| Year |
Citation |
Score |
| 2023 |
Fecho K, Bizon C, Issabekova T, Moxon S, Thessen AE, Abdollahi S, Baranzini SE, Belhu B, Byrd WE, Chung L, Crouse A, Duby MP, Ferguson S, Foksinska A, Forero L, ... ... Wu C, et al. An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges. Journal of Clinical and Translational Science. 7: e214. PMID 37900350 DOI: 10.1017/cts.2023.619 |
0.582 |
|
| 2023 |
Callaghan J, Xu CH, Xin J, Cano MA, Riutta A, Zhou E, Juneja R, Yao Y, Narayan M, Hanspers K, Agrawal A, Pico AR, Wu C, Su AI. BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. Bioinformatics (Oxford, England). PMID 37707514 DOI: 10.1093/bioinformatics/btad570 |
0.701 |
|
| 2023 |
Callaghan J, Xu CH, Xin J, Cano MA, Riutta A, Zhou E, Juneja R, Yao Y, Narayan M, Hanspers K, Agrawal A, Pico AR, Wu C, Su AI. BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. Arxiv. PMID 37131885 |
0.703 |
|
| 2023 |
Cano MA, Tsueng G, Zhou X, Xin J, Hughes LD, Mullen JL, Su AI, Wu C. Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data. Bmc Bioinformatics. 24: 159. PMID 37081398 DOI: 10.1186/s12859-023-05258-4 |
0.672 |
|
| 2023 |
Gangavarapu K, Latif AA, Mullen JL, Alkuzweny M, Hufbauer E, Tsueng G, Haag E, Zeller M, Aceves CM, Zaiets K, Cano M, Zhou X, Qian Z, Sattler R, Matteson NL, ... ... Wu C, et al. Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations. Nature Methods. PMID 36823332 DOI: 10.1038/s41592-023-01769-3 |
0.568 |
|
| 2023 |
Tsueng G, Mullen JL, Alkuzweny M, Cano M, Rush B, Haag E, Lin J, Welzel DJ, Zhou X, Qian Z, Latif AA, Hufbauer E, Zeller M, Andersen KG, Wu C, et al. Outbreak.info Research Library: a standardized, searchable platform to discover and explore COVID-19 resources. Nature Methods. PMID 36823331 DOI: 10.1038/s41592-023-01770-w |
0.521 |
|
| 2023 |
Hughes LD, Tsueng G, DiGiovanna J, Horvath TD, Rasmussen LV, Savidge TC, Stoeger T, Turkarslan S, Wu Q, Wu C, Su AI, Pache L. Addressing barriers in FAIR data practices for biomedical data. Scientific Data. 10: 98. PMID 36823198 DOI: 10.1038/s41597-023-01969-8 |
0.499 |
|
| 2023 |
Tsueng G, Cano MAA, Bento J, Czech C, Kang M, Pache L, Rasmussen LV, Savidge TC, Starren J, Wu Q, Xin J, Yeaman MR, Zhou X, Su AI, Wu C, et al. Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific Data. 10: 99. PMID 36823157 DOI: 10.1038/s41597-023-01968-9 |
0.696 |
|
| 2022 |
Hughes L, Gangavarapu K, Latif AA, Mullen J, Alkuzweny M, Hufbauer E, Tsueng G, Haag E, Zeller M, Aceves C, Zaiets K, Cano M, Zhou J, Qian Z, Sattler R, ... ... Wu C, et al. Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations. Research Square. PMID 35794893 DOI: 10.21203/rs.3.rs-1723829/v1 |
0.567 |
|
| 2022 |
Cano M, Tsueng G, Zhou X, Hughes LD, Mullen JL, Xin J, Su AI, Wu C. Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data. Biorxiv : the Preprint Server For Biology. PMID 35677074 DOI: 10.1101/2021.09.02.458726 |
0.672 |
|
| 2022 |
Tsueng G, Mullen J, Alkuzweny M, Cano M, Rush B, Haag E, Curators O, Alaa Abdel L, Zhou X, Qian Z, Andersen KG, Wu C, Su AI, Gangavarapu K, Hughes LD. Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources and data. Biorxiv : the Preprint Server For Biology. PMID 35132411 DOI: 10.1101/2022.01.20.477133 |
0.567 |
|
| 2022 |
Lelong S, Zhou X, Afrasiabi C, Qian Z, Cano MA, Tsueng G, Xin J, Mullen J, Yao Y, Avila R, Taylor G, Su AI, Wu C. BioThings SDK: a toolkit for building high-performance data APIs in biomedical research. Bioinformatics (Oxford, England). PMID 35020801 DOI: 10.1093/bioinformatics/btac017 |
0.702 |
|
| 2020 |
Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, ... ... Wu C, et al. Wikidata as a knowledge graph for the life sciences. Elife. 9. PMID 32180547 DOI: 10.7554/Elife.52614 |
0.729 |
|
| 2020 |
Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, ... ... Wu C, et al. Author response: Wikidata as a knowledge graph for the life sciences Elife. DOI: 10.7554/Elife.52614.Sa2 |
0.692 |
|
| 2019 |
Summers KM, Bush SJ, Wu C, Su AI, Muriuki C, Clark EL, Finlayson HA, Eory L, Waddell LA, Talbot R, Archibald AL, Hume DA. Functional Annotation of the Transcriptome of the Pig, , Based Upon Network Analysis of an RNAseq Transcriptional Atlas. Frontiers in Genetics. 10: 1355. PMID 32117413 DOI: 10.3389/Fgene.2019.01355 |
0.609 |
|
| 2019 |
Blasco A, Endres MG, Sergeev RA, Jonchhe A, Macaluso NJM, Narayan R, Natoli T, Paik JH, Briney B, Wu C, Su AI, Subramanian A, Lakhani KR. Advancing computational biology and bioinformatics research through open innovation competitions. Plos One. 14: e0222165. PMID 31560691 DOI: 10.1371/Journal.Pone.0222165 |
0.581 |
|
| 2019 |
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI. ChlamBase: a curated model organism database for the Chlamydia research community. Database : the Journal of Biological Databases and Curation. 2019. PMID 31211397 DOI: 10.1093/database/baz091 |
0.758 |
|
| 2019 |
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Wu C, Su AI. ChlamBase: a curated model organism database for the Chlamydia research community. Database : the Journal of Biological Databases and Curation. 2019. PMID 30985891 DOI: 10.1093/Database/Baz041 |
0.791 |
|
| 2019 |
Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, ... ... Wu C, et al. exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids. Cell. 177: 463-477.e15. PMID 30951672 DOI: 10.1016/J.Cell.2019.02.018 |
0.773 |
|
| 2018 |
Tsunemoto R, Lee S, Szűcs A, Chubukov P, Sokolova I, Blanchard JW, Eade KT, Bruggemann J, Wu C, Torkamani A, Sanna PP, Baldwin KK. Diverse reprogramming codes for neuronal identity. Nature. PMID 29743677 DOI: 10.1038/S41586-018-0103-5 |
0.65 |
|
| 2018 |
Xin J, Afrasiabi C, Lelong S, Adesara J, Tsueng G, Su AI, Wu C. Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration. Bmc Bioinformatics. 19: 30. PMID 29390967 DOI: 10.1186/S12859-018-2041-5 |
0.705 |
|
| 2018 |
Lelong S, Afrasiabi C, Xin J, Cano M, Tsueng G, Su AI, Wu C. BioThings Studio: an API gateway for biomedical knowledge F1000research. 7. DOI: 10.7490/F1000Research.1115797.1 |
0.694 |
|
| 2017 |
Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang H, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, et al. A high resolution atlas of gene expression in the domestic sheep (Ovis aries). Plos Genetics. 13: e1006997. PMID 28915238 DOI: 10.1371/Journal.Pgen.1006997 |
0.375 |
|
| 2017 |
Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM. WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database : the Journal of Biological Databases and Curation. 2017. PMID 28365742 DOI: 10.1093/database/bax025 |
0.775 |
|
| 2017 |
Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, ... ... Wu C, et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics. 49: 170-174. PMID 28138153 DOI: 10.1038/Ng.3774 |
0.717 |
|
| 2017 |
Afrasiabi C, Lelong S, Xin J, Tsueng G, Su AI, Wu C. BioThings SDK: a toolkit for building high-performance data APIs in biology F1000research. 6. DOI: 10.7490/F1000Research.1114587.1 |
0.669 |
|
| 2017 |
Xin J, Afrasiabi C, Lelong S, Su AI, Wu C. BioThings Explorer: utilizing JSON-LD for linking biological APIs to facilitate knowledge discovery F1000research. 6. DOI: 10.7490/F1000Research.1114451.1 |
0.713 |
|
| 2016 |
Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, ... Wu C, et al. High-performance web services for querying gene and variant annotation. Genome Biology. 17: 91. PMID 27154141 DOI: 10.1186/S13059-016-0953-9 |
0.778 |
|
| 2016 |
Putman TE, Burgstaller-Muehlbacher S, Waagmeester A, Wu C, Su AI, Good BM. Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database : the Journal of Biological Databases and Curation. 2016. PMID 27022157 DOI: 10.1093/Database/Baw028 |
0.798 |
|
| 2016 |
Wu C, Jin X, Tsueng G, Afrasiabi C, Su AI. BioGPS: building your own mash-up of gene annotations and expression profiles. Nucleic Acids Research. 44: D313-6. PMID 26578587 DOI: 10.1093/Nar/Gkv1104 |
0.59 |
|
| 2016 |
Xin J, Afrasiabi C, Lelong S, Tsueng G, Mayers MD, Mooney SD, Su AI, Wu C. Biothings APIs: linked high-performance APIs for biological entities F1000research. 5. DOI: 10.7490/F1000Research.1113452.1 |
0.652 |
|
| 2016 |
Xin J, Wu C, Afrasiabi C, Lelong S, Tsueng G, Su AI. MyGene.info and MyVariant.info: providing gene and genetic variant annotations as a service F1000research. 5. DOI: 10.7490/F1000Research.1112806.1 |
0.681 |
|
| 2015 |
Liu X, Wu C, Li C, Boerwinkle E. dbNSFP v3.0: A One-Stop Database of Functional Predictions and Annotations for Human Non-synonymous and Splice Site SNVs. Human Mutation. PMID 26555599 DOI: 10.1002/Humu.22932 |
0.31 |
|
| 2015 |
Good BM, Nanis M, Wu C, Su AI. Microtask crowdsourcing for disease mention annotation in PubMed abstracts. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 282-93. PMID 25592589 |
0.718 |
|
| 2014 |
Good BM, Loguercio S, Griffith OL, Nanis M, Wu C, Su AI. The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction. Jmir Serious Games. 2: e7. PMID 25654473 DOI: 10.2196/games.3350 |
0.774 |
|
| 2013 |
Shoulders MD, Ryno LM, Genereux JC, Moresco JJ, Tu PG, Wu C, Yates JR, Su AI, Kelly JW, Wiseman RL. Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments. Cell Reports. 3: 1279-92. PMID 23583182 DOI: 10.1016/J.Celrep.2013.03.024 |
0.51 |
|
| 2013 |
Wu C, Macleod I, Su AI. BioGPS and MyGene.info: organizing online, gene-centric information. Nucleic Acids Research. 41: D561-5. PMID 23175613 DOI: 10.1093/Nar/Gks1114 |
0.622 |
|
| 2012 |
Freeman TC, Ivens A, Baillie JK, Beraldi D, Barnett MW, Dorward D, Downing A, Fairbairn L, Kapetanovic R, Raza S, Tomoiu A, Alberio R, Wu C, Su AI, Summers KM, et al. A gene expression atlas of the domestic pig. Bmc Biology. 10: 90. PMID 23153189 DOI: 10.1186/1741-7007-10-90 |
0.58 |
|
| 2012 |
Miller E, Yang J, DeRan M, Wu C, Su AI, Bonamy GM, Liu J, Peters EC, Wu X. Identification of serum-derived sphingosine-1-phosphate as a small molecule regulator of YAP. Chemistry & Biology. 19: 955-62. PMID 22884261 DOI: 10.1016/J.Chembiol.2012.07.005 |
0.509 |
|
| 2012 |
Ringwald M, Wu C, Su AI. BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 550-8. PMID 22847375 DOI: 10.1007/S00335-012-9408-0 |
0.622 |
|
| 2011 |
Hu Y, Galkin AV, Wu C, Reddy V, Su AI. CAFET algorithm reveals Wnt/PCP signature in lung squamous cell carcinoma. Plos One. 6: e25807. PMID 22016777 DOI: 10.1371/Journal.Pone.0025807 |
0.581 |
|
| 2011 |
Dost B, Wu C, Su A, Bafna V. TCLUST: a fast method for clustering genome-scale expression data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 808-18. PMID 20479508 DOI: 10.1109/Tcbb.2010.34 |
0.567 |
|
| 2010 |
Wurdak H, Zhu S, Min KH, Aimone L, Lairson LL, Watson J, Chopiuk G, Demas J, Charette B, Halder R, Weerapana E, Cravatt BF, Cline HT, Peters EC, Zhang J, ... ... Wu C, et al. A small molecule accelerates neuronal differentiation in the adult rat. Proceedings of the National Academy of Sciences of the United States of America. 107: 16542-7. PMID 20823227 DOI: 10.1073/Pnas.1010300107 |
0.4 |
|
| 2010 |
Gonzalez R, Jennings LL, Knuth M, Orth AP, Klock HE, Ou W, Feuerhelm J, Hull MV, Koesema E, Wang Y, Zhang J, Wu C, Cho CY, Su AI, Batalov S, et al. Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency. Proceedings of the National Academy of Sciences of the United States of America. 107: 3552-7. PMID 20133595 DOI: 10.1073/Pnas.0914019107 |
0.627 |
|
| 2009 |
Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW, Su AI. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biology. 10: R130. PMID 19919682 DOI: 10.1186/Gb-2009-10-11-R130 |
0.618 |
|
| 2009 |
Williams R, Lim JE, Harr B, Wing C, Walters R, Distler MG, Teschke M, Wu C, Wiltshire T, Su AI, Sokoloff G, Tarantino LM, Borevitz JO, Palmer AA. A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior. Plos One. 4: e4649. PMID 19266052 DOI: 10.1371/Journal.Pone.0004649 |
0.54 |
|
| 2008 |
Breitling R, Li Y, Tesson BM, Fu J, Wu C, Wiltshire T, Gerrits A, Bystrykh LV, de Haan G, Su AI, Jansen RC. Genetical genomics: spotlight on QTL hotspots. Plos Genetics. 4: e1000232. PMID 18949031 DOI: 10.1371/Journal.Pgen.1000232 |
0.594 |
|
| 2008 |
Huss JW, Orozco C, Goodale J, Wu C, Batalov S, Vickers TJ, Valafar F, Su AI. A gene wiki for community annotation of gene function. Plos Biology. 6: e175. PMID 18613750 DOI: 10.1371/Journal.Pbio.0060175 |
0.593 |
|
| 2008 |
Wu C, Delano DL, Mitro N, Su SV, Janes J, McClurg P, Batalov S, Welch GL, Zhang J, Orth AP, Walker JR, Glynne RJ, Cooke MP, Takahashi JS, Shimomura K, et al. Gene set enrichment in eQTL data identifies novel annotations and pathway regulators. Plos Genetics. 4: e1000070. PMID 18464898 DOI: 10.1371/Journal.Pgen.1000070 |
0.766 |
|
| 2007 |
Lyssiotis CA, Walker J, Wu C, Kondo T, Schultz PG, Wu X. Inhibition of histone deacetylase activity induces developmental plasticity in oligodendrocyte precursor cells Proceedings of the National Academy of Sciences of the United States of America. 104: 14982-14987. PMID 17855562 DOI: 10.1073/Pnas.0707044104 |
0.435 |
|
| 2007 |
McClurg P, Janes J, Wu C, Delano DL, Walker JR, Batalov S, Takahashi JS, Shimomura K, Kohsaka A, Bass J, Wiltshire T, Su AI. Genomewide association analysis in diverse inbred mice: power and population structure. Genetics. 176: 675-83. PMID 17409088 DOI: 10.1534/Genetics.106.066241 |
0.766 |
|
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