| Year |
Citation |
Score |
| 2021 |
Shin J, Berezhkovskii AM, Kolomeisky AB. Crowding breaks the forward/backward symmetry of transition times in biased random walks. The Journal of Chemical Physics. 154: 204104. PMID 34241169 DOI: 10.1063/5.0053634 |
0.304 |
|
| 2020 |
Mallory JD, Igoshin OA, Kolomeisky AB. Do We Understand the Mechanisms used by Biological Systems to Correct their Errors? The Journal of Physical Chemistry. B. PMID 32857935 DOI: 10.1021/Acs.Jpcb.0C06180 |
0.304 |
|
| 2020 |
Bel G, Zilman A, Kolomeisky AB. Different time scales in dynamic systems with multiple outcomes. The Journal of Chemical Physics. 153: 054107. PMID 32770919 DOI: 10.1063/5.0018558 |
0.396 |
|
| 2020 |
Thorneywork AL, Gladrow J, Qing Y, Rico-Pasto M, Ritort F, Bayley H, Kolomeisky AB, Keyser UF. Direct detection of molecular intermediates from first-passage times. Science Advances. 6: eaaz4642. PMID 32494675 DOI: 10.1126/Sciadv.Aaz4642 |
0.365 |
|
| 2020 |
Shin J, Berezhkovskii AM, Kolomeisky AB. Biased Random Walk in Crowded Environment: Breaking Uphill/Downhill Symmetry of Transition Times. The Journal of Physical Chemistry Letters. PMID 32433884 DOI: 10.1021/Acs.Jpclett.0C01113 |
0.335 |
|
| 2020 |
Mallory JD, Kolomeisky AB, Igoshin OA. Kinetic control of stationary flux ratios for a wide range of biochemical processes. Proceedings of the National Academy of Sciences of the United States of America. PMID 32265281 DOI: 10.1073/Pnas.1920873117 |
0.335 |
|
| 2020 |
Chaudhury S, Singh D, Kolomeisky AB. Theoretical Investigations of the Dynamics of Chemical Reactions on Nanocatalysts with Multiple Active Sites. The Journal of Physical Chemistry Letters. PMID 32125856 DOI: 10.1021/Acs.Jpclett.0C00316 |
0.374 |
|
| 2020 |
Felipe C, Shin J, Loginova Y, Kolomeisky AB. The effect of obstacles in multi-site protein target search with DNA looping. The Journal of Chemical Physics. 152: 025101. PMID 31941320 DOI: 10.1063/1.5135917 |
0.336 |
|
| 2020 |
Jindal A, Kolomeisky AB, Gupta AK. The role of dynamic defects in transport of interacting molecular motors Journal of Statistical Mechanics: Theory and Experiment. 2020: 043206. DOI: 10.1088/1742-5468/Ab7756 |
0.366 |
|
| 2019 |
Pan Y, Banerjee S, Zagorski K, Shlyakhtenko LS, Kolomeisky AB, Lyubchenko YL. Molecular Model for the Surface-Catalyzed Protein Self-Assembly. The Journal of Physical Chemistry. B. PMID 31867969 DOI: 10.1021/Acs.Jpcb.9B10052 |
0.316 |
|
| 2019 |
Misiura MM, Kolomeisky AB. The Role of Intrinsically Disordered Regions in Acceleration of Protein-Protein Association. The Journal of Physical Chemistry. B. PMID 31804089 DOI: 10.1021/Acs.Jpcb.9B08793 |
0.335 |
|
| 2019 |
Shin J, Kolomeisky AB. Target search on DNA by interacting molecules: First-passage approach. The Journal of Chemical Physics. 151: 125101. PMID 31575173 DOI: 10.1063/1.5123988 |
0.368 |
|
| 2019 |
Wang Q, Kolomeisky AB. Theoretical Analysis of Run Length Distributions for Coupled Motor Proteins. The Journal of Physical Chemistry. B. PMID 31246472 DOI: 10.1021/Acs.Jpcb.9B04710 |
0.373 |
|
| 2019 |
Shin J, Kolomeisky AB. Facilitation of DNA loop formation by protein-DNA non-specific interactions. Soft Matter. PMID 31204761 DOI: 10.1039/C9Sm00671K |
0.341 |
|
| 2019 |
Mallory JD, Kolomeisky AB, Igoshin OA. Trade-Offs between Error, Speed, Noise and Energy Dissipation in Biological Processes with Proofreading. The Journal of Physical Chemistry. B. PMID 31074999 DOI: 10.1021/Acs.Jpcb.9B03757 |
0.32 |
|
| 2019 |
Davtyan A, Kolomeisky AB. Theoretical insights into mechanisms of channel-facilitated molecular transport in the presence of stochastic gating. The Journal of Chemical Physics. 150: 124111. PMID 30927881 DOI: 10.1063/1.5086224 |
0.425 |
|
| 2019 |
Teimouri H, Kolomeisky AB. Theoretical investigation of stochastic clearance of bacteria: first-passage analysis. Journal of the Royal Society, Interface. 16: 20180765. PMID 30890051 DOI: 10.1098/Rsif.2018.0765 |
0.306 |
|
| 2019 |
Gomes L, Midha T, Gupta AK, Kolomeisky AB. The effect of local dissociation on dynamics of interacting molecular motors Journal of Physics a: Mathematical and Theoretical. 52: 365001. DOI: 10.1088/1751-8121/Ab35Bb |
0.382 |
|
| 2019 |
Midha T, Kolomeisky AB, Gupta AK. Theoretical study of network junction models for totally asymmetric exclusion processes with interacting particles Journal of Statistical Mechanics: Theory and Experiment. 2019: 083202. DOI: 10.1088/1742-5468/Ab310D |
0.333 |
|
| 2018 |
Klindziuk A, Kolomeisky AB. Theoretical Investigation of Transcriptional Bursting: A Multi-State Approach. The Journal of Physical Chemistry. B. PMID 30481024 DOI: 10.1021/Acs.Jpcb.8B09676 |
0.341 |
|
| 2018 |
Shin J, Kolomeisky AB. Molecular search with conformational change: One-dimensional discrete-state stochastic model. The Journal of Chemical Physics. 149: 174104. PMID 30409016 DOI: 10.1063/1.5051035 |
0.442 |
|
| 2018 |
Teimouri H, Kolomeisky AB. Discrete-State Stochastic Modeling of Morphogen Gradient Formation. Methods in Molecular Biology (Clifton, N.J.). 1863: 199-221. PMID 30324600 DOI: 10.1007/978-1-4939-8772-6_12 |
0.334 |
|
| 2018 |
Wang Q, Jana B, Diehl MR, Cheung MS, Kolomeisky AB, Onuchic JN. Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30224489 DOI: 10.1073/Pnas.1806688115 |
0.348 |
|
| 2018 |
Shvets AA, Kochugaeva MP, Kolomeisky AB. Mechanisms of Protein Search for Targets on DNA: Theoretical Insights. Molecules (Basel, Switzerland). 23. PMID 30131459 DOI: 10.3390/Molecules23092106 |
0.364 |
|
| 2018 |
Misiura M, Wang Q, Cheung MS, Kolomeisky AB. Correction to "Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins". The Journal of Physical Chemistry. B. PMID 29995413 DOI: 10.1021/Acs.Jpcb.8B06004 |
0.338 |
|
| 2018 |
Misiura MM, Wang Q, Cheung MS, Kolomeisky AB. Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins. The Journal of Physical Chemistry. B. PMID 29630822 DOI: 10.1021/Acs.Jpcb.8B00830 |
0.37 |
|
| 2018 |
Bozorgui B, Kolomeisky AB, Teimouri H. Physical-chemical mechanisms of pattern formation during gastrulation. The Journal of Chemical Physics. 148: 123302. PMID 29604871 DOI: 10.1063/1.4993879 |
0.336 |
|
| 2018 |
Shin J, Kolomeisky AB. Surface-Assisted Dynamic Search Processes. The Journal of Physical Chemistry. B. PMID 29425454 DOI: 10.1021/Acs.Jpcb.7B11958 |
0.385 |
|
| 2018 |
Midha T, Gomes LVF, Kolomeisky AB, Gupta AK. Theoretical investigations of asymmetric simple exclusion processes for interacting oligomers Journal of Statistical Mechanics: Theory and Experiment. 2018: 053209. DOI: 10.1088/1742-5468/Aac139 |
0.447 |
|
| 2018 |
Midha T, Kolomeisky AB, Gupta AK. Effect of interactions for one-dimensional asymmetric exclusion processes under periodic and bath-adapted coupling environment Journal of Statistical Mechanics: Theory and Experiment. 2018: 043205. DOI: 10.1088/1742-5468/Aab022 |
0.302 |
|
| 2017 |
Zhang Y, Kolomeisky AB. Theoretical Investigation of Distributions of Run Lengths for Biological Molecular Motors. The Journal of Physical Chemistry. B. PMID 29058899 DOI: 10.1021/Acs.Jpcb.7B09352 |
0.405 |
|
| 2017 |
Shvets AA, Kolomeisky AB. Mechanism of Genome Interrogation: How CRISPR RNA-Guided Cas9 Proteins Locate Specific Targets on DNA. Biophysical Journal. 113: 1416-1424. PMID 28978436 DOI: 10.1016/J.Bpj.2017.08.013 |
0.338 |
|
| 2017 |
Wang Q, Diehl MR, Jana B, Cheung MS, Kolomeisky AB, Onuchic JN. Molecular origin of the weak susceptibility of kinesin velocity to loads and its relation to the collective behavior of kinesins. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973894 DOI: 10.1073/Pnas.1710328114 |
0.35 |
|
| 2017 |
García-López V, Chen F, Nilewski LG, Duret G, Aliyan A, Kolomeisky AB, Robinson JT, Wang G, Pal R, Tour JM. Molecular machines open cell membranes. Nature. 548: 567-572. PMID 28858304 DOI: 10.1038/Nature23657 |
0.322 |
|
| 2017 |
Zarai Y, Margaliot M, Kolomeisky AB. A deterministic model for one-dimensional excluded flow with local interactions. Plos One. 12: e0182074. PMID 28796838 DOI: 10.1371/Journal.Pone.0182074 |
0.393 |
|
| 2017 |
Kochugaeva MP, Berezhkovskii AM, Kolomeisky AB. Optimal Length of Conformational Transition Region in Protein Search for Targets on DNA. The Journal of Physical Chemistry Letters. PMID 28796515 DOI: 10.1021/Acs.Jpclett.7B01750 |
0.355 |
|
| 2017 |
Banerjee K, Kolomeisky AB, Igoshin OA. Elucidating interplay of speed and accuracy in biological error correction. Proceedings of the National Academy of Sciences of the United States of America. PMID 28465435 DOI: 10.1073/Pnas.1614838114 |
0.306 |
|
| 2017 |
Berezhkovskii AM, Szabo A, Rotbart T, Urbakh M, Kolomeisky AB. Dependence of the Enzymatic Velocity on the Substrate Dissociation Rate. The Journal of Physical Chemistry. B. 121: 3437-3442. PMID 28423908 DOI: 10.1021/Acs.Jpcb.6B09055 |
0.302 |
|
| 2017 |
Kochugaeva MP, Shvets AA, Kolomeisky AB. On the Mechanism of Homology Search by RecA Protein Filaments. Biophysical Journal. 112: 859-867. PMID 28297645 DOI: 10.1016/J.Bpj.2017.01.018 |
0.386 |
|
| 2017 |
Gomes LVF, Kolomeisky AB. Dynamics of relaxation to a stationary state for interacting molecular motors Journal of Physics a: Mathematical and Theoretical. 51: 015601. DOI: 10.1088/1751-8121/Aa9675 |
0.437 |
|
| 2017 |
Kochugaeva MP, Shvets AA, Kolomeisky AB. How Conformational Dynamics Influences the Protein Search for Targets on DNA Biophysical Journal. 112: 314a. DOI: 10.1088/1751-8113/49/44/444004 |
0.383 |
|
| 2017 |
Midha T, Kumar Gupta A, Kolomeisky AB. The effect of side motion in the dynamics of interacting molecular motors Journal of Statistical Mechanics: Theory and Experiment. 2017: 073202. DOI: 10.1088/1742-5468/Aa75E1 |
0.382 |
|
| 2016 |
Misiura MM, Kolomeisky AB. Theoretical Investigation of the Mechanisms of ERK2 Enzymatic Catalysis. The Journal of Physical Chemistry. B. PMID 27649451 DOI: 10.1021/Acs.Jpcb.6B08435 |
0.366 |
|
| 2016 |
Chen J, Pyle JR, Sy Piecco KW, Kolomeisky AB, Landes CF. A Two-Step Method for smFRET Data Analysis. The Journal of Physical Chemistry. B. PMID 27379815 DOI: 10.1021/Acs.Jpcb.6B05697 |
0.323 |
|
| 2016 |
Shvets AA, Kolomeisky AB. Crowding on DNA in Protein Search for Targets. The Journal of Physical Chemistry Letters. PMID 27314905 DOI: 10.1021/Acs.Jpclett.6B00905 |
0.351 |
|
| 2016 |
Qian H, Kjelstrup S, Kolomeisky AB, Bedeaux D. Entropy production in mesoscopic stochastic thermodynamics: nonequilibrium kinetic cycles driven by chemical potentials, temperatures, and mechanical forces. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 28: 153004. PMID 26986039 DOI: 10.1088/0953-8984/28/15/153004 |
0.378 |
|
| 2016 |
Teimouri H, Bozorgui B, Kolomeisky AB. Development of Morphogen Gradients with Spatially Varying Degradation Rates. The Journal of Physical Chemistry. B. 120: 2745-50. PMID 26926113 DOI: 10.1021/Acs.Jpcb.6B00695 |
0.323 |
|
| 2016 |
Teimouri H, Kolomeisky AB. New Model for Understanding Mechanisms of Biological Signaling: Direct Transport via Cytonemes. The Journal of Physical Chemistry Letters. 7: 180-5. PMID 26695836 DOI: 10.1021/Acs.Jpclett.5B02703 |
0.345 |
|
| 2016 |
Teimouri H, Kolomeisky AB. Mechanisms of the formation of biological signaling profiles Journal of Physics a: Mathematical and Theoretical. 49: 483001. DOI: 10.1088/1751-8113/49/48/483001 |
0.329 |
|
| 2016 |
Uppulury K, Kolomeisky AB. Channel-facilitated molecular transport: The role of strength and spatial distribution of interactions Chemical Physics. 481: 34-41. DOI: 10.1016/J.Chemphys.2016.06.012 |
0.387 |
|
| 2015 |
Shvets AA, Kolomeisky AB. Sequence heterogeneity accelerates protein search for targets on DNA. The Journal of Chemical Physics. 143: 245101. PMID 26723711 DOI: 10.1063/1.4937938 |
0.348 |
|
| 2015 |
Shvets A, Kochugaeva M, Kolomeisky AB. The Role of Static and Dynamic Obstacles in the Protein Search for Targets on DNA. The Journal of Physical Chemistry. B. PMID 26618222 DOI: 10.1021/Acs.Jpcb.5B09814 |
0.383 |
|
| 2015 |
García-López V, Chiang PT, Chen F, Ruan G, Martí AA, Kolomeisky AB, Wang G, Tour JM. Unimolecular Submersible Nanomachines. Synthesis, Actuation, and Monitoring. Nano Letters. 15: 8229-39. PMID 26540377 DOI: 10.1021/Acs.Nanolett.5B03764 |
0.318 |
|
| 2015 |
McLaughlin RT, Diehl MR, Kolomeisky AB. Collective dynamics of processive cytoskeletal motors. Soft Matter. 12: 14-21. PMID 26444155 DOI: 10.1039/C5Sm01609F |
0.39 |
|
| 2015 |
Khrenova MG, Grigorenko BL, Kolomeisky AB, Nemukhin AV. Hydrolysis of Guanosine Triphosphate (GTP) by the Ras·GAP Protein Complex: Reaction Mechanism and Kinetic Scheme. The Journal of Physical Chemistry. B. 119: 12838-45. PMID 26374425 DOI: 10.1021/Acs.Jpcb.5B07238 |
0.342 |
|
| 2015 |
Lange M, Kochugaeva M, Kolomeisky AB. Protein search for multiple targets on DNA. The Journal of Chemical Physics. 143: 105102. PMID 26374061 DOI: 10.1063/1.4930113 |
0.362 |
|
| 2015 |
Lange M, Kochugaeva M, Kolomeisky AB. Dynamics of the Protein Search for Targets on DNA in the Presence of Traps. The Journal of Physical Chemistry. B. 119: 12410-6. PMID 26328804 DOI: 10.1021/Acs.Jpcb.5B07303 |
0.38 |
|
| 2015 |
Bozorgui B, Teimouri H, Kolomeisky AB. Theoretical analysis of degradation mechanisms in the formation of morphogen gradients. The Journal of Chemical Physics. 143: 025102. PMID 26178130 DOI: 10.1063/1.4926461 |
0.358 |
|
| 2015 |
Teimouri H, Kolomeisky AB. The role of source delocalization in the development of morphogen gradients. Physical Biology. 12: 026006. PMID 25884250 DOI: 10.1088/1478-3975/12/2/026006 |
0.336 |
|
| 2015 |
Li X, Kolomeisky AB. The role of multifilament structures and lateral interactions in dynamics of cytoskeleton proteins and assemblies. The Journal of Physical Chemistry. B. 119: 4653-61. PMID 25768280 DOI: 10.1021/Acs.Jpcb.5B01219 |
0.397 |
|
| 2015 |
Teimouri H, Kolomeisky AB, Mehrabiani K. Theoretical Analysis of Dynamic Processes for Interacting Molecular Motors. Journal of Physics. a, Mathematical and Theoretical. 48. PMID 25688287 DOI: 10.1088/1751-8113/48/6/065001 |
0.412 |
|
| 2015 |
Agah S, Pasquali M, Kolomeisky AB. Theoretical analysis of selectivity mechanisms in molecular transport through channels and nanopores. The Journal of Chemical Physics. 142: 044705. PMID 25638001 DOI: 10.1063/1.4906234 |
0.386 |
|
| 2015 |
Celis-Garza D, Teimouri H, Kolomeisky AB. Correlations and symmetry of interactions influence collective dynamics of molecular motors Journal of Statistical Mechanics: Theory and Experiment. 2015: P04013. DOI: 10.1088/1742-5468/2015/04/P04013 |
0.424 |
|
| 2014 |
Li X, Kolomeisky AB. Theoretical analysis of microtubule dynamics at all times. The Journal of Physical Chemistry. B. 118: 13777-84. PMID 25390471 DOI: 10.1021/Jp507206F |
0.406 |
|
| 2014 |
Chen J, Poddar NK, Tauzin LJ, Cooper D, Kolomeisky AB, Landes CF. Single-molecule FRET studies of HIV TAR-DNA hairpin unfolding dynamics. The Journal of Physical Chemistry. B. 118: 12130-9. PMID 25254491 DOI: 10.1021/Jp507067P |
0.357 |
|
| 2014 |
Li X, Kolomeisky AB, Valleriani A. Stochastic kinetics on networks: when slow is fast. The Journal of Physical Chemistry. B. 118: 10419-25. PMID 25140607 DOI: 10.1021/Jp506668A |
0.307 |
|
| 2014 |
Wang YQ, Jiang R, Kolomeisky AB, Hu MB. Bulk induced phase transition in driven diffusive systems. Scientific Reports. 4: 5459. PMID 24966084 DOI: 10.1038/Srep05459 |
0.343 |
|
| 2014 |
Li X, Kolomeisky AB, Valleriani A. Pathway structure determination in complex stochastic networks with non-exponential dwell times. The Journal of Chemical Physics. 140: 184102. PMID 24832248 DOI: 10.1063/1.4874113 |
0.34 |
|
| 2014 |
Teimouri H, Kolomeisky AB. Development of morphogen gradient: the role of dimension and discreteness. The Journal of Chemical Physics. 140: 085102. PMID 24588199 DOI: 10.1063/1.4866453 |
0.371 |
|
| 2014 |
Li X, Kolomeisky AB. A new theoretical approach to analyze complex processes in cytoskeleton proteins. The Journal of Physical Chemistry. B. 118: 2966-72. PMID 24571190 DOI: 10.1021/Jp500268Q |
0.412 |
|
| 2014 |
Valleriani A, Li X, Kolomeisky AB. Unveiling the hidden structure of complex stochastic biochemical networks. The Journal of Chemical Physics. 140: 064101. PMID 24527894 DOI: 10.1063/1.4863997 |
0.3 |
|
| 2014 |
Kolomeisky AB, Feng X, Krylov AI. A simple kinetic model for singlet fission: A role of electronic and entropic contributions to macroscopic rates Journal of Physical Chemistry C. 118: 5188-5195. DOI: 10.1021/Jp4128176 |
0.354 |
|
| 2013 |
Uppulury K, Efremov AK, Driver JW, Jamison DK, Diehl MR, Kolomeisky AB. Analysis of Cooperative Behavior in Multiple Kinesins Motor Protein Transport by Varying Structural and Chemical Properties. Cellular and Molecular Bioengineering. 6: 38-47. PMID 24489614 DOI: 10.1007/S12195-012-0260-9 |
0.352 |
|
| 2013 |
Li X, Kolomeisky AB. Mechanisms and topology determination of complex chemical and biological network systems from first-passage theoretical approach. The Journal of Chemical Physics. 139: 144106. PMID 24116602 DOI: 10.1063/1.4824392 |
0.353 |
|
| 2013 |
Kolomeisky AB. Motor proteins and molecular motors: how to operate machines at the nanoscale. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 25: 463101. PMID 24100357 DOI: 10.1088/0953-8984/25/46/463101 |
0.361 |
|
| 2013 |
Panja D, Barkema GT, Kolomeisky AB. Through the eye of the needle: recent advances in understanding biopolymer translocation. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 25: 413101. PMID 24025200 DOI: 10.1088/0953-8984/25/41/413101 |
0.353 |
|
| 2013 |
Kolomeisky AB. Physics of protein motility and motor proteins. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 25: 370301. PMID 23945135 DOI: 10.1088/0953-8984/25/37/370301 |
0.365 |
|
| 2013 |
Li X, Kolomeisky AB. Theoretical analysis of microtubules dynamics using a physical-chemical description of hydrolysis. The Journal of Physical Chemistry. B. 117: 9217-23. PMID 23844777 DOI: 10.1021/Jp404794F |
0.443 |
|
| 2013 |
Kolomeisky AB. Mechanisms of protein binding to DNA: statistical interactions are important. Biophysical Journal. 104: 966-7. PMID 23473478 DOI: 10.1016/J.Bpj.2013.01.039 |
0.31 |
|
| 2013 |
Teimouri H, Kolomeisky AB. All-time dynamics of continuous-time random walks on complex networks. The Journal of Chemical Physics. 138: 084110. PMID 23464143 DOI: 10.1063/1.4792726 |
0.368 |
|
| 2013 |
Jiang R, Wang YQ, Kolomeisky AB, Huang W, Hu MB, Wu QS. Phase diagram structures in a periodic one-dimensional exclusion process. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 012107. PMID 23410283 DOI: 10.1103/Physreve.87.012107 |
0.345 |
|
| 2013 |
Veksler A, Kolomeisky AB. Speed-selectivity paradox in the protein search for targets on DNA: is it real or not? The Journal of Physical Chemistry. B. 117: 12695-701. PMID 23316873 DOI: 10.1021/Jp311466F |
0.374 |
|
| 2013 |
Chu PL, Wang LY, Khatua S, Kolomeisky AB, Link S, Tour JM. Synthesis and single-molecule imaging of highly mobile adamantane-wheeled nanocars. Acs Nano. 7: 35-41. PMID 23189917 DOI: 10.1021/Nn304584A |
0.334 |
|
| 2012 |
Uppulury K, Efremov AK, Driver JW, Jamison DK, Diehl MR, Kolomeisky AB. How the interplay between mechanical and nonmechanical interactions affects multiple kinesin dynamics. The Journal of Physical Chemistry. B. 116: 8846-55. PMID 22724436 DOI: 10.1021/Jp304018B |
0.375 |
|
| 2012 |
Kolomeisky AB, Veksler A. How to accelerate protein search on DNA: location and dissociation. The Journal of Chemical Physics. 136: 125101. PMID 22462896 DOI: 10.1063/1.3697763 |
0.333 |
|
| 2012 |
Padinhateeri R, Kolomeisky AB, Lacoste D. Random hydrolysis controls the dynamic instability of microtubules. Biophysical Journal. 102: 1274-83. PMID 22455910 DOI: 10.1016/J.Bpj.2011.12.059 |
0.397 |
|
| 2012 |
Akimov AV, Kolomeisky AB. Unidirectional Rolling Motion of Nanocars Induced by Electric Field The Journal of Physical Chemistry C. 116: 22595-22601. DOI: 10.1021/Jp306938B |
0.66 |
|
| 2012 |
Akimov AV, Williams C, Kolomeisky AB. Charge transfer and chemisorption of fullerene molecules on metal surfaces: Application to dynamics of nanocars Journal of Physical Chemistry C. 116: 13816-13826. DOI: 10.1021/Jp303549U |
0.644 |
|
| 2011 |
Akimov AV, Kolomeisky AB. Recursive Taylor Series Expansion Method for Rigid-Body Molecular Dynamics. Journal of Chemical Theory and Computation. 7: 3062-71. PMID 26598150 DOI: 10.1021/Ct200334E |
0.661 |
|
| 2011 |
Driver JW, Jamison DK, Uppulury K, Rogers AR, Kolomeisky AB, Diehl MR. Productive cooperation among processive motors depends inversely on their mechanochemical efficiency. Biophysical Journal. 101: 386-95. PMID 21767491 DOI: 10.1016/J.Bpj.2011.05.067 |
0.342 |
|
| 2011 |
Kolomeisky AB. Michaelis-Menten relations for complex enzymatic networks. The Journal of Chemical Physics. 134: 155101. PMID 21513417 DOI: 10.1063/1.3580564 |
0.328 |
|
| 2011 |
Akimov A, Kolomeisky AB. DYNAMICS OF SINGLE-MOLECULE ROTATIONS ON SURFACES DEPEND ON SYMMETRY, INTERACTIONS AND MOLECULAR SIZES. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 115: 125-131. PMID 21278909 DOI: 10.1021/Jp108062P |
0.674 |
|
| 2011 |
Kolomeisky AB. Physics of protein-DNA interactions: mechanisms of facilitated target search. Physical Chemistry Chemical Physics : Pccp. 13: 2088-95. PMID 21113556 DOI: 10.1039/C0Cp01966F |
0.346 |
|
| 2011 |
Schulz JHP, Kolomeisky AB, Frey E. Current reversal and exclusion processes with history-dependent random walks Epl. 95. DOI: 10.1209/0295-5075/95/30004 |
0.384 |
|
| 2011 |
Kolomeisky AB. Formation of a Morphogen Gradient: Acceleration by Degradation The Journal of Physical Chemistry Letters. 2: 1502-1505. DOI: 10.1021/Jz2004914 |
0.329 |
|
| 2011 |
Akimov AV, Kolomeisky AB. Molecular Dynamics Study of Crystalline Molecular Gyroscopes The Journal of Physical Chemistry C. 115: 13584-13591. DOI: 10.1021/Jp201981V |
0.676 |
|
| 2011 |
Wang R, Kolomeisky AB, Liu M. Spontaneous symmetry breaking on a mutiple-channel hollow cylinder Physics Letters A. 375: 318-323. DOI: 10.1016/J.Physleta.2010.11.006 |
0.429 |
|
| 2011 |
Driver JW, Uppulury K, Jamison DK, Kolomeisky AB, Diehl MR. A Micromechanical Model of Cargo Transport by Multiple Microtubule Motors Biophysical Journal. 100: 121a. DOI: 10.1016/J.Bpj.2010.12.866 |
0.382 |
|
| 2011 |
Kolomeisky AB, Uppulury K. How Interactions Control Molecular Transport in Channels Biophysical Journal. 100: 578a. DOI: 10.1016/J.Bpj.2010.12.3343 |
0.386 |
|
| 2010 |
Konyukhov SS, Kupchenko IV, Moskovsky AA, Nemukhin AV, Akimov AV, Kolomeisky AB. Rigid-Body Molecular Dynamics of Fullerene-Based Nanocars on Metallic Surfaces. Journal of Chemical Theory and Computation. 6: 2581-90. PMID 26616062 DOI: 10.1021/Ct100101Y |
0.684 |
|
| 2010 |
Driver JW, Rogers AR, Jamison DK, Das RK, Kolomeisky AB, Diehl MR. Coupling between motor proteins determines dynamic behaviors of motor protein assemblies. Physical Chemistry Chemical Physics : Pccp. 12: 10398-405. PMID 20582368 DOI: 10.1039/C0Cp00117A |
0.37 |
|
| 2010 |
Lin J, Kolomeisky A, Meller A. Helix-coil kinetics of individual polyadenylic acid molecules in a protein channel. Physical Review Letters. 104: 158101. PMID 20482020 DOI: 10.1103/Physrevlett.104.158101 |
0.345 |
|
| 2010 |
Das RK, Kolomeisky AB. Facilitated search of proteins on DNA: correlations are important. Physical Chemistry Chemical Physics : Pccp. 12: 2999-3004. PMID 20449392 DOI: 10.1039/B921303A |
0.361 |
|
| 2010 |
Artyomov MN, Morozov AY, Kolomeisky AB. Dynamics of molecular motors in reversible burnt-bridge models Condensed Matter Physics. 13: 23801-23818. DOI: 10.5488/Cmp.13.23801 |
0.42 |
|
| 2010 |
Kupchenko IV, Moskovsky AA, Nemukhin AV, Kolomeisky AB. On the Mechanism of Carborane Diffusion on a Hydrated Silica Surface The Journal of Physical Chemistry C. 115: 108-111. DOI: 10.1021/Jp1077592 |
0.346 |
|
| 2010 |
Kolomeisky AB, Das RK, Diehl MR, Driver JW, Jameson KD, Rogers AR. Iinteractions between Motor Proteins can Explain Collective Transport of Kinesins Biophysical Journal. 98: 431a-432a. DOI: 10.1016/J.Bpj.2009.12.2340 |
0.406 |
|
| 2010 |
Lin J, Kolomeisky A, Meller A. Single Molecule Studies of Polyadenylic Acid Helix-Coil Kinetics using Nanopore Biophysical Journal. 98: 422a-423a. DOI: 10.1016/J.Bpj.2009.12.2287 |
0.399 |
|
| 2009 |
Kolomeisky AB. Continuous-time random walks at all times. The Journal of Chemical Physics. 131: 234114. PMID 20025321 DOI: 10.1063/1.3276704 |
0.372 |
|
| 2009 |
Das RK, Kolomeisky AB. Dynamic properties of molecular motors in the divided-pathway model. Physical Chemistry Chemical Physics : Pccp. 11: 4815-20. PMID 19506756 DOI: 10.1039/B901214A |
0.412 |
|
| 2009 |
Khatua S, Guerrero JM, Claytor K, Vives G, Kolomeisky AB, Tour JM, Link S. Micrometer-scale translation and monitoring of individual nanocars on glass. Acs Nano. 3: 351-6. PMID 19236071 DOI: 10.1021/Nn800798A |
0.317 |
|
| 2009 |
Tierney HL, Baber AE, Sykes ECH, Akimov A, Kolomeisky AB. Dynamics of thioether molecular rotors: Effects of surface interactions and chain flexibility Journal of Physical Chemistry C. 113: 10913-10920. DOI: 10.1021/Jp9017844 |
0.685 |
|
| 2009 |
Wanunu M, Kolomeisky A, Meller A. What Is The Nature Of Interactions Between DNA And Nanopores Fabricated In Thin Silicon Nitride Membranes? Biophysical Journal. 96: 649a. DOI: 10.1016/J.Bpj.2008.12.3860 |
0.304 |
|
| 2009 |
Tsekouras K, Kolomeisky AB. Investigation Of Multiparticle Motor Protein Dynamics Using Coupled Exclusion Processes Biophysical Journal. 96: 511a. DOI: 10.1016/J.Bpj.2008.12.2632 |
0.445 |
|
| 2008 |
Akimov AV, Nemukhin AV, Moskovsky AA, Kolomeisky AB, Tour JM. Molecular Dynamics of Surface-Moving Thermally Driven Nanocars. Journal of Chemical Theory and Computation. 4: 652-6. PMID 26620940 DOI: 10.1021/Ct7002594 |
0.684 |
|
| 2008 |
Foulaadvand ME, Kolomeisky AB, Teymouri H. Asymmetric exclusion processes with disorder: effect of correlations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 061116. PMID 19256811 DOI: 10.1103/Physreve.78.061116 |
0.389 |
|
| 2008 |
Tsyboulski DA, Bachilo SM, Kolomeisky AB, Weisman RB. Translational and rotational dynamics of individual single-walled carbon nanotubes in aqueous suspension. Acs Nano. 2: 1770-6. PMID 19206415 DOI: 10.1021/Nn800364R |
0.3 |
|
| 2008 |
Das RK, Kolomeisky AB. Spatial fluctuations affect the dynamics of motor proteins. The Journal of Physical Chemistry. B. 112: 11112-21. PMID 18686990 DOI: 10.1021/Jp800982B |
0.406 |
|
| 2008 |
Das RK, Kolomeisky AB. Interaction between motor domains can explain the complex dynamics of heterodimeric kinesins. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 061912. PMID 18643305 DOI: 10.1103/Physreve.77.061912 |
0.381 |
|
| 2008 |
Artyomov MN, Morozov AY, Kolomeisky AB. Molecular motors interacting with their own tracks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 040901. PMID 18517571 DOI: 10.1103/Physreve.77.040901 |
0.443 |
|
| 2008 |
Cherstvy AG, Kolomeisky AB, Kornyshev AA. Protein--DNA interactions: reaching and recognizing the targets. The Journal of Physical Chemistry. B. 112: 4741-50. PMID 18358020 DOI: 10.1021/Jp076432E |
0.33 |
|
| 2008 |
Kolomeisky AB, Kotsev S. Effect of interactions on molecular fluxes and fluctuations in the transport across membrane channels. The Journal of Chemical Physics. 128: 085101. PMID 18315084 DOI: 10.1063/1.2831801 |
0.404 |
|
| 2008 |
Kolomeisky AB. How polymers translocate through pores: memory is important. Biophysical Journal. 94: 1547-8. PMID 17965138 DOI: 10.1529/Biophysj.107.122770 |
0.337 |
|
| 2008 |
Tsekouras K, Kolomeisky AB. Inhomogeneous coupling in two-channel asymmetric simple exclusion processes Journal of Physics a: Mathematical and Theoretical. 41: 095002. DOI: 10.1088/1751-8113/41/9/095002 |
0.45 |
|
| 2008 |
Tsekouras K, Kolomeisky AB. Parallel coupling of symmetric and asymmetric exclusion processes Journal of Physics a: Mathematical and Theoretical. 41: 465001. DOI: 10.1088/1751-8113/41/46/465001 |
0.416 |
|
| 2007 |
Kotsev S, Kolomeisky AB. Translocation of polymers with folded configurations across nanopores. The Journal of Chemical Physics. 127: 185103. PMID 18020666 DOI: 10.1063/1.2800008 |
0.316 |
|
| 2007 |
Morozov AY, Pronina E, Kolomeisky AB, Artyomov MN. Solutions of burnt-bridge models for molecular motor transport. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 75: 031910. PMID 17500729 DOI: 10.1103/Physreve.75.031910 |
0.795 |
|
| 2007 |
Kolomeisky AB. Channel-facilitated molecular transport across membranes: attraction, repulsion, and asymmetry. Physical Review Letters. 98: 048105. PMID 17358819 DOI: 10.1103/Physrevlett.98.048105 |
0.369 |
|
| 2007 |
Hornblower B, Coombs A, Whitaker RD, Kolomeisky A, Picone SJ, Meller A, Akeson M. Single-molecule analysis of DNA-protein complexes using nanopores. Nature Methods. 4: 315-7. PMID 17339846 DOI: 10.1038/Nmeth1021 |
0.314 |
|
| 2007 |
Kolomeisky AB, Fisher ME. Molecular motors: a theorist's perspective. Annual Review of Physical Chemistry. 58: 675-95. PMID 17163836 DOI: 10.1146/Annurev.Physchem.58.032806.104532 |
0.398 |
|
| 2007 |
Pronina E, Kolomeisky AB. Spontaneous symmetry breaking in two-channel asymmetric exclusion processes with narrow entrances Journal of Physics a: Mathematical and Theoretical. 40: 2275-2286. DOI: 10.1088/1751-8113/40/10/004 |
0.784 |
|
| 2007 |
Morozov AY, Kolomeisky AB. Transport of molecular motor dimers in burnt-bridge models Journal of Statistical Mechanics: Theory and Experiment. 2007: P12008-P12008. DOI: 10.1088/1742-5468/2007/12/P12008 |
0.439 |
|
| 2007 |
Artyomov MN, Morozov AY, Pronina E, Kolomeisky AB. Dynamic properties of molecular motors in burnt-bridge models Journal of Statistical Mechanics: Theory and Experiment. 2007: P08002-P08002. DOI: 10.1088/1742-5468/2007/08/P08002 |
0.798 |
|
| 2006 |
Kotsev S, Kolomeisky AB. Effect of orientation in translocation of polymers through nanopores. The Journal of Chemical Physics. 125: 084906. PMID 16965056 DOI: 10.1063/1.2338539 |
0.33 |
|
| 2006 |
Stukalin EB, Kolomeisky AB. Transport of single molecules along the periodic parallel lattices with coupling. The Journal of Chemical Physics. 124: 204901. PMID 16774378 DOI: 10.1063/1.2194011 |
0.402 |
|
| 2006 |
Matysiak S, Montesi A, Pasquali M, Kolomeisky AB, Clementi C. Dynamics of polymer translocation through nanopores: theory meets experiment. Physical Review Letters. 96: 118103. PMID 16605877 DOI: 10.1103/Physrevlett.96.118103 |
0.367 |
|
| 2006 |
Stukalin EB, Kolomeisky AB. Dynamic transitions in coupled motor proteins. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 73: 031922. PMID 16605573 DOI: 10.1103/Physreve.73.031922 |
0.423 |
|
| 2006 |
Stukalin EB, Kolomeisky AB. ATP hydrolysis stimulates large length fluctuations in single actin filaments. Biophysical Journal. 90: 2673-85. PMID 16443647 DOI: 10.1529/Biophysj.105.074211 |
0.322 |
|
| 2006 |
Pronina E, Kolomeisky AB. Asymmetric coupling in two-channel simple exclusion processes Physica a: Statistical Mechanics and Its Applications. 372: 12-21. DOI: 10.1016/J.Physa.2006.05.006 |
0.78 |
|
| 2005 |
Son J, Orkoulas G, Kolomeisky AB. Monte Carlo simulations of rigid biopolymer growth processes. The Journal of Chemical Physics. 123: 124902. PMID 16392522 DOI: 10.1063/1.2013248 |
0.343 |
|
| 2005 |
Stukalin EB, Phillips H, Kolomeisky AB. Coupling of two motor proteins: a new motor can move faster. Physical Review Letters. 94: 238101. PMID 16090504 DOI: 10.1103/Physrevlett.94.238101 |
0.367 |
|
| 2005 |
Pan W, Kolomeisky AB, Vekilov PG. Nucleation of ordered solid phases of proteins via a disordered high-density state: phenomenological approach. The Journal of Chemical Physics. 122: 174905. PMID 15910067 DOI: 10.1063/1.1887168 |
0.354 |
|
| 2005 |
Kolomeisky AB, Stukalin EB, Popov AA. Understanding mechanochemical coupling in kinesins using first-passage-time processes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 031902. PMID 15903454 DOI: 10.1103/Physreve.71.031902 |
0.404 |
|
| 2005 |
Stukalin EB, Kolomeisky AB. Polymerization dynamics of double-stranded biopolymers: chemical kinetic approach. The Journal of Chemical Physics. 122: 104903. PMID 15836354 DOI: 10.1063/1.1858859 |
0.333 |
|
| 2005 |
Lakatos G, Chou T, Kolomeisky A. Steady-state properties of a totally asymmetric exclusion process with periodic structure. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 011103. PMID 15697576 DOI: 10.1103/Physreve.71.011103 |
0.384 |
|
| 2005 |
Pronina E, Kolomeisky AB. Theoretical investigation of totally asymmetric exclusion processes on lattices with junctions Journal of Statistical Mechanics: Theory and Experiment. 2005: P07010-P07010. DOI: 10.1088/1742-5468/2005/07/P07010 |
0.779 |
|
| 2005 |
Kolomeisky AB, Phillips H. Dynamic properties of motor proteins with two subunits Journal of Physics: Condensed Matter. 17: S3887-S3899. DOI: 10.1088/0953-8984/17/47/017 |
0.407 |
|
| 2005 |
Artyomov MN, Kolomeisky AB. Thermodynamics and phase transitions of electrolytes on lattices with different discretization parameters Molecular Physics. 103: 2863-2872. DOI: 10.1080/00268970500142683 |
0.376 |
|
| 2004 |
Stukalin EB, Kolomeisky AB. Simple growth models of rigid multifilament biopolymers. The Journal of Chemical Physics. 121: 1097-104. PMID 15260645 DOI: 10.1063/1.1759316 |
0.324 |
|
| 2004 |
Shaw LB, Kolomeisky AB, Lee KH. Local inhomogeneity in asymmetric simple exclusion processes with extended objects Journal of Physics a: Mathematical and General. 37: 2105-2113. DOI: 10.1088/0305-4470/37/6/010 |
0.412 |
|
| 2004 |
Pronina E, Kolomeisky AB. Two-channel totally asymmetric simple exclusion processes Journal of Physics a: Mathematical and General. 37: 9907-9918. DOI: 10.1088/0305-4470/37/42/005 |
0.778 |
|
| 2003 |
Popkov V, Rákos A, Willmann RD, Kolomeisky AB, Schütz GM. Localization of shocks in driven diffusive systems without particle number conservation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 066117. PMID 16241314 DOI: 10.1103/Physreve.67.066117 |
0.341 |
|
| 2003 |
Kobelev V, Kolomeisky AB, Panagiotopoulos AZ. Thermodynamics of electrolytes on anisotropic lattices. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 066110. PMID 14754272 DOI: 10.1103/Physreve.68.066110 |
0.337 |
|
| 2003 |
Kolomeisky AB, Fisher ME. A simple kinetic model describes the processivity of myosin-v. Biophysical Journal. 84: 1642-50. PMID 12609867 DOI: 10.1016/S0006-3495(03)74973-X |
0.381 |
|
| 2003 |
Mirin N, Kolomeisky AB. Effect of Detachments in Asymmetric Simple Exclusion Processes Journal of Statistical Physics. 110: 811-823. DOI: 10.1023/A:1022163903473 |
0.428 |
|
| 2002 |
Kobelev V, Kolomeisky AB. Anisotropic lattice models of electrolytes The Journal of Chemical Physics. 117: 8879-8885. DOI: 10.1063/1.1516215 |
0.345 |
|
| 2002 |
Kobelev V, Kolomeisky AB, Fisher ME. Lattice models of ionic systems Journal of Chemical Physics. 116: 7589-7598. DOI: 10.1063/1.1464827 |
0.336 |
|
| 2001 |
Fisher ME, Kolomeisky AB. Simple mechanochemistry describes the dynamics of kinesin molecules. Proceedings of the National Academy of Sciences of the United States of America. 98: 7748-53. PMID 11427717 DOI: 10.1073/Pnas.141080498 |
0.317 |
|
| 2001 |
Kolomeisky AB. Exact results for parallel-chain kinetic models of biological transport The Journal of Chemical Physics. 115: 7253-7259. DOI: 10.1063/1.1405446 |
0.359 |
|
| 2000 |
Kolomeisky AB, Fisher ME. Extended kinetic models with waiting-time distributions: Exact results Journal of Chemical Physics. 113: 10867-10877. DOI: 10.1063/1.1326912 |
0.354 |
|
| 2000 |
Kolomeisky AB, Fisher ME. Periodic sequential kinetic models with jumping, branching and deaths Physica a: Statistical Mechanics and Its Applications. 279: 1-20. DOI: 10.1016/S0378-4371(99)00586-5 |
0.371 |
|
| 1999 |
Fisher ME, Kolomeisky AB. The force exerted by a molecular motor. Proceedings of the National Academy of Sciences of the United States of America. 96: 6597-602. PMID 10359757 DOI: 10.1073/Pnas.96.12.6597 |
0.358 |
|
| 1999 |
Kolomeisky AB, Widom B. Model of the hydrophobic interaction Faraday Discussions. 112: 81-89. DOI: 10.1039/A809308C |
0.317 |
|
| 1999 |
Fisher ME, Kolomeisky AB. Molecular motors and the forces they exert Physica a: Statistical Mechanics and Its Applications. 274: 241-266. DOI: 10.1016/S0378-4371(99)00389-1 |
0.385 |
|
| 1998 |
Kolomeisky AB. Asymmetric simple exclusion model with local inhomogeneity Journal of Physics a: Mathematical and General. 31: 1153-1164. DOI: 10.1088/0305-4470/31/4/006 |
0.374 |
|
| 1998 |
Kolomeisky AB, Schütz GM, Kolomeisky EB, Straley JP. Phase diagram of one-dimensional driven lattice gases with open boundaries Journal of Physics a: Mathematical and General. 31: 6911-6919. DOI: 10.1088/0305-4470/31/33/003 |
0.373 |
|
| 1998 |
Kolomeisky AB, Widom B. A Simplified “Ratchet” Model of Molecular Motors Journal of Statistical Physics. 93: 633-645. DOI: 10.1023/B:Joss.0000033246.14231.E1 |
0.345 |
|
| 1997 |
Kolomeisky AB. Exact solutions for a partially asymmetric exclusion model with two species Physica a: Statistical Mechanics and Its Applications. 245: 523-533. DOI: 10.1016/S0378-4371(97)00332-4 |
0.324 |
|
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