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Richard D. Sheardy - Publications

Affiliations: 
Seton Hall University, South Orange, NJ, United States 
Area:
Biochemistry, General Biophysics
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Sheardy R. Novel NMR Techniques to Study Structural and Dynamical Properties of DNA Quadruplexes. Biophysical Journal. 113: 757-758. PMID 28834710 DOI: 10.1016/J.Bpj.2017.06.060  0.511
2018 Ferreira JM, Sheardy RD. Linking Temperature, Cation Concentration and Water Activity for the B to Z Conformational Transition in DNA. Molecules (Basel, Switzerland). 23. PMID 30037061 DOI: 10.3390/Molecules23071806  0.494
2018 Tucker BA, Hudson JS, Ding L, Lewis E, Sheardy RD, Kharlampieva E, Graves D. Stability of the Na Form of the Human Telomeric G-Quadruplex: Role of Adenines in Stabilizing G-Quadruplex Structure. Acs Omega. 3: 844-855. PMID 30023791 DOI: 10.1021/acsomega.7b01649  0.332
2017 Nguyen T, Fraire C, Sheardy RD. Linking pH, Temperature and K(+) Concentration for DNA i-Motif Formation. The Journal of Physical Chemistry. B. PMID 28737924 DOI: 10.1021/Acs.Jpcb.7B06317  0.39
2016 Boschi E, Davis S, Taylor S, Butterworth A, Chirayath LA, Purohit V, Siegel LK, Buenaventura J, Sheriff AH, Jin R, Sheardy R, Yatsunyk LA, Azam M. Interaction of a Cationic Porphyrin and Its Metal Derivatives with G-Quadruplex DNA. The Journal of Physical Chemistry. B. PMID 27936741 DOI: 10.1021/Acs.Jpcb.6B09827  0.474
2016 McKim M, Buxton A, Johnson CC, Metz A, Sheardy RD. Loop Sequence Context Influences the Formation and Stability of the i-Motif Formed from DNA Oligomers of Sequence (CCCXXX)4. The Journal of Physical Chemistry. B. PMID 27438583 DOI: 10.1021/Acs.Jpcb.6B04561  0.484
2013 Sharma VR, Sheardy RD. The human telomere sequence, (TTAGGG)4, in the absence and presence of cosolutes: a spectroscopic investigation. Molecules (Basel, Switzerland). 19: 595-608. PMID 24399050 DOI: 10.3390/Molecules19010595  0.45
2011 Winkle SA, Duran E, Pulido J, Santil G, Talavera M, Winkle C, Sheardy RD, Ramsauer V. Examining flanking sequence specificity and topological specificity in the binding of various molecular types to DNAs using restriction endonuclease activity assays Acs Symposium Series. 1082: 167-180. DOI: 10.1021/bk-2011-1082.ch010  0.326
2011 Tucker BA, Gabriel S, Sheardy RD. A CD spectroscopic investigation of intermolecular and intramolecular DNA quadruplexes Acs Symposium Series. 1082: 51-67. DOI: 10.1021/bk-2011-1082.ch004  0.401
2009 Spink CH, Ding L, Yang Q, Sheardy RD, Seeman NC. Thermodynamics of forming a parallel DNA crossover. Biophysical Journal. 97: 528-38. PMID 19619467 DOI: 10.1016/J.Bpj.2009.04.054  0.453
2007 Antonacci C, Chaires JB, Sheardy RD. Biophysical characterization of the human telomeric (TTAGGG)4 repeat in a potassium solution Biochemistry. 46: 4654-4660. PMID 17381076 DOI: 10.1021/Bi602511P  0.391
2006 Ferreira JM, Sheardy RD. Enthalpy of the B-to-Z conformational transition of a DNA oligonucleotide determined by isothermal titration calorimetry. Biophysical Journal. 91: 3383-9. PMID 16920828 DOI: 10.1529/Biophysj.106.084145  0.511
2006 Bozza M, Sheardy RD, Dilone E, Scypinski S, Galazka M. Characterization of the secondary structure and stability of an RNA aptamer that binds vascular endothelial growth factor. Biochemistry. 45: 7639-43. PMID 16768459 DOI: 10.1021/Bi0521442  0.541
2005 Paiva AM, Sheardy RD. The influence of sequence context and length on the kinetics of DNA duplex formation from complementary hairpins possessing (CNG) repeats Journal of the American Chemical Society. 127: 5581-5585. PMID 15826196 DOI: 10.1021/Ja043783N  0.471
2004 Paiva AM, Sheardy RD. Influence of sequence context and length on the structure and stability of triplet repeat DNA oligomers Biochemistry. 43: 14218-14227. PMID 15518572 DOI: 10.1021/Bi0494368  0.467
1998 Anantha NV, Azam M, Sheardy RD. Porphyrin binding to quadrupled T4G4. Biochemistry. 37: 2709-14. PMID 9537740 DOI: 10.1021/Bi973009V  0.481
1998 Otokiti EO, Sheardy RD. Sequence effects on the relative thermodynamic stabilities of B-Z junction-forming DNA oligomeric duplexes. Biophysical Journal. 73: 3135-41. PMID 9414225 DOI: 10.1016/S0006-3495(97)78339-5  0.551
1997 Hicks M, Wharton G, Huchital DH, Murphy WR, Sheardy RD. Assessing the sequence specificity in the binding of Co(III) to DNA via a thermodynamic approach. Biopolymers. 42: 549-59. PMID 9322443 DOI: 10.1002/(Sici)1097-0282(19971015)42:5<549::Aid-Bip5>3.0.Co;2-Q  0.505
1997 Otokiti EO, Sheardy RD. Effect of base pair A/C and G/T mismatches on the thermal stabilities of DNA oligomers that form B-Z junctions. Biochemistry. 36: 11419-27. PMID 9298961 DOI: 10.1021/Bi970972S  0.5
1997 Marotta SP, Sheardy RD. Conformational properties of Z-forming DNA oligomers bearing terminal unpaired bases. Biophysical Journal. 71: 3361-9. PMID 8968605 DOI: 10.1016/S0006-3495(96)79529-2  0.466
1996 Marotta SP, Tamburri PA, Sheardy RD. Sequence and environmental effects on the self-assembly of DNA oligomers possessing GxT2Gy segments. Biochemistry. 35: 10484-92. PMID 8756705 DOI: 10.1021/Bi960979U  0.484
1995 Dai TY, Marotta SP, Sheardy RD. Self-assembly of DNA oligomers into high molecular weight species. Biochemistry. 34: 3655-62. PMID 7893661 DOI: 10.1021/Bi00011A021  0.436
1995 Calderone DM, Mantilla EJ, Hicks M, Huchital DH, Murphy WR, Sheardy RD. Binding of Co(III) to a DNA oligomer via reaction of [Co(NH3)5(OH2)]3+ with (5medC-dG)4. Biochemistry. 34: 13841-6. PMID 7577978 DOI: 10.1021/bi00042a016  0.307
1994 Sheardy RD, Levine N, Marotta S, Suh D, Chaires JB. A thermodynamic investigation of the melting of B-Z junction forming DNA oligomers Biochemistry. 33: 1385-1391. PMID 8312256 DOI: 10.1021/Bi00172A014  0.523
1993 Sheardy RD, Suh D, Kurzinsky R, Doktycz MJ, Benight AS, Chaires JB. Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides Journal of Molecular Biology. 231: 475-488. PMID 8510158 DOI: 10.1006/Jmbi.1993.1295  0.462
1993 Winkle SA, Aloyo MC, Lee-Chee T, Morales N, Zambrano TY, Sheardy RD. The interface between an alternating CG motif and a random sequence motif displays altered nuclease activity. Journal of Biomolecular Structure & Dynamics. 10: 389-402. PMID 1466815 DOI: 10.1080/07391102.1992.10508654  0.376
1993 Carlson DL, Huchital DH, Mantilla EJ, Sheardy RD, Murphy WR. A new class of DNA metallobinders showing spectator ligand size selectivity: binding of ligand-bridged bimetallic complexes of ruthenium(II) to calf thymus DNA Journal of the American Chemical Society. 115: 6424-6425. DOI: 10.1021/Ja00067A073  0.369
1992 Lu M, Guo Q, Kallenbach NR, Sheardy RD. Conformational properties of B-Z junctions in DNA. Biochemistry. 31: 4712-9. PMID 1581320 DOI: 10.1021/Bi00134A026  0.503
1991 Winkle SA, Aloyo MC, Morales N, Zambrano TY, Sheardy RD. Enhanced reactivity of a B-Z junction for cleavage by the restriction enzyme MboI. Biochemistry. 30: 10601-6. PMID 1931982 DOI: 10.1021/Bi00108A001  0.476
1991 Suh D, Sheardy RD, Chaires JB. Unusual binding of ethidium to a deoxyoligonucleotide containing a B-Z junction Biochemistry. 30: 8722-8726. PMID 1888733 DOI: 10.1021/Bi00100A002  0.435
1991 Guo Q, Lu M, Shahrestanifar M, Sheardy RD, Kallenbach NR. Drug binding to a DNA BZ molecule: analysis by chemical footprinting. Biochemistry. 30: 11735-41. PMID 1721536 DOI: 10.1021/Bi00115A001  0.441
1990 Doktycz MJ, Benight AS, Sheardy RD. Energetics of B-Z junction formation in a sixteen base-pair duplex DNA. Journal of Molecular Biology. 212: 3-6. PMID 2319599 DOI: 10.1016/0022-2836(90)90297-Y  0.389
1990 Winkle SA, Sheardy RD. Anomalous gel migration of DNA oligomers containing multiple conformational junctions. Biochemistry. 29: 6514-21. PMID 2207093 DOI: 10.1021/Bi00479A025  0.493
1989 Sheardy RD, Winkle SA. Temperature-dependent CD and NMR studies on a synthetic oligonucleotide containing a B-Z junction at high salt. Biochemistry. 28: 720-5. PMID 2713340 DOI: 10.1021/bi00428a046  0.388
1988 Sheardy RD. Preliminary spectroscopic characterization of a synthetic DNA oligomer containing a B-Z junction at high salt. Nucleic Acids Research. 16: 1153-67. PMID 3344203 DOI: 10.1093/nar/16.3.1153  0.411
1986 Ma RI, Kallenbach NR, Sheardy RD, Petrillo ML, Seeman NC. Three-arm nucleic acid junctions are flexible. Nucleic Acids Research. 14: 9745-53. PMID 3808954 DOI: 10.1093/Nar/14.24.9745  0.314
1983 Sheardy RD, Gabbay EJ. Stereospecific binding of diastereomeric peptides to salmon sperm deoxyribonucleic acid. Further evidence for partial intercalation. Biochemistry. 22: 2061-7. PMID 6860650 DOI: 10.1021/Bi00278A005  0.319
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