| Year |
Citation |
Score |
| 2024 |
Hackley RK, Hwang S, Herb JT, Bhanap P, Lam K, Vreugdenhil A, Darnell CL, Pastor MM, Martin JH, Maupin-Furlow JA, Schmid AK. TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii. Molecular Microbiology. PMID 38204420 DOI: 10.1111/mmi.15225 |
0.307 |
|
| 2021 |
Sakrikar S, Schmid AK. An archaeal histone-like protein regulates gene expression in response to salt stress. Nucleic Acids Research. 49: 12732-12743. PMID 34883507 DOI: 10.1093/nar/gkab1175 |
0.307 |
|
| 2020 |
Darnell CL, Zheng J, Wilson S, Bertoli RM, Bisson-Filho AW, Garner EC, Schmid AK. The Ribbon-Helix-Helix Domain Protein CdrS Regulates the Tubulin Homolog To Control Cell Division in Archaea. Mbio. 11. PMID 32788376 DOI: 10.1128/Mbio.01007-20 |
0.381 |
|
| 2019 |
Hwang S, Chavarria NE, Hackley RK, Schmid AK, Maupin-Furlow JA. Gene Expression of on Intermediate and Abundant Sources of Fixed Nitrogen. International Journal of Molecular Sciences. 20. PMID 31561502 DOI: 10.3390/Ijms20194784 |
0.39 |
|
| 2019 |
Hackley RK, Schmid AK. Global transcriptional programs in archaea share features with the eukaryotic environmental stress response. Journal of Molecular Biology. PMID 31437442 DOI: 10.1016/J.Jmb.2019.07.029 |
0.411 |
|
| 2019 |
Zaretsky M, Darnell CL, Schmid AK, Eichler J. -Glycosylation Is Important for Archaellin Expression, Archaellum Assembly and Cell Motility. Frontiers in Microbiology. 10: 1367. PMID 31275283 DOI: 10.3389/Fmicb.2019.01367 |
0.352 |
|
| 2018 |
Martin JH, Rawls KS, Chan JC, Hwang S, Martinez-Pastor M, McMillan LJ, Prunetti L, Schmid AK, Maupin-Furlow JA. GlpR is a direct transcriptional repressor of fructose metabolic genes in . Journal of Bacteriology. PMID 29914986 DOI: 10.1128/Jb.00244-18 |
0.415 |
|
| 2018 |
McDowell IC, Manandhar D, Vockley CM, Schmid AK, Reddy TE, Engelhardt BE. Clustering gene expression time series data using an infinite Gaussian process mixture model. Plos Computational Biology. 14: e1005896. PMID 29337990 DOI: 10.1371/Journal.Pcbi.1005896 |
0.308 |
|
| 2017 |
Eun YJ, Ho PY, Kim M, LaRussa S, Robert L, Renner LD, Schmid A, Garner E, Amir A. Archaeal cells share common size control with bacteria despite noisier growth and division. Nature Microbiology. PMID 29255255 DOI: 10.1038/S41564-017-0082-6 |
0.302 |
|
| 2017 |
Martinez-Pastor M, Tonner PD, Darnell CL, Schmid AK. Transcriptional Regulation in Archaea: From Individual Genes to Global Regulatory Networks. Annual Review of Genetics. 51: 143-170. PMID 29178818 DOI: 10.1146/Annurev-Genet-120116-023413 |
0.443 |
|
| 2017 |
Darnell CL, Tonner PD, Gulli JG, Schmidler SC, Schmid AK. Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis. Msystems. 2. PMID 28951888 DOI: 10.1128/mSystems.00032-17 |
0.336 |
|
| 2015 |
Kulp AJ, Sun B, Ai T, Manning AJ, Orench-Rivera N, Schmid AK, Kuehn MJ. Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli. Plos One. 10: e0139200. PMID 26406465 DOI: 10.1371/Journal.Pone.0139200 |
0.339 |
|
| 2015 |
Dulmage KA, Todor H, Schmid AK. Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein. Mbio. 6: e00649-15. PMID 26350964 DOI: 10.1128/Mbio.00649-15 |
0.387 |
|
| 2015 |
Todor H, Gooding J, Ilkayeva OR, Schmid AK. Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences. Plos One. 10: e0135693. PMID 26284786 DOI: 10.1371/Journal.Pone.0135693 |
0.353 |
|
| 2015 |
Darnell CL, Schmid AK. Systems biology approaches to defining transcription regulatory networks in halophilic archaea. Methods (San Diego, Calif.). PMID 25976837 DOI: 10.1016/J.Ymeth.2015.04.034 |
0.407 |
|
| 2015 |
Tonner PD, Pittman AM, Gulli JG, Sharma K, Schmid AK. A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea. Plos Genetics. 11: e1004912. PMID 25569531 DOI: 10.1371/Journal.Pgen.1004912 |
0.439 |
|
| 2015 |
Tonner PD, Pittman AMC, Gulli JG, Sharma K, Schmid AK. RosR is a bifunctional regulator and a large fraction of hits result in functional effects on gene expression. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004912.G003 |
0.365 |
|
| 2014 |
Todor H, Dulmage K, Gillum N, Bain JR, Muehlbauer MJ, Schmid AK. A transcription factor links growth rate and metabolism in the hypersaline adapted archaeon Halobacterium salinarum. Molecular Microbiology. 93: 1172-82. PMID 25060603 DOI: 10.1111/Mmi.12726 |
0.376 |
|
| 2013 |
Todor H, Sharma K, Pittman AM, Schmid AK. Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea. Nucleic Acids Research. 41: 8546-58. PMID 23892291 DOI: 10.1093/Nar/Gkt659 |
0.406 |
|
| 2012 |
Sharma K, Gillum N, Boyd JL, Schmid A. The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon. Bmc Genomics. 13: 351. PMID 22846541 DOI: 10.1186/1471-2164-13-351 |
0.394 |
|
| 2011 |
Schmid AK, Pan M, Sharma K, Baliga NS. Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon. Nucleic Acids Research. 39: 2519-33. PMID 21109526 DOI: 10.1093/Nar/Gkq1211 |
0.321 |
|
| 2009 |
Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, Baliga NS. Prevalence of transcription promoters within archaeal operons and coding sequences. Molecular Systems Biology. 5: 285. PMID 19536208 DOI: 10.1038/Msb.2009.42 |
0.385 |
|
| 2009 |
Schmid AK, Reiss DJ, Pan M, Koide T, Baliga NS. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Molecular Systems Biology. 5: 282. PMID 19536205 DOI: 10.1038/Msb.2009.40 |
0.369 |
|
| 2007 |
Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, et al. A predictive model for transcriptional control of physiology in a free living cell. Cell. 131: 1354-65. PMID 18160043 DOI: 10.1016/J.Cell.2007.10.053 |
0.375 |
|
| 2007 |
Schmid AK, Reiss DJ, Kaur A, Pan M, King N, Van PT, Hohmann L, Martin DB, Baliga NS. The anatomy of microbial cell state transitions in response to oxygen. Genome Research. 17: 1399-413. PMID 17785531 DOI: 10.1101/Gr.6728007 |
0.376 |
|
| 2006 |
Rothfuss H, Lara JC, Schmid AK, Lidstrom ME. Involvement of the S-layer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1. Microbiology (Reading, England). 152: 2779-87. PMID 16946272 DOI: 10.1099/Mic.0.28971-0 |
0.593 |
|
| 2005 |
Schmid AK, Lipton MS, Mottaz H, Monroe ME, Smith RD, Lidstrom ME. Global whole-cell FTICR mass spectrometric proteomics analysis of the heat shock response in the radioresistant bacterium Deinococcus radiodurans. Journal of Proteome Research. 4: 709-18. PMID 15952717 DOI: 10.1021/Pr049815N |
0.562 |
|
| 2005 |
Schmid AK, Howell HA, Battista JR, Peterson SN, Lidstrom ME. Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans. Journal of Bacteriology. 187: 3339-51. PMID 15866918 DOI: 10.1128/Jb.187.10.3339-3351.2005 |
0.585 |
|
| 2005 |
Schmid AK, Howell HA, Battista JR, Peterson SN, Lidstrom ME. HspR is a global negative regulator of heat shock gene expression in Deinococcus radiodurans. Molecular Microbiology. 55: 1579-90. PMID 15720562 DOI: 10.1111/J.1365-2958.2005.04494.X |
0.591 |
|
| 2002 |
Schmid AK, Lidstrom ME. Involvement of two putative alternative sigma factors in stress response of the radioresistant bacterium Deinococcus radiodurans. Journal of Bacteriology. 184: 6182-9. PMID 12399488 DOI: 10.1128/Jb.184.22.6182-6189.2002 |
0.583 |
|
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