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Bernhard Haubold - Publications

Affiliations: 
Max Planck Institute of Chemical Ecology 
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Pirogov A, Pfaffelhuber P, Börsch-Haubold A, Haubold B. High-complexity regions in mammalian genomes are enriched for developmental genes. Bioinformatics (Oxford, England). PMID 34529758 DOI: 10.1093/bioinformatics/btab639  0.302
2021 Haubold B, Klötzl F. Fast Phylogeny Reconstruction from Genomes of Closely Related Microbes. Methods in Molecular Biology (Clifton, N.J.). 2242: 77-89. PMID 33961219 DOI: 10.1007/978-1-0716-1099-2_6  0.389
2021 Haubold B, Klötzl F, Hellberg L, Thompson D, Cavalar M. Fur: Find Unique Genomic Regions for Diagnostic PCR. Bioinformatics (Oxford, England). PMID 33515232 DOI: 10.1093/bioinformatics/btab059  0.335
2019 Klötzl F, Haubold B. Phylonium: Fast Estimation of Evolutionary Distances from Large Samples of Similar Genomes. Bioinformatics (Oxford, England). PMID 31790149 DOI: 10.1093/Bioinformatics/Btz903  0.53
2019 Lynch M, Haubold B, Pfaffelhuber P, Maruki T. Inference of Historical Population-Size Changes with Allele-Frequency Data. G3 (Bethesda, Md.). PMID 31699776 DOI: 10.1534/G3.119.400854  0.36
2018 Pirogov A, Pfaffelhuber P, Börsch-Haubold A, Haubold B. High-Complexity Regions in Mammalian Genomes are Enriched for Developmental Genes. Bioinformatics (Oxford, England). PMID 30395202 DOI: 10.1093/Bioinformatics/Bty922  0.515
2016 Klötzl F, Haubold B. Support Values for Genome Phylogenies. Life (Basel, Switzerland). 6. PMID 26959064 DOI: 10.3390/Life6010011  0.546
2015 Haubold B, Klötzl F, Pfaffelhuber P. andi: fast and accurate estimation of evolutionary distances between closely related genomes. Bioinformatics (Oxford, England). 31: 1169-75. PMID 25504847 DOI: 10.1093/Bioinformatics/Btu815  0.471
2014 Lynch M, Xu S, Maruki T, Jiang X, Pfaffelhuber P, Haubold B. Genome-wide linkage-disequilibrium profiles from single individuals. Genetics. 198: 269-81. PMID 24948778 DOI: 10.1534/Genetics.114.166843  0.457
2014 Börsch-Haubold AG, Montero I, Konrad K, Haubold B. Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity. Plos One. 9: e97568. PMID 24849289 DOI: 10.1371/Journal.Pone.0097568  0.343
2014 Haubold B. Alignment-free phylogenetics and population genetics. Briefings in Bioinformatics. 15: 407-18. PMID 24291823 DOI: 10.1093/Bib/Bbt083  0.507
2013 Haubold B, Krause L, Horn T, Pfaffelhuber P. An alignment-free test for recombination. Bioinformatics (Oxford, England). 29: 3121-7. PMID 24064419 DOI: 10.1093/Bioinformatics/Btt550  0.436
2013 McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Vanneste J, et al. Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease. Plos Pathogens. 9: e1003503. PMID 23935484 DOI: 10.1371/Journal.Ppat.1003503  0.461
2012 Haubold B, Pfaffelhuber P. Alignment-free population genomics: an efficient estimator of sequence diversity. G3 (Bethesda, Md.). 2: 883-9. PMID 22908037 DOI: 10.1534/G3.112.002527  0.548
2011 Domazet-Lošo M, Haubold B. Alignment-free detection of horizontal gene transfer between closely related bacterial genomes. Mobile Genetic Elements. 1: 230-235. PMID 22312592 DOI: 10.4161/Mge.1.3.18065  0.426
2011 Tellier A, Pfaffelhuber P, Haubold B, Naduvilezhath L, Rose LE, Städler T, Stephan W, Metzler D. Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. Plos One. 6: e18155. PMID 21637331 DOI: 10.1371/Journal.Pone.0018155  0.383
2011 Domazet-Lošo M, Haubold B. Alignment-free detection of local similarity among viral and bacterial genomes. Bioinformatics (Oxford, England). 27: 1466-72. PMID 21471011 DOI: 10.1093/Bioinformatics/Btr176  0.452
2011 Haubold B, Reed FA, Pfaffelhuber P. Alignment-free estimation of nucleotide diversity. Bioinformatics (Oxford, England). 27: 449-55. PMID 21156730 DOI: 10.1093/Bioinformatics/Btq689  0.733
2010 Haubold B, Pfaffelhuber P, Lynch M. mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. Molecular Ecology. 19: 277-84. PMID 20331786 DOI: 10.1111/J.1365-294X.2009.04482.X  0.449
2010 Wolf JB, Bayer T, Haubold B, Schilhabel M, Rosenstiel P, Tautz D. Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology. 19: 162-75. PMID 20331778 DOI: 10.1111/J.1365-294X.2009.04471.X  0.447
2009 Domazet-Loso M, Haubold B. Efficient estimation of pairwise distances between genomes. Bioinformatics (Oxford, England). 25: 3221-7. PMID 19825795 DOI: 10.1093/Bioinformatics/Btp590  0.504
2009 Haubold B, Pfaffelhuber P, Domazet-Loso M, Wiehe T. Estimating mutation distances from unaligned genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1487-500. PMID 19803738 DOI: 10.1089/Cmb.2009.0106  0.686
2008 Haubold B, Domazet-Lošo M, Wiehe T. An alignment-free distance measure for closely related genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 87-99. DOI: 10.1007/978-3-540-87989-3_7  0.687
2006 Haubold B, Wiehe T. How repetitive are genomes? Bmc Bioinformatics. 7: 541. PMID 17187668 DOI: 10.1186/1471-2105-7-541  0.713
2006 Pfaffelhuber P, Haubold B, Wakolbinger A. Approximate genealogies under genetic hitchhiking Genetics. 174: 1995-2008. PMID 17182733 DOI: 10.1534/Genetics.106.061887  0.32
2006 Haubold B, Wiehe T. Introduction to computational biology: An evolutionary approach Introduction to Computational Biology: An Evolutionary Approach. 1-328. DOI: 10.1007/3-7643-7387-3  0.698
2005 Haubold B, Pierstorff N, Möller F, Wiehe T. Genome comparison without alignment using shortest unique substrings. Bmc Bioinformatics. 6: 123. PMID 15910684 DOI: 10.1186/1471-2105-6-123  0.731
2004 Haubold B, Wiehe T. Comparative genomics: methods and applications. Die Naturwissenschaften. 91: 405-21. PMID 15278216 DOI: 10.1007/S00114-004-0542-8  0.742
2004 Haubold B. Rex A. Dwyer: Genomic Perl: From Bioinformatics Basics to Working Code Naturwissenschaften. 91: 48-49. DOI: 10.1007/S00114-003-0488-2  0.371
2003 Otte K, Kranz H, Kober I, Thompson P, Hoefer M, Haubold B, Remmel B, Voss H, Kaiser C, Albers M, Cheruvallath Z, Jackson D, Casari G, Koegl M, Pääbo S, et al. Identification of farnesoid X receptor beta as a novel mammalian nuclear receptor sensing lanosterol. Molecular and Cellular Biology. 23: 864-72. PMID 12529392 DOI: 10.1128/Mcb.23.3.864-872.2003  0.364
2002 Haubold B, Kroymann J, Ratzka A, Mitchell-Olds T, Wiehe T. Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana. Genetics. 161: 1269-78. PMID 12136029  0.743
2002 Haubold B, Wiehe T. Calculating the SNP-effective sample size from an alignment. Bioinformatics (Oxford, England). 18: 36-8. PMID 11836209 DOI: 10.1093/Bioinformatics/18.1.36  0.68
2001 Koch MA, Weisshaar B, Kroymann J, Haubold B, Mitchell-Olds T. Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters. Molecular Biology and Evolution. 18: 1882-91. PMID 11557794 DOI: 10.1093/Oxfordjournals.Molbev.A003729  0.765
2001 Haubold B, Wiehe T. Statistics of divergence times Molecular Biology and Evolution. 18: 1157-1160. PMID 11420356 DOI: 10.1093/Oxfordjournals.Molbev.A003902  0.638
2001 Koch M, Haubold B, Mitchell-Olds T. Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences. American Journal of Botany. 88: 534-44. PMID 11250830  0.682
2001 Koch M, Haubold B, Mitchell-Olds T. Molecular systematics of the brassicaceae: Evidence from coding plastidic matK and nuclear Chs sequences American Journal of Botany. 88: 534-544. DOI: 10.2307/2657117  0.699
2000 Sharbel TF, Haubold B, Mitchell-Olds T. Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe Molecular Ecology. 9: 2109-2118. PMID 11123622 DOI: 10.1046/J.1365-294X.2000.01122.X  0.714
2000 Koch MA, Haubold B, Mitchell-Olds T. Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae) Molecular Biology and Evolution. 17: 1483-1498. PMID 11018155 DOI: 10.1093/Oxfordjournals.Molbev.A026248  0.67
2000 Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, et al. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Molecular Biology and Evolution. 17: 1467-82. PMID 11018154 DOI: 10.1093/Oxfordjournals.Molbev.A026247  0.324
1998 Preston GM, Haubold B, Rainey PB. Bacterial genomics and adaptation to life on plants: implications for the evolution of pathogenicity and symbiosis. Current Opinion in Microbiology. 1: 589-97. PMID 10066526 DOI: 10.1016/S1369-5274(98)80094-5  0.456
1997 Haubold B, Rainey PB. Towards an Understanding of the Population Genetics of Plant-Colonizing Bacteria Advances in Botanical Research. 24: 335-351. DOI: 10.1016/S0065-2296(08)60078-6  0.347
1996 Haubold B, Rainey PB. Genetic and ecotypic structure of a fluorescent Pseudomonas population Molecular Ecology. 5: 747-761. DOI: 10.1111/J.1365-294X.1996.Tb00371.X  0.33
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