Rong Fan, Ph.D. - Publications

Affiliations: 
2001-2006 University of California, Berkeley, Berkeley, CA, United States 
 2010- Biomedical Engineering Yale University, New Haven, CT 
Area:
Materials Chemistry, Biomedical Engineering

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bai Z, Deng Y, Kim D, Chen Z, Xiao Y, Fan R. An Integrated Dielectrophoresis -Trapping and Nanowell Transfer Approach to Enable Double-Sub-Poisson Single-Cell RNA-Sequencing. Acs Nano. PMID 32437127 DOI: 10.1021/Acsnano.0C02953  0.377
2020 Finck A, Fan R. Single-Cell Cytokine Analysis to Characterize CAR-T Cell Activation. Methods in Molecular Biology (Clifton, N.J.). 2097: 67-81. PMID 31776919 DOI: 10.1007/978-1-0716-0203-4_4  0.357
2019 Chen Z, Lu Y, Zhang K, Xiao Y, Lu J, Fan R. Multiplexed, Sequential Secretion Analysis of the Same Single Cells Reveals Distinct Effector Response Dynamics Dependent on the Initial Basal State. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 6: 1801361. PMID 31065513 DOI: 10.1002/Advs.201801361  0.483
2019 Xiao Y, Kim D, Dura B, Zhang K, Yan R, Li H, Han E, Ip J, Zou P, Liu J, Chen AT, Vortmeyer AO, Zhou J, Fan R. Ex vivo Dynamics of Human Glioblastoma Cells in a Microvasculature-on-a-Chip System Correlates with Tumor Heterogeneity and Subtypes. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 6: 1801531. PMID 31016107 DOI: 10.1002/Advs.201801531  0.32
2019 Chen Z, Chen JJ, Fan R. Single-Cell Protein Secretion Detection and Profiling. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 30978293 DOI: 10.1146/Annurev-Anchem-061318-115055  0.383
2019 Wang N, Lu Y, Chen Z, Fan R. Multiplexed PCR-Free Detection of MicroRNAs in Single Cancer Cells Using a DNA-Barcoded Microtrough Array Chip. Micromachines. 10. PMID 30934734 DOI: 10.3390/Mi10040215  0.469
2019 Deng Y, Finck A, Fan R. Single-Cell Omics Analyses Enabled by Microchip Technologies. Annual Review of Biomedical Engineering. PMID 30883211 DOI: 10.1146/Annurev-Bioeng-060418-052538  0.354
2019 Codina A, Renauer PA, Wang G, Chow RD, Park JJ, Ye H, Zhang K, Dong MB, Gassaway B, Ye L, Errami Y, Shen L, Chang A, Jain D, Herbst RS, ... ... Fan R, et al. Convergent Identification and Interrogation of Tumor-Intrinsic Factors that Modulate Cancer Immunity In Vivo. Cell Systems. PMID 30797773 DOI: 10.1016/J.Cels.2019.01.004  0.316
2019 Chen Z, Lu Y, Zhang K, Xiao Y, Lu J, Fan R. Single‐Cell Cytokine Assays: Multiplexed, Sequential Secretion Analysis of the Same Single Cells Reveals Distinct Effector Response Dynamics Dependent on the Initial Basal State (Adv. Sci. 9/2019) Advanced Science. 6: 1970055. DOI: 10.1002/Advs.201970055  0.431
2018 Dura B, Choi JY, Zhang K, Damsky W, Thakral D, Bosenberg M, Craft J, Fan R. scFTD-seq: freeze-thaw lysis based, portable approach toward highly distributed single-cell 3' mRNA profiling. Nucleic Acids Research. PMID 30462277 DOI: 10.1093/Nar/Gky1173  0.348
2018 Rossi J, Paczkowski P, Shen YW, Morse K, Flynn B, Kaiser A, Ng C, Gallatin K, Cain T, Fan R, Mackay S, Heath JR, Rosenberg SA, Kochenderfer JN, Zhou J, et al. Preinfusion polyfunctional anti-CD19 chimeric antigen receptor T cells associate with clinical outcomes in NHL. Blood. PMID 29895668 DOI: 10.1182/Blood-2018-01-828343  0.497
2018 Alcazar CRGd, Huh S, Ekram MB, Trinh A, Liu LL, Beca F, Xiaoyuan Z, Kwak M, Bergholtz H, Su Y, Ding L, Russnes HG, Richardson AL, Babski K, Kim EMH, ... ... Fan R, et al. Abstract A15: Immune-related changes in breast cancer tumor evolution Cancer Immunology Research. 6. DOI: 10.1158/2326-6074.Tumimm17-A15  0.322
2018 Alcazar CRGd, Huh S, Ekram MB, Trinh A, Liu LL, Beca F, Xiaoyuan Z, Kwak M, Bergholtz H, Su Y, Ding L, Russnes HG, Richardson AL, Babski K, Kim EMH, ... ... Fan R, et al. Abstract A21: Characterization of the immune environment in the in situ to invasive breast carcinoma transition Molecular Cancer Research. 16. DOI: 10.1158/1557-3125.Advbc17-A21  0.317
2017 Xue Q, Bettini E, Paczkowski P, Ng C, Kaiser A, McConnell T, Kodrasi O, Quigley MF, Heath J, Fan R, Mackay S, Dudley ME, Kassim SH, Zhou J. Single-cell multiplexed cytokine profiling of CD19 CAR-T cells reveals a diverse landscape of polyfunctional antigen-specific response. Journal For Immunotherapy of Cancer. 5: 85. PMID 29157295 DOI: 10.1186/S40425-017-0293-7  0.505
2017 Jayatilaka H, Tyle P, Chen JJ, Kwak M, Ju J, Kim HJ, Lee JSH, Wu PH, Gilkes DM, Fan R, Wirtz D. Synergistic IL-6 and IL-8 paracrine signalling pathway infers a strategy to inhibit tumour cell migration. Nature Communications. 8: 15584. PMID 28548090 DOI: 10.1038/Ncomms15584  0.306
2017 Han L, Wu HJ, Zhu H, Kim KY, Marjani SL, Riester M, Euskirchen G, Zi X, Yang J, Han J, Snyder M, Park IH, Irizarry R, Weissman SM, Michor F, ... Fan R, et al. Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells. Nucleic Acids Research. PMID 28126923 DOI: 10.1093/Nar/Gkx026  0.477
2017 Mackay S, Flynn B, Morse K, Paczkowski P, Bacchiocchi A, Fan R, Halaban R, Zhou J. Single-cell cytokine profiling of tumor-infiltrating T cells to measure patient responses to anti-PD-1 therapy. Journal of Clinical Oncology. 35: 49-49. DOI: 10.1200/Jco.2017.35.7_Suppl.49  0.357
2017 Rossi J, Paczkowski P, Shen Y, Morse K, Flynn B, Kaiser A, Ng C, Gallatin K, Cain T, Fan R, Mackay S, Heath J, Rosenberg SA, Kochenderfer JN, Zhou J, et al. Abstract 2990: Polyfunctional anti-CD19 CAR T cells determined by single-cell multiplex proteomics associated with clinical activity in patients with advanced non-Hodgkin’s lymphoma Cancer Research. 77: 2990-2990. DOI: 10.1158/1538-7445.Am2017-2990  0.509
2016 Chen JJ, Kwak M, Fan R. Single-Cell Cytokine Profiling to Investigate Cellular Functional Diversity in Hematopoietic Malignancies. Methods in Molecular Biology (Clifton, N.J.). 1465: 243-54. PMID 27581152 DOI: 10.1007/978-1-4939-4011-0_19  0.354
2016 Kwak M, Choi J, Kim S, Chen Z, Lee G, Craft J, Fan R. AI-22 Single cell protein and transcriptional profiling of CD4+ follicular B helper T (TFH) and central memory (TCM) cells in SLE: physiological and pathological phenotypes Lupus Science & Medicine. 3. DOI: 10.1136/Lupus-2016-000179.22  0.352
2015 Kwak M, Han L, Chen JJ, Fan R. Interfacing Inorganic Nanowire Arrays and Living Cells for Cellular Function Analysis. Small (Weinheim An Der Bergstrasse, Germany). PMID 26349637 DOI: 10.1002/Smll.201501236  0.529
2015 Xue Q, Lu Y, Eisele MR, Sulistijo ES, Khan N, Fan R, Miller-Jensen K. Analysis of single-cell cytokine secretion reveals a role for paracrine signaling in coordinating macrophage responses to TLR4 stimulation. Science Signaling. 8: ra59. PMID 26082435 DOI: 10.1126/Scisignal.Aaa2155  0.425
2015 Gagliani N, Vesely MC, Iseppon A, Brockmann L, Xu H, Palm NW, de Zoete MR, Licona-Limón P, Paiva RS, Ching T, Weaver C, Zi X, Pan X, Fan R, Garmire LX, et al. Th17 cells transdifferentiate into regulatory T cells during resolution of inflammation. Nature. 523: 221-5. PMID 25924064 DOI: 10.1038/Nature14452  0.312
2015 Mao L, Shen L, Chen J, Wu Y, Kwak M, Lu Y, Xue Q, Pei J, Zhang L, Yuan G, Fan R, Ge J, Ding W. Enhanced bioactivity of Mg-Nd-Zn-Zr alloy achieved with nanoscale MgF2 surface for vascular stent application. Acs Applied Materials & Interfaces. 7: 5320-30. PMID 25705919 DOI: 10.1021/Am5086885  0.372
2015 Lu Y, Xue Q, Eisele MR, Sulistijo ES, Brower K, Han L, Amir el-AD, Pe'er D, Miller-Jensen K, Fan R. Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands. Proceedings of the National Academy of Sciences of the United States of America. 112: E607-15. PMID 25646488 DOI: 10.1073/Pnas.1416756112  0.566
2015 Han L, Zhou J, Sun Y, Zhang Y, Han J, Fu J, Fan R. Erratum: “Erratum: ‘Single-Crystalline, Nanoporous Gallium Nitride Films With Fine Tuning of Pore Size for Stem Cell Engineering’ [ASME J. Nanotechnol. Eng. Med., 2014, 5(4), p. 040903; DOI: 10.1115/1.4030615]” [ASME. J. Nanotechnol. Eng. Med.,] Journal of Nanotechnology in Engineering and Medicine. 6. DOI: 10.1115/1.4029153  0.423
2014 Han L, Zhou J, Sun Y, Zhang Y, Han J, Fu J, Fan R. Single-Crystalline, Nanoporous Gallium Nitride Films With Fine Tuning of Pore Size for Stem Cell Engineering. Journal of Nanotechnology in Engineering and Medicine. 5: 0410041-410049. PMID 26199680 DOI: 10.1115/1.4030615  0.455
2014 Ma C, Fan R. Cancer immunotherapy and next-generation clinical immune assessment. Frontiers in Oncology. 4: 265. PMID 25309877 DOI: 10.3389/Fonc.2014.00265  0.324
2014 Han L, Zi X, Garmire LX, Wu Y, Weissman SM, Pan X, Fan R. Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform. Scientific Reports. 4: 6485. PMID 25255798 DOI: 10.1038/Srep06485  0.495
2014 Elitas M, Brower K, Lu Y, Chen JJ, Fan R. A microchip platform for interrogating tumor-macrophage paracrine signaling at the single-cell level. Lab On a Chip. 14: 3582-8. PMID 25057779 DOI: 10.1039/C4Lc00676C  0.746
2014 Kim DJ, Kim GS, Seol JK, Hyung JH, Park NW, Lee MR, Lee MK, Fan R, Lee SK. Filopodial morphology correlates to the capture efficiency of primary T-cells on nanohole arrays. Journal of Biomedical Nanotechnology. 10: 1030-40. PMID 24749397 DOI: 10.1166/Jbn.2014.1814  0.367
2014 Kwak M, Kim DJ, Lee MR, Wu Y, Han L, Lee SK, Fan R. Nanowire array chips for molecular typing of rare trafficking leukocytes with application to neurodegenerative pathology. Nanoscale. 6: 6537-50. PMID 24705924 DOI: 10.1039/C3Nr06465D  0.503
2014 Guo S, Zi X, Schulz VP, Cheng J, Zhong M, Koochaki SH, Megyola CM, Pan X, Heydari K, Weissman SM, Gallagher PG, Krause DS, Fan R, Lu J. Nonstochastic reprogramming from a privileged somatic cell state. Cell. 156: 649-62. PMID 24486105 DOI: 10.1016/J.Cell.2014.01.020  0.316
2014 Lee SK, Kim DJ, Lee G, Kim GS, Kwak M, Fan R. Specific rare cell capture using micro-patterned silicon nanowire platform. Biosensors & Bioelectronics. 54: 181-8. PMID 24274988 DOI: 10.1016/J.Bios.2013.10.048  0.377
2013 Wei W, Shin YS, Ma C, Wang J, Elitas M, Fan R, Heath JR. Microchip platforms for multiplex single-cell functional proteomics with applications to immunology and cancer research. Genome Medicine. 5: 75. PMID 23998271 DOI: 10.1186/Gm479  0.773
2013 Ma C, Fan R, Elitas M. Single cell functional proteomics for assessing immune response in cancer therapy: technology, methods, and applications. Frontiers in Oncology. 3: 133. PMID 23755371 DOI: 10.3389/Fonc.2013.00133  0.71
2013 Kwak M, Mu L, Lu Y, Chen JJ, Wu Y, Brower K, Fan R. Erratum: single-cell protein secretomic signatures as potential correlates to tumor cell lineage evolution and cell-cell interaction. Frontiers in Oncology. 3: 78. PMID 23579430 DOI: 10.3389/Fonc.2013.00078  0.402
2013 Kwak M, Mu L, Lu Y, Chen JJ, Brower K, Fan R. Single-cell protein secretomic signatures as potential correlates to tumor cell lineage evolution and cell-cell interaction. Frontiers in Oncology. 3: 10. PMID 23390614 DOI: 10.3389/Fonc.2013.00010  0.501
2013 Lu Y, Chen JJ, Mu L, Xue Q, Wu Y, Wu PH, Li J, Vortmeyer AO, Miller-Jensen K, Wirtz D, Fan R. High-throughput secretomic analysis of single cells to assess functional cellular heterogeneity. Analytical Chemistry. 85: 2548-56. PMID 23339603 DOI: 10.1021/Ac400082E  0.508
2013 Chen W, Huang NT, Oh B, Lam RH, Fan R, Cornell TT, Shanley TP, Kurabayashi K, Fu J. Surface-micromachined microfiltration membranes for efficient isolation and functional immunophenotyping of subpopulations of immune cells. Advanced Healthcare Materials. 2: 965-75. PMID 23335389 DOI: 10.1002/Adhm.201200378  0.345
2013 Chen W, Huang N, Oh B, Lam RHW, Fan R, Cornell TT, Shanley TP, Kurabayashi K, Fu J. Cell Assays: Surface-Micromachined Microfiltration Membranes for Efficient Isolation and Functional Immunophenotyping of Subpopulations of Immune Cells (Adv. Healthcare Mater. 7/2013) Advanced Healthcare Materials. 2: 921-921. DOI: 10.1002/Adhm.201370035  0.318
2012 Wu Y, Garmire LX, Fan R. Inter-cellular signaling network reveals a mechanistic transition in tumor microenvironment. Integrative Biology : Quantitative Biosciences From Nano to Macro. 4: 1478-86. PMID 23080410 DOI: 10.1039/C2Ib20044A  0.316
2012 Zhou J, Wu Y, Lee SK, Fan R. High-content single-cell analysis on-chip using a laser microarray scanner. Lab On a Chip. 12: 5025-33. PMID 22991099 DOI: 10.1039/C2Lc40309A  0.354
2012 Lee SK, Kim GS, Wu Y, Kim DJ, Lu Y, Kwak M, Han L, Hyung JH, Seol JK, Sander C, Gonzalez A, Li J, Fan R. Nanowire substrate-based laser scanning cytometry for quantitation of circulating tumor cells. Nano Letters. 12: 2697-704. PMID 22646476 DOI: 10.1021/Nl2041707  0.583
2012 Chen W, Villa-Diaz LG, Sun Y, Weng S, Kim JK, Lam RH, Han L, Fan R, Krebsbach PH, Fu J. Nanotopography influences adhesion, spreading, and self-renewal of human embryonic stem cells. Acs Nano. 6: 4094-103. PMID 22486594 DOI: 10.1021/Nn3004923  0.475
2012 Wu Y, Lu Y, Chen W, Fu J, Fan R. In silico experimentation of glioma microenvironment development and anti-tumor therapy. Plos Computational Biology. 8: e1002355. PMID 22319429 DOI: 10.1371/Journal.Pcbi.1002355  0.427
2012 Kim DJ, Seol JK, Wu Y, Ji S, Kim GS, Hyung JH, Lee SY, Lim H, Fan R, Lee SK. A quartz nanopillar hemocytometer for high-yield separation and counting of CD4(+) T lymphocytes. Nanoscale. 4: 2500-7. PMID 22218701 DOI: 10.1039/C2Nr11338D  0.318
2012 Shi Q, Qin L, Wei W, Geng F, Fan R, Shin YS, Guo D, Hood L, Mischel PS, Heath JR. Single-cell proteomic chip for profiling intracellular signaling pathways in single tumor cells. Proceedings of the National Academy of Sciences of the United States of America. 109: 419-24. PMID 22203961 DOI: 10.1073/Pnas.1110865109  0.783
2011 Guan W, Fan R, Reed MA. Field-effect reconfigurable nanofluidic ionic diodes. Nature Communications. 2: 506. PMID 22009038 DOI: 10.1038/Ncomms1514  0.331
2011 Ma C, Fan R, Ahmad H, Shi Q, Comin-Anduix B, Chodon T, Koya RC, Liu CC, Kwong GA, Radu CG, Ribas A, Heath JR. A clinical microchip for evaluation of single immune cells reveals high functional heterogeneity in phenotypically similar T cells. Nature Medicine. 17: 738-43. PMID 21602800 DOI: 10.1038/Nm.2375  0.781
2011 Shin YS, Remacle F, Fan R, Hwang K, Wei W, Ahmad H, Levine RD, Heath JR. Protein signaling networks from single cell fluctuations and information theory profiling. Biophysical Journal. 100: 2378-86. PMID 21575571 DOI: 10.1016/J.Bpj.2011.04.025  0.771
2010 Shin YS, Ahmad H, Shi Q, Kim H, Pascal TA, Fan R, Goddard WA, Heath JR. Chemistries for patterning robust DNA microbarcodes enable multiplex assays of cytoplasm proteins from single cancer cells. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 11: 3063-9. PMID 20715281 DOI: 10.1002/Cphc.201000528  0.754
2010 Shin YS, Hwang K, Fan R, Heath JR. Abstract LB-141: Multiple protein secretion profiling analysis of cancer cells at single cell and small cell colony level with integrated barcode chip Cancer Research. 70. DOI: 10.1158/1538-7445.Am10-Lb-141  0.675
2009 Yan R, Liang W, Fan R, Yang P. Nanofluidic diodes based on nanotube heterojunctions. Nano Letters. 9: 3820-5. PMID 19603791 DOI: 10.1021/Nl9020123  0.62
2009 Vermesh U, Choi JW, Vermesh O, Fan R, Nagarah J, Heath JR. Fast nonlinear ion transport via field-induced hydrodynamic slip in sub-20-nm hydrophilic nanofluidic transistors. Nano Letters. 9: 1315-9. PMID 19265427 DOI: 10.1021/Nl802931R  0.709
2008 Fan R, Vermesh O, Srivastava A, Yen BK, Qin L, Ahmad H, Kwong GA, Liu CC, Gould J, Hood L, Heath JR. Integrated barcode chips for rapid, multiplexed analysis of proteins in microliter quantities of blood. Nature Biotechnology. 26: 1373-8. PMID 19029914 DOI: 10.1038/Nbt.1507  0.747
2008 Fan R, Huh S, Yan R, Arnold J, Yang P. Gated proton transport in aligned mesoporous silica films. Nature Materials. 7: 303-7. PMID 18297076 DOI: 10.1038/Nmat2127  0.612
2007 Huang J, Fan R, Connor S, Yang P. One-step patterning of aligned nanowire arrays by programmed dip coating. Angewandte Chemie (International Ed. in English). 46: 2414-7. PMID 17328024 DOI: 10.1002/Anie.200604789  0.448
2007 Sirbuly DJ, Too A, Law M, Fan R, Yang P. Multifunctional nanowire evanescent wave optical sensors Advanced Materials. 19: 61-66. DOI: 10.1002/Adma.200601995  0.581
2006 Goldberger J, Fan R, Yang P. Inorganic nanotubes: a novel platform for nanofluidics. Accounts of Chemical Research. 39: 239-48. PMID 16618091 DOI: 10.1021/Ar040274H  0.691
2006 Zhang Y, Christofferson J, Shakouri A, Li D, Majumdar A, Wu Y, Fan R, Yang P. Characterization of heat transfer along a silicon nanowire using thermoreflectance technique Ieee Transactions On Nanotechnology. 5: 67-73. DOI: 10.1109/Tnano.2005.861769  0.598
2006 Goldberger J, Hochbaum AI, Fan R, Yang P. Silicon vertically integrated nanowire field effect transistors Nano Letters. 6: 973-977. DOI: 10.1021/Nl060166J  0.772
2005 Fan R, Yue M, Karnik R, Majumdar A, Yang P. Polarity switching and transient responses in single nanotube nanofluidic transistors. Physical Review Letters. 95: 086607. PMID 16196887 DOI: 10.1103/Physrevlett.95.086607  0.497
2005 Karnik R, Castelino K, Fan R, Yang P, Majumdar A. Effects of biological reactions and modifications on conductance of nanofluidic channels. Nano Letters. 5: 1638-42. PMID 16159198 DOI: 10.1021/Nl050966E  0.465
2005 Fan R, Karnik R, Yue M, Li D, Majumdar A, Yang P. DNA translocation in inorganic nanotubes. Nano Letters. 5: 1633-7. PMID 16159197 DOI: 10.1021/Nl0509677  0.491
2005 Karnik R, Fan R, Yue M, Li D, Yang P, Majumdar A. Electrostatic control of ions and molecules in nanofluidic transistors. Nano Letters. 5: 943-8. PMID 15884899 DOI: 10.1021/Nl050493B  0.485
2005 Hochbaum AI, Fan R, He R, Yang P. Controlled growth of Si nanowire arrays for device integration. Nano Letters. 5: 457-60. PMID 15755094 DOI: 10.1021/Nl047990X  0.758
2005 He R, Gao D, Fan R, Hochbaum AI, Carraro C, Maboudian R, Yang P. Si nanowire bridges in microtrenches: Integration of growth into device fabrication Advanced Materials. 17: 2098-2102. DOI: 10.1002/Adma.200401959  0.753
2004 Li D, Yue M, Karnik R, Majumdar A, Fan R, Yang P. Ion Transport in Nanochannels Volume!. 613-616. DOI: 10.1115/Ht-Fed2004-56717  0.511
2003 Fan R, Wu Y, Li D, Yue M, Majumdar A, Yang P. Fabrication of silica nanotube arrays from vertical silicon nanowire templates. Journal of the American Chemical Society. 125: 5254-5. PMID 12720419 DOI: 10.1021/Ja034163+  0.617
2003 Li D, Wu Y, Fan R, Yang P, Majumdar A. Thermal conductivity of Si/SiGe superlattice nanowires Applied Physics Letters. 83: 3186-3188. DOI: 10.1063/1.1619221  0.598
2002 Yang P, Wu Y, Fan R. Inorganic Semiconductor Nanowires International Journal of Nanoscience. 1: 1-39. DOI: 10.1142/S0219581X02000061  0.616
2002 He R, Law M, Fan R, Kim F, Yang P. Functional Bimorph Composite Nanotapes Nano Letters. 2: 1109-1112. DOI: 10.1021/Nl0257216  0.678
2002 Wu Y, Fan R, Yang P. Block-by-Block Growth of Single-Crystalline Si/SiGe Superlattice Nanowires Nano Letters. 2: 83-86. DOI: 10.1021/Nl0156888  0.616
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