Anthrax Channel: Atomically Detailed Simulations with Milestoning. The Journal of Physical Chemistry. B |
Cardenas AE, Shrestha R, Webb LJ, et al. (2015) Membrane Permeation of a Peptide: It Is Better to be Positive. The Journal of Physical Chemistry. B. 119: 6412-20 |
Shrestha R, Cardenas AE, Elber R, et al. (2015) Measurement of the membrane dipole electric field in DMPC vesicles using vibrational shifts of p-cyanophenylalanine and molecular dynamics simulations. The Journal of Physical Chemistry. B. 119: 2869-76 |
Viswanath S, Kreuzer SM, Cardenas AE, et al. (2013) Analyzing milestoning networks for molecular kinetics: definitions, algorithms, and examples. The Journal of Chemical Physics. 139: 174105 |
Ruymgaart AP, Cardenas AE, Elber R. (2011) MOIL-opt: Energy-Conserving Molecular Dynamics on a GPU/CPU system. Journal of Chemical Theory and Computation. 7: 3072-3082 |