Axel Brunger, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
crystallography, synaptic neurotransmission
Website:
http://atbweb.stanford.edu

147 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lai Y, Zhao C, Tian Z, Wang C, Fan J, Hu X, Tu J, Li T, Leitz J, Pfuetzner RA, Liu Z, Zhang S, Su Z, Burré J, Li D, ... ... Brunger AT, et al. Neutral lysophosphatidylcholine mediates α-synuclein-induced synaptic vesicle clustering. Proceedings of the National Academy of Sciences of the United States of America. 120: e2310174120. PMID 37883437 DOI: 10.1073/pnas.2310174120  0.764
2022 Jaczynska K, Esquivies L, Pfuetzner RA, Alten B, Brewer KD, Zhou Q, Kavalali ET, Brunger AT, Rizo J. Analysis of tripartite Synaptotagmin-1-SNARE-complexin-1 complexes in solution. Febs Open Bio. PMID 36305864 DOI: 10.1002/2211-5463.13503  0.766
2022 Brunger AT, Leitz J. The Core Complex of the Ca-Triggered Presynaptic Fusion Machinery. Journal of Molecular Biology. 167853. PMID 36243149 DOI: 10.1016/j.jmb.2022.167853  0.737
2022 Yang K, Wang C, Kreutzberger AJB, Ojha R, Kuivanen S, Couoh-Cardel S, Muratcioglu S, Eisen TJ, White KI, Held RG, Subramanian S, Marcus K, Pfuetzner RA, Esquivies L, Doyle CA, ... ... Brunger AT, et al. Nanomolar inhibition of SARS-CoV-2 infection by an unmodified peptide targeting the prehairpin intermediate of the spike protein. Proceedings of the National Academy of Sciences of the United States of America. 119: e2210990119. PMID 36122200 DOI: 10.1073/pnas.2210990119  0.724
2022 Yang K, Wang C, Kreutzberger AJB, Ojha R, Kuivanen S, Couoh-Cardel S, Muratcioglu S, Eisen TJ, White KI, Held RG, Subramanian S, Marcus K, Pfuetzner RA, Esquivies L, Doyle CA, ... ... Brunger AT, et al. Nanomolar inhibition of SARS-CoV-2 infection by an unmodified peptide targeting the pre-hairpin intermediate of the spike protein. Biorxiv : the Preprint Server For Biology. PMID 35982670 DOI: 10.1101/2022.08.11.503553  0.725
2022 Lai Y, Tuvim MJ, Leitz J, Peters J, Pfuetzner RA, Esquivies L, Zhou Q, Czako B, Cross JB, Jones P, Dickey BF, Brunger AT. Screening of Hydrocarbon-Stapled Peptides for Inhibition of Calcium-Triggered Exocytosis. Frontiers in Pharmacology. 13: 891041. PMID 35814209 DOI: 10.3389/fphar.2022.891041  0.793
2022 Yang K, Wang C, White KI, Pfuetzner RA, Esquivies L, Brunger AT. Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle. Proceedings of the National Academy of Sciences of the United States of America. 119: e2119467119. PMID 35363556 DOI: 10.1073/pnas.2119467119  0.668
2022 Peters JJ, Leitz J, Guo Q, Beck F, Baumeister W, Brunger AT. A feature-guided, focused 3D signal permutation method for subtomogram averaging. Journal of Structural Biology. 214: 107851. PMID 35346811 DOI: 10.1016/j.jsb.2022.107851  0.767
2022 Lai Y, Fois G, Flores JR, Tuvim MJ, Zhou Q, Yang K, Leitz J, Peters J, Zhang Y, Pfuetzner RA, Esquivies L, Jones P, Frick M, Dickey BF, Brunger AT. Inhibition of calcium-triggered secretion by hydrocarbon-stapled peptides. Nature. 603: 949-956. PMID 35322233 DOI: 10.1038/s41586-022-04543-1  0.792
2022 Moore PB, Hendrickson WA, Henderson R, Brunger AT. The protein-folding problem: Not yet solved. Science (New York, N.Y.). 375: 507. PMID 35113705 DOI: 10.1126/science.abn9422  0.406
2021 Peters JJ, Leitz J, Oses-Prieto JA, Burlingame AL, Brunger AT. Molecular Characterization of AMPA-Receptor-Containing Vesicles. Frontiers in Molecular Neuroscience. 14: 754631. PMID 34720876 DOI: 10.3389/fnmol.2021.754631  0.793
2021 Chen Q, Hao M, Wang L, Li L, Chen Y, Shao X, Tian Z, Pfuetzner RA, Zhong Q, Brunger AT, Guan JL, Diao J. Prefused lysosomes cluster on autophagosomes regulated by VAMP8. Cell Death & Disease. 12: 939. PMID 34645799 DOI: 10.1038/s41419-021-04243-0  0.562
2020 Alten B, Zhou Q, Shin OH, Esquivies L, Lin PY, White KI, Sun R, Chung WK, Monteggia LM, Brunger AT, Kavalali ET. Role of Aberrant Spontaneous Neurotransmission in SNAP25-Associated Encephalopathies. Neuron. PMID 33147442 DOI: 10.1016/j.neuron.2020.10.012  0.75
2020 Khalaj AJ, Sterky FH, Sclip A, Schwenk J, Brunger AT, Fakler B, Südhof TC. Deorphanizing FAM19A proteins as pan-neurexin ligands with an unusual biosynthetic binding mechanism. The Journal of Cell Biology. 219. PMID 32706374 DOI: 10.1083/jcb.202004164  0.466
2019 Wilson SC, White KI, Zhou Q, Pfuetzner RA, Choi UB, Südhof TC, Brunger AT. Structures of neurexophilin-neurexin complexes reveal a regulatory mechanism of alternative splicing. The Embo Journal. e101603. PMID 31566781 DOI: 10.15252/Embj.2019101603  0.738
2019 Brose N, Brunger A, Cafiso D, Chapman ER, Diao J, Hughson FM, Jackson MB, Jahn R, Lindau M, Ma C, Rizo J, Shin YK, Söllner TH, Tamm L, Yoon TY, et al. Synaptic vesicle fusion: today and beyond. Nature Structural & Molecular Biology. 26: 663-668. PMID 31384060 DOI: 10.1038/S41594-019-0277-Z  0.57
2019 Brunger AT, Choi UB, Lai Y, Leitz J, White KI, Zhou Q. The pre-synaptic fusion machinery. Current Opinion in Structural Biology. 54: 179-188. PMID 30986753 DOI: 10.1016/J.Sbi.2019.03.007  0.823
2019 Uervirojnangkoorn M, Lyubimov AY, Zhou Q, Weis WI, Brunger AT. Resolving indexing ambiguities in X-ray free-electron laser diffraction patterns. Acta Crystallographica. Section D, Structural Biology. 75: 234-241. PMID 30821711 DOI: 10.1107/S2059798318013177  0.773
2019 Mendez D, Weis W, Brunger A, Wakatsuki S, Sauter N. Processing simultaneously collected MAD data from two closely spaced (90 eV) wavelengths measured at an X-ray free-electron laser Acta Crystallographica Section a Foundations and Advances. 75: a242-a242. DOI: 10.1107/S0108767319097617  0.638
2018 White KI, Zhao M, Choi UB, Pfuetzner RA, Brunger AT. Structural principles of SNARE complex recognition by the AAA+ protein NSF. Elife. 7. PMID 30198481 DOI: 10.7554/Elife.38888  0.61
2018 Choi UB, Zhao M, White KI, Pfuetzner RA, Esquivies L, Zhou Q, Brunger AT. NSF-mediated disassembly of on and off-pathway SNARE complexes and inhibition by complexin. Elife. 7. PMID 29985126 DOI: 10.7554/Elife.36497  0.778
2018 Brunger AT, Choi UB, Lai Y, Leitz J, Zhou Q. Molecular Mechanisms of Fast Neurotransmitter Release. Annual Review of Biophysics. 47: 469-497. PMID 29792815 DOI: 10.1146/Annurev-Biophys-070816-034117  0.81
2018 Brunger AT, Leitz J, Zhou Q, Choi UB, Lai Y. Ca-Triggered Synaptic Vesicle Fusion Initiated by Release of Inhibition. Trends in Cell Biology. PMID 29706534 DOI: 10.1016/J.Tcb.2018.03.004  0.812
2018 Zhou Q, Zhou P, Südhof TC, Brunger AT. Molecular Mechanisms Controlling Neurotransmitter Release by the Primed SNARE-complexin-Synaptotagmin Complex Biophysical Journal. 114: 554a-555a. DOI: 10.1016/J.Bpj.2017.11.3029  0.719
2018 Brandon Choi U, Zhao M, White KI, Zhou Q, Pfuetzner R, Brunger AT. Single SNARE Complex Recycling By NSF Biophysical Journal. 114: 282a. DOI: 10.1016/J.Bpj.2017.11.1620  0.747
2018 Brunger A. Molecular Mechanisms of Synaptic Vesicle Priming Biophysical Journal. 114: 196a. DOI: 10.1016/J.Bpj.2017.11.1095  0.339
2017 Zhou Q, Zhou P, Wang AL, Wu D, Zhao M, Südhof TC, Brunger AT. The primed SNARE-complexin-synaptotagmin complex for neuronal exocytosis. Nature. PMID 28813412 DOI: 10.1038/Nature23484  0.818
2017 Lai Y, Choi UB, Leitz J, Rhee HJ, Lee C, Altas B, Zhao M, Pfuetzner RA, Wang AL, Brose N, Rhee J, Brunger AT. Molecular Mechanisms of Synaptic Vesicle Priming by Munc13 and Munc18. Neuron. 95: 591-607.e10. PMID 28772123 DOI: 10.1016/J.Neuron.2017.07.004  0.788
2017 Gipson P, Fukuda Y, Danev R, Lai Y, Chen DH, Baumeister W, Brunger AT. Morphologies of synaptic protein membrane fusion interfaces. Proceedings of the National Academy of Sciences of the United States of America. PMID 28739947 DOI: 10.1073/Pnas.1708492114  0.329
2017 Zhao M, Choi U, Brunger A. Mechanistic Insights into NSF Mediated SNARE Complex Disassembly Biophysical Journal. 112: 31a. DOI: 10.1016/J.Bpj.2016.11.203  0.655
2016 Young ID, Ibrahim M, Chatterjee R, Gul S, Fuller FD, Koroidov S, Brewster AS, Tran R, Alonso-Mori R, Kroll T, Michels-Clark T, Laksmono H, Sierra RG, Stan CA, Hussein R, ... ... Brunger AT, et al. Structure of photosystem II and substrate binding at room temperature. Nature. PMID 27871088 DOI: 10.1038/Nature20161  0.701
2016 Gong J, Lai Y, Li X, Wang M, Leitz J, Hu Y, Zhang Y, Choi UB, Cipriano D, Pfuetzner RA, Südhof TC, Yang X, Brunger AT, Diao J. C-terminal domain of mammalian complexin-1 localizes to highly curved membranes. Proceedings of the National Academy of Sciences of the United States of America. 113: E7590-E7599. PMID 27821736 DOI: 10.1073/Pnas.1609917113  0.787
2016 Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Zhou Q, Zhao M, Brewster AS, Michels-Clark T, Holton JM, Sauter NK, Weis WI, Brunger AT. Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. Elife. 5. PMID 27731796 DOI: 10.7554/Elife.18740  0.78
2016 Colletier JP, Sawaya MR, Gingery M, Rodriguez JA, Cascio D, Brewster AS, Michels-Clark T, Hice RH, Coquelle N, Boutet S, Williams GJ, Messerschmidt M, DePonte DP, Sierra RG, Laksmono H, ... ... Brunger AT, et al. De novo phasing with X-ray laser reveals mosquito larvicide BinAB structure. Nature. PMID 27680699 DOI: 10.1038/Nature19825  0.417
2016 Martinelli DC, Chew KS, Rohlmann A, Lum MY, Ressl S, Hattar S, Brunger AT, Missler M, Südhof TC. Expression of C1ql3 in Discrete Neuronal Populations Controls Efferent Synapse Numbers and Diverse Behaviors. Neuron. 91: 1034-51. PMID 27478018 DOI: 10.1016/J.Neuron.2016.07.002  0.764
2016 Lai Y, Choi UB, Zhang Y, Zhao M, Pfuetzner RA, Wang AL, Diao J, Brunger AT. N-terminal domain of complexin independently activates calcium-triggered fusion. Proceedings of the National Academy of Sciences of the United States of America. PMID 27444020 DOI: 10.1073/Pnas.1604348113  0.708
2016 Malmersjö S, Di Palma S, Diao J, Lai Y, Pfuetzner RA, Wang AL, McMahon MA, Hayer A, Porteus M, Bodenmiller B, Brunger AT, Meyer T. Phosphorylation of residues inside the SNARE complex suppresses secretory vesicle fusion. The Embo Journal. PMID 27402227 DOI: 10.15252/Embj.201694071  0.54
2016 Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Brewster AS, Murray TD, Sauter NK, Berger JM, Weis WI, Brunger AT. IOTA: integration optimization, triage and analysis tool for the processing of XFEL diffraction images. Journal of Applied Crystallography. 49: 1057-1064. PMID 27275148 DOI: 10.1107/S1600576716006683  0.625
2016 Choi UB, Zhao M, Zhang Y, Lai Y, Brunger AT. Complexin induces a conformational change at the membrane-proximal C-terminal end of the SNARE complex. Elife. 5. PMID 27253060 DOI: 10.7554/Elife.16886  0.613
2016 Song CX, Diao J, Brunger AT, Quake SR. Simultaneous single-molecule epigenetic imaging of DNA methylation and hydroxymethylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035984 DOI: 10.1073/Pnas.1600223113  0.426
2016 Baxter EL, Aguila L, Alonso-Mori R, Barnes CO, Bonagura CA, Brehmer W, Brunger AT, Calero G, Caradoc-Davies TT, Chatterjee R, Degrado WF, Fraser JS, Ibrahim M, Kern J, Kobilka BK, et al. High-density grids for efficient data collection from multiple crystals. Acta Crystallographica. Section D, Structural Biology. 72: 2-11. PMID 26894529 DOI: 10.1107/S2059798315020847  0.624
2016 Zhou Q, Brunger AT. Molecular Mechanism of the Synaptotagmin-SNARE Complex that is Essential for Synchronous Synaptic Neurotransmitter Release Biophysical Journal. 110: 318a. DOI: 10.1016/J.Bpj.2015.11.1708  0.731
2015 Zhao M, Brunger AT. Recent advances in deciphering the structure and molecular mechanism of the AAA+ ATPase N-ethylmaleimide Sensitive Factor (NSF). Journal of Molecular Biology. PMID 26546278 DOI: 10.1016/J.Jmb.2015.10.026  0.599
2015 Diao J, Grob P, Cipriano DJ, Kyoung M, Zhang Y, Shah S, Nguyen A, Padolina M, Srivastava A, Vrljic M, Shah A, Nogales E, Chu S, Brunger AT. Correction: Synaptic proteins promote calcium-triggered fast transition from point contact to full fusion. Elife. 4. PMID 26486862 DOI: 10.7554/Elife.12289  0.497
2015 Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, ... Brunger AT, et al. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. Elife. 4. PMID 26422513 DOI: 10.7554/Elife.07574  0.644
2015 Zhou Q, Lai Y, Bacaj T, Zhao M, Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Brewster AS, Sauter NK, Cohen AE, Soltis SM, Alonso-Mori R, Chollet M, Lemke HT, Pfuetzner RA, ... ... Brunger AT, et al. Architecture of the synaptotagmin-SNARE machinery for neuronal exocytosis. Nature. 525: 62-7. PMID 26280336 DOI: 10.1038/Nature14975  0.807
2015 Brunger AT, Cipriano DJ, Diao J. Towards reconstitution of membrane fusion mediated by SNAREs and other synaptic proteins. Critical Reviews in Biochemistry and Molecular Biology. 1-11. PMID 25788028 DOI: 10.3109/10409238.2015.1023252  0.553
2015 Uervirojnangkoorn M, Zeldin OB, Lyubimov AY, Hattne J, Brewster AS, Sauter NK, Brunger AT, Weis WI. Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals. Elife. 4. PMID 25781634 DOI: 10.7554/Elife.05421  0.62
2015 Ressl S, Vu BK, Vivona S, Martinelli DC, Südhof TC, Brunger AT. Structures of C1q-like proteins reveal unique features among the C1q/TNF superfamily. Structure (London, England : 1993). 23: 688-99. PMID 25752542 DOI: 10.1016/J.Str.2015.01.019  0.782
2015 Zhang Y, Diao J, Colbert KN, Lai Y, Pfuetzner RA, Padolina MS, Vivona S, Ressl S, Cipriano DJ, Choi UB, Shah N, Weis WI, Brunger AT. Munc18a does not alter fusion rates mediated by neuronal SNAREs, synaptotagmin, and complexin. The Journal of Biological Chemistry. 290: 10518-34. PMID 25716318 DOI: 10.1074/Jbc.M114.630772  0.804
2015 Diao J, Liu R, Rong Y, Zhao M, Zhang J, Lai Y, Zhou Q, Wilz LM, Li J, Vivona S, Pfuetzner RA, Brunger AT, Zhong Q. ATG14 promotes membrane tethering and fusion of autophagosomes to endolysosomes. Nature. 520: 563-6. PMID 25686604 DOI: 10.1038/Nature14147  0.803
2015 Zeldin OB, Brewster AS, Hattne J, Uervirojnangkoorn M, Lyubimov AY, Zhou Q, Zhao M, Weis WI, Sauter NK, Brunger AT. Data Exploration Toolkit for serial diffraction experiments. Acta Crystallographica. Section D, Biological Crystallography. 71: 352-6. PMID 25664746 DOI: 10.1107/S1399004714025875  0.77
2015 Zhao M, Wu S, Zhou Q, Vivona S, Cipriano DJ, Cheng Y, Brunger AT. Mechanistic insights into the recycling machine of the SNARE complex. Nature. 518: 61-7. PMID 25581794 DOI: 10.1038/Nature14148  0.787
2014 Tsetsenis T, Boucard AA, Araç D, Brunger AT, Südhof TC. Direct visualization of trans-synaptic neurexin-neuroligin interactions during synapse formation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 15083-96. PMID 25378172 DOI: 10.1523/Jneurosci.0348-14.2014  0.741
2014 Cohen AE, Soltis SM, González A, Aguila L, Alonso-Mori R, Barnes CO, Baxter EL, Brehmer W, Brewster AS, Brunger AT, Calero G, Chang JF, Chollet M, Ehrensberger P, Eriksson TL, et al. Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proceedings of the National Academy of Sciences of the United States of America. 111: 17122-7. PMID 25362050 DOI: 10.1073/Pnas.1418733111  0.636
2014 Lai Y, Diao J, Cipriano DJ, Zhang Y, Pfuetzner RA, Padolina MS, Brunger AT. Complexin inhibits spontaneous release and synchronizes Ca2+-triggered synaptic vesicle fusion by distinct mechanisms. Elife. 3: e03756. PMID 25122624 DOI: 10.7554/Elife.03756  0.542
2014 Schröder G, Levitt M, Brunger A. Structure Refinement at Low-resolution: Strategies and Validation Acta Crystallographica Section a Foundations and Advances. 70: C1482-C1482. DOI: 10.1107/S2053273314085179  0.31
2014 Brunger A. New Insights into the Molecular Mechanism of Calcium-Triggered Synaptic Vesicle Fusion Biophysical Journal. 106: 11a. DOI: 10.1016/J.Bpj.2013.11.111  0.385
2013 Terwilliger TC, Read RJ, Adams PD, Brunger AT, Afonine PV, Hung LW. Model morphing and sequence assignment after molecular replacement. Acta Crystallographica. Section D, Biological Crystallography. 69: 2244-50. PMID 24189236 DOI: 10.1107/S0907444913017770  0.453
2013 Diao J, Cipriano DJ, Zhao M, Zhang Y, Shah S, Padolina MS, Pfuetzner RA, Brunger AT. Complexin-1 enhances the on-rate of vesicle docking via simultaneous SNARE and membrane interactions. Journal of the American Chemical Society. 135: 15274-7. PMID 24083833 DOI: 10.1021/Ja407392N  0.707
2013 Pertsinidis A, Mukherjee K, Sharma M, Pang ZP, Park SR, Zhang Y, Brunger AT, Südhof TC, Chu S. Ultrahigh-resolution imaging reveals formation of neuronal SNARE/Munc18 complexes in situ. Proceedings of the National Academy of Sciences of the United States of America. 110: E2812-20. PMID 23821748 DOI: 10.1073/Pnas.1310654110  0.52
2013 Burré J, Vivona S, Diao J, Sharma M, Brunger AT, Südhof TC. Properties of native brain α-synuclein. Nature. 498: E4-6; discussion E6-. PMID 23765500 DOI: 10.1038/Nature12125  0.575
2013 Diao J, Burré J, Vivona S, Cipriano DJ, Sharma M, Kyoung M, Südhof TC, Brunger AT. Native α-synuclein induces clustering of synaptic-vesicle mimics via binding to phospholipids and synaptobrevin-2/VAMP2. Elife. 2: e00592. PMID 23638301 DOI: 10.7554/Elife.00592  0.614
2013 Diao J, Zhao M, Zhang Y, Kyoung M, Brunger AT. Studying protein-reconstituted proteoliposome fusion with content indicators in vitro. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 658-65. PMID 23625805 DOI: 10.1002/Bies.201300010  0.67
2013 Adams PD, Baker D, Brunger AT, Das R, DiMaio F, Read RJ, Richardson DC, Richardson JS, Terwilliger TC. Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems. Annual Review of Biophysics. 42: 265-87. PMID 23451892 DOI: 10.1146/Annurev-Biophys-083012-130253  0.463
2013 Kyoung M, Zhang Y, Diao J, Chu S, Brunger AT. Studying calcium-triggered vesicle fusion in a single vesicle-vesicle content and lipid-mixing system. Nature Protocols. 8: 1-16. PMID 23222454 DOI: 10.1038/Nprot.2012.134  0.546
2013 Kyoung M, Srivastava A, Zhang Y, Diao J, Vrljic M, Grob P, Nogales E, Chu S, Brunger A. Molecular mechanism of calcium-triggered vesicle fusion Toxicon. 68: 66-67. DOI: 10.1016/J.Toxicon.2012.07.035  0.484
2013 Diao J, Brunger AT. A Content Indicator is Critical to Assess Fast Fusion Biophysical Journal. 104: 88a. DOI: 10.1016/J.Bpj.2012.11.526  0.512
2013 Brunger A. Reconstitution of Calcium-Triggered Synaptic Vesicle Fusion Biophysical Journal. 104: 195a. DOI: 10.1016/J.Bpj.2012.11.1102  0.367
2012 Diao J, Grob P, Cipriano DJ, Kyoung M, Zhang Y, Shah S, Nguyen A, Padolina M, Srivastava A, Vrljic M, Shah A, Nogales E, Chu S, Brunger AT. Synaptic proteins promote calcium-triggered fast transition from point contact to full fusion. Elife. 1: e00109. PMID 23240085 DOI: 10.7554/Elife.00109  0.553
2012 Terwilliger TC, Read RJ, Adams PD, Brunger AT, Afonine PV, Grosse-Kunstleve RW, Hung LW. Improved crystallographic models through iterated local density-guided model deformation and reciprocal-space refinement. Acta Crystallographica. Section D, Biological Crystallography. 68: 861-70. PMID 22751672 DOI: 10.1107/S0907444912015636  0.465
2012 Brunger AT, Adams PD, Fromme P, Fromme R, Levitt M, Schröder GF. Improving the accuracy of macromolecular structure refinement at 7 Ã… resolution. Structure (London, England : 1993). 20: 957-66. PMID 22681901 DOI: 10.1016/J.Str.2012.04.020  0.464
2012 Brunger AT, Das D, Deacon AM, Grant J, Terwilliger TC, Read RJ, Adams PD, Levitt M, Schröder GF. Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum. Acta Crystallographica. Section D, Biological Crystallography. 68: 391-403. PMID 22505259 DOI: 10.1107/S090744491104978X  0.449
2012 Araç D, Boucard AA, Bolliger MF, Nguyen J, Soltis SM, Südhof TC, Brunger AT. A novel evolutionarily conserved domain of cell-adhesion GPCRs mediates autoproteolysis. The Embo Journal. 31: 1364-78. PMID 22333914 DOI: 10.1038/emboj.2012.26  0.722
2011 Read RJ, Adams PD, Arendall WB, Brunger AT, Emsley P, Joosten RP, Kleywegt GJ, Krissinel EB, Lütteke T, Otwinowski Z, Perrakis A, Richardson JS, Sheffler WH, Smith JL, Tickle IJ, et al. A new generation of crystallographic validation tools for the protein data bank. Structure (London, England : 1993). 19: 1395-412. PMID 22000512 DOI: 10.1016/J.Str.2011.08.006  0.469
2011 Kyoung M, Srivastava A, Zhang Y, Diao J, Vrljic M, Grob P, Nogales E, Chu S, Brunger AT. In vitro system capable of differentiating fast Ca2+-triggered content mixing from lipid exchange for mechanistic studies of neurotransmitter release. Proceedings of the National Academy of Sciences of the United States of America. 108: E304-13. PMID 21705659 DOI: 10.1073/Pnas.1107900108  0.561
2011 Fenn TD, Schnieders MJ, Mustyakimov M, Wu C, Langan P, Pande VS, Brunger AT. Reintroducing electrostatics into macromolecular crystallographic refinement: application to neutron crystallography and DNA hydration. Structure (London, England : 1993). 19: 523-33. PMID 21481775 DOI: 10.1016/J.Str.2011.01.015  0.414
2010 Fenn TD, Schnieders MJ, Brunger AT, Pande VS. Polarizable atomic multipole x-ray refinement: hydration geometry and application to macromolecules. Biophysical Journal. 98: 2984-92. PMID 20550911 DOI: 10.1016/J.Bpj.2010.02.057  0.436
2010 Zhang C, Atasoy D, Araç D, Yang X, Fucillo MV, Robison AJ, Ko J, Brunger AT, Südhof TC. Neurexins physically and functionally interact with GABA(A) receptors. Neuron. 66: 403-16. PMID 20471353 DOI: 10.1016/J.Neuron.2010.04.008  0.735
2010 Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, ... ... Brunger AT, et al. Climate change and the integrity of science. Science (New York, N.Y.). 328: 689-90. PMID 20448167 DOI: 10.1126/Science.328.5979.689  0.727
2010 Choi UB, Strop P, Vrljic M, Chu S, Brunger AT, Weninger KR. Single-molecule FRET-derived model of the synaptotagmin 1-SNARE fusion complex. Nature Structural & Molecular Biology. 17: 318-24. PMID 20173763 DOI: 10.1038/Nsmb.1763  0.315
2010 Vrljic M, Strop P, Ernst JA, Sutton RB, Chu S, Brunger AT. Molecular mechanism of the synaptotagmin-SNARE interaction in Ca2+-triggered vesicle fusion. Nature Structural & Molecular Biology. 17: 325-31. PMID 20173762 DOI: 10.1038/Nsmb.1764  0.456
2010 Schnieders MJ, Fenn TD, Pande VS, Brunger AT. X-Ray Crystallography Refinement as Ewald Intended: From Drug Design to Ribosome Crystals Biophysical Journal. 98: 177a. DOI: 10.1016/J.Bpj.2009.12.946  0.442
2010 Fenn T, Schnieders M, Pande V, Brunger A. Is Theory Leading Neutron Diffraction in Macromolecular Solvent Networks? Biophysical Journal. 98: 760a. DOI: 10.1016/J.Bpj.2009.12.4172  0.479
2010 Jung J, Fenn TD, Chu S, Brunger AT. Single Molecule Study of Disassembly of SNARE Complex by NSF/α−SNAP Biophysical Journal. 98: 670a. DOI: 10.1016/J.Bpj.2009.12.3680  0.312
2009 Ko J, Zhang C, Arac D, Boucard AA, Brunger AT, Südhof TC. Neuroligin-1 performs neurexin-dependent and neurexin-independent functions in synapse validation. The Embo Journal. 28: 3244-55. PMID 19730411 DOI: 10.1038/emboj.2009.249  0.728
2009 Schnieders MJ, Fenn TD, Pande VS, Brunger AT. Polarizable atomic multipole X-ray refinement: application to peptide crystals. Acta Crystallographica. Section D, Biological Crystallography. 65: 952-65. PMID 19690373 DOI: 10.1107/S0907444909022707  0.424
2009 Brunger AT, Weninger K, Bowen M, Chu S. Single-molecule studies of the neuronal SNARE fusion machinery. Annual Review of Biochemistry. 78: 903-28. PMID 19489736 DOI: 10.1146/Annurev.Biochem.77.070306.103621  0.341
2009 Brunger AT, Rummel A. Receptor and substrate interactions of clostridial neurotoxins. Toxicon : Official Journal of the International Society On Toxinology. 54: 550-60. PMID 19268493 DOI: 10.1016/j.toxicon.2008.12.027  0.302
2009 Brunger AT, DeLaBarre B, Davies JM, Weis WI. X-ray structure determination at low resolution. Acta Crystallographica. Section D, Biological Crystallography. 65: 128-33. PMID 19171967 DOI: 10.1107/S0907444908043795  0.756
2009 Vrljic M, Strop P, Ernst J, Sutton RB, Chu S, Brunger AT. Relative Rearrangements Of Synaptotagmin3 C2A And C2B Domains Are Influenced ay Calcium, Lipids And SNARE Proteins Biophysical Journal. 96: 358a-359a. DOI: 10.1016/J.Bpj.2008.12.1809  0.414
2009 Brunger AT, Jin R, Breidenbach MA. Interactions Between Botulinum Neurotoxins and Synaptic Vesicle Proteins Botulinum Toxin: Therapeutic Clinical Practice and Science. 41-54. DOI: 10.1016/B978-1-4160-4928-9.00004-4  0.786
2008 Davies JM, Brunger AT, Weis WI. Improved structures of full-length p97, an AAA ATPase: implications for mechanisms of nucleotide-dependent conformational change. Structure (London, England : 1993). 16: 715-26. PMID 18462676 DOI: 10.1016/J.Str.2008.02.010  0.768
2008 Brunger AT, Jin R, Breidenbach MA. Highly specific interactions between botulinum neurotoxins and synaptic vesicle proteins. Cellular and Molecular Life Sciences : Cmls. 65: 2296-306. PMID 18425411 DOI: 10.1007/S00018-008-8088-0  0.795
2008 Strop P, Kaiser SE, Vrljic M, Brunger AT. The structure of the yeast plasma membrane SNARE complex reveals destabilizing water-filled cavities. The Journal of Biological Chemistry. 283: 1113-9. PMID 17956869 DOI: 10.1074/Jbc.M707912200  0.636
2007 Araç D, Boucard AA, Ozkan E, Strop P, Newell E, Südhof TC, Brunger AT. Structures of neuroligin-1 and the neuroligin-1/neurexin-1 beta complex reveal specific protein-protein and protein-Ca2+ interactions. Neuron. 56: 992-1003. PMID 18093522 DOI: 10.1016/j.neuron.2007.12.002  0.747
2007 Brunger AT, Breidenbach MA, Jin R, Fischer A, Santos JS, Montal M. Botulinum neurotoxin heavy chain belt as an intramolecular chaperone for the light chain. Plos Pathogens. 3: 1191-4. PMID 17907800 DOI: 10.1371/Journal.Ppat.0030113  0.736
2006 Kasson PM, Kelley NW, Singhal N, Vrljic M, Brunger AT, Pande VS. Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion. Proceedings of the National Academy of Sciences of the United States of America. 103: 11916-21. PMID 16880392 DOI: 10.1073/Pnas.0601597103  0.662
2005 Kasson PM, Davis MM, Brunger AT. Deformable modeling for improved calculation of molecular velocities from single-particle tracking. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 208-11. PMID 16447978 DOI: 10.1109/CSB.2005.28  0.518
2005 Brunger AT. Structure and function of SNARE and SNARE-interacting proteins. Quarterly Reviews of Biophysics. 38: 1-47. PMID 16336742 DOI: 10.1017/S0033583505004051  0.344
2005 Aishima J, Russel DS, Guibas LJ, Adams PD, Brunger AT. Automated crystallographic ligand building using the medial axis transform of an electron-density isosurface. Acta Crystallographica. Section D, Biological Crystallography. 61: 1354-63. PMID 16204887 DOI: 10.1107/S0907444905023152  0.429
2005 Kasson PM, Huppa JB, Davis MM, Brunger AT. A hybrid machine-learning approach for segmentation of protein localization data. Bioinformatics (Oxford, England). 21: 3778-86. PMID 16091410 DOI: 10.1093/Bioinformatics/Bti615  0.551
2005 Breidenbach MA, Brunger AT. New insights into clostridial neurotoxin-SNARE interactions. Trends in Molecular Medicine. 11: 377-81. PMID 16006188 DOI: 10.1016/J.Molmed.2005.06.012  0.79
2005 Kaiser SE, Brickner JH, Reilein AR, Fenn TD, Walter P, Brunger AT. Structural basis of FFAT motif-mediated ER targeting. Structure (London, England : 1993). 13: 1035-45. PMID 16004875 DOI: 10.1016/j.str.2005.04.010  0.632
2005 Breidenbach MA, Brunger AT. 2.3 A crystal structure of tetanus neurotoxin light chain. Biochemistry. 44: 7450-7. PMID 15895988 DOI: 10.1021/Bi050262J  0.774
2005 Kasson PM, Huppa JB, Krogsgaard M, Davis MM, Brunger AT. Quantitative imaging of lymphocyte membrane protein reorganization and signaling. Biophysical Journal. 88: 579-89. PMID 15501943 DOI: 10.1529/Biophysj.104.048827  0.562
2004 Breidenbach MA, Brunger AT. Substrate recognition strategy for botulinum neurotoxin serotype A. Nature. 432: 925-9. PMID 15592454 DOI: 10.1038/Nature03123  0.786
2004 Chaudhry C, Horwich AL, Brunger AT, Adams PD. Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states. Journal of Molecular Biology. 342: 229-45. PMID 15313620 DOI: 10.1016/J.Jmb.2004.07.015  0.729
2004 Kasson PM, Huppa JB, Davis MM, Brunger AT. Quantitative analysis of membrane protein localization and signaling Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 540-541.  0.562
2004 Kasson PM, Huppa JB, Davis MM, Brunger AT. Quantitative analysis of lymphocyte membrane protein redistribution from fluorescence microscopy Proceedings - International Conference On Image Processing, Icip. 2: 2933-2936.  0.563
2003 Weeks CM, Adams PD, Berendzen J, Brunger AT, Dodson EJ, Grosse-Kunstleve RW, Schneider TR, Sheldrick GM, Terwilliger TC, Turkenburg MG, Usón I. Automatic solution of heavy-atom substructures. Methods in Enzymology. 374: 37-83. PMID 14696368 DOI: 10.1016/S0076-6879(03)74003-8  0.444
2003 Chaudhry C, Farr GW, Todd MJ, Rye HS, Brunger AT, Adams PD, Horwich AL, Sigler PB. Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics. The Embo Journal. 22: 4877-87. PMID 14517228 DOI: 10.1093/Emboj/Cdg477  0.74
2003 Furst J, Sutton RB, Chen J, Brunger AT, Grigorieff N. Electron cryomicroscopy structure of N-ethyl maleimide sensitive factor at 11 A resolution. The Embo Journal. 22: 4365-74. PMID 12941689 DOI: 10.1093/Emboj/Cdg420  0.399
2003 Adams PD, Grosse-Kunstleve RW, Brunger AT. Computational aspects of high-throughput crystallographic macromolecular structure determination. Methods of Biochemical Analysis. 44: 75-87. PMID 12647382  0.442
2002 Rouiller I, DeLaBarre B, May AP, Weis WI, Brunger AT, Milligan RA, Wilson-Kubalek EM. Conformational changes of the multifunction p97 AAA ATPase during its ATPase cycle. Nature Structural Biology. 9: 950-7. PMID 12434150 DOI: 10.1038/Nsb872  0.645
2002 Gottschalk KE, Adams PD, Brunger AT, Kessler H. Transmembrane signal transduction of the alpha(IIb)beta(3) integrin. Protein Science : a Publication of the Protein Society. 11: 1800-12. PMID 12070332 DOI: 10.1110/Ps.4120102  0.481
2002 Brunger AT, Adams PD. Molecular dynamics applied to X-ray structure refinement. Accounts of Chemical Research. 35: 404-12. PMID 12069625 DOI: 10.1021/ar010034r  0.444
2001 Brunger AT. Structure of proteins involved in synaptic vesicle fusion in neurons. Annual Review of Biophysics and Biomolecular Structure. 30: 157-71. PMID 11340056 DOI: 10.1146/annurev.biophys.30.1.157  0.33
2001 Brunger AT. Structural insights into the molecular mechanism of calcium-dependent vesicle-membrane fusion. Current Opinion in Structural Biology. 11: 163-73. PMID 11297924 DOI: 10.1016/S0959-440X(00)00186-X  0.327
2000 Rice LM, Earnest TN, Brunger AT. Single-wavelength anomalous diffraction phasing revisited. Acta Crystallographica. Section D, Biological Crystallography. 56: 1413-20. PMID 11053839 DOI: 10.1107/S0907444900010039  0.604
2000 Brunger AT. Structural insights into the molecular mechanism of Ca(2+)-dependent exocytosis. Current Opinion in Neurobiology. 10: 293-302. PMID 10851178 DOI: 10.1016/S0959-4388(00)00098-2  0.333
1999 Sutton RB, Ernst JA, Brunger AT. Crystal structure of the cytosolic C2A-C2B domains of synaptotagmin III. Implications for Ca(+2)-independent snare complex interaction. The Journal of Cell Biology. 147: 589-98. PMID 10545502 DOI: 10.1083/Jcb.147.3.589  0.429
1999 Brunger AT, Adams PD, Rice LM. Annealing in crystallography: a powerful optimization tool. Progress in Biophysics and Molecular Biology. 72: 135-55. PMID 10511798 DOI: 10.1016/S0079-6107(99)00004-8  0.558
1999 Rice LM, Brunger AT. Crystal structure of the vesicular transport protein Sec17: implications for SNAP function in SNARE complex disassembly. Molecular Cell. 4: 85-95. PMID 10445030 DOI: 10.1016/S1097-2765(00)80190-2  0.666
1999 Fiebig KM, Rice LM, Pollock E, Brunger AT. Folding intermediates of SNARE complex assembly. Nature Structural Biology. 6: 117-23. PMID 10048921 DOI: 10.1038/5803  0.654
1999 Kukol A, Adams PD, Rice LM, Brunger AT, Arkin TI. Experimentally based orientational refinement of membrane protein models: A structure for the Influenza A M2 H+ channel. Journal of Molecular Biology. 286: 951-62. PMID 10024461 DOI: 10.1006/Jmbi.1998.2512  0.633
1999 Schlick T, Skeel RD, Brunger AT, Kalé LV, Board JA, Hermans J, Schulten K. Algorithmic Challenges in Computational Molecular Biophysics Journal of Computational Physics. 151: 9-48. DOI: 10.1006/Jcph.1998.6182  0.468
1998 Fasshauer D, Sutton RB, Brunger AT, Jahn R. Conserved structural features of the synaptic fusion complex: SNARE proteins reclassified as Q- and R-SNAREs. Proceedings of the National Academy of Sciences of the United States of America. 95: 15781-6. PMID 9861047 DOI: 10.1073/pnas.95.26.15781  0.467
1998 Sutton RB, Fasshauer D, Jahn R, Brunger AT. Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution. Nature. 395: 347-53. PMID 9759724 DOI: 10.1038/26412  0.479
1998 Rice LM, Shamoo Y, Brünger AT. Phase Improvement by Multi-Start Simulated Annealing Refinement and Structure-Factor Averaging Journal of Applied Crystallography. 31: 798-805. DOI: 10.1107/S0021889898006645  0.624
1998 KARIMI-NEJAD Y, WARREN GL, SCHIPPER D, BRÜNGER AT, BOELENS R. NMR structure calculation methods for large proteins Application of torsion angle dynamics and distance geometry/simulated annealing to the 269-residue protein serine protease PB92 Molecular Physics. 95: 1099-1112. DOI: 10.1080/00268979809483242  0.462
1997 Brünger AT, Rice LM. Crystallographic refinement by simulated annealing: methods and applications. Methods in Enzymology. 277: 243-69. PMID 18488313 DOI: 10.1016/S0076-6879(97)77015-0  0.61
1996 Weis WI, Flaherty KM, Temple Burling F, Brunger AT. Accurate high-resolution phases from MAD analysis: experiment and comparison of phasing methods Acta Crystallographica Section a Foundations of Crystallography. 52: C17-C17. DOI: 10.1107/S0108767396098339  0.595
1996 Brunger AT, Burling FT, Flaherty KM, Weis WI. Refinements of heavy-atom and protein parameters against a highly accurate MAD data set Acta Crystallographica Section a Foundations of Crystallography. 52: C55-C55. DOI: 10.1107/S0108767396096833  0.625
1996 Rice LM, Brünger AT. Crystallographic structure refinement using molecular dynamics constrained to torsion angles Acta Crystallographica Section a Foundations of Crystallography. 52: C84-C84. DOI: 10.1107/S0108767396095724  0.598
1993 Engelman DM, Adair BD, Brunger A, Flanagan JM, Hunt JF, Lemmon MA, Treutlein H, Zhang J. Dimerization of glycophorin A transmembrane helices: Mutagenesis and modeling Journal of General Physiology. 101: 11-21. DOI: 10.1007/978-94-011-2718-9_11  0.321
1991 Simonson T, Perahia D, Bricogne G, Brünger A. Dielectric properties of proteins : microscopic and macroscopic theory Journal De Chimie Physique. 88: 2701-2708. DOI: 10.1051/Jcp/1991882701  0.524
1990 Haydock K, Lim C, Brunger AT, Karplus M. Simulation analysis of structures on the reaction pathway of RNAse A Journal of the American Chemical Society. 112: 3826-3831. DOI: 10.1021/Ja00166A016  0.45
1987 Brünger AT, Kuriyan J, Karplus M. Crystallographic R factor refinement by molecular dynamics. Science (New York, N.Y.). 235: 458-60. PMID 17810339 DOI: 10.1126/Science.235.4787.458  0.624
1987 Brünger AT, Campbell RL, Clore GM, Gronenborn AM, Karplus M, Petsko GA, Teeter MM. Solution of a protein crystal structure with a model obtained from NMR interproton distance restraints. Science (New York, N.Y.). 235: 1049-53. PMID 17782253 DOI: 10.1126/Science.235.4792.1049  0.7
1987 Nilges M, Clore GM, Gronenborn AM, Brunger AT, Karplus M, Nilsson L. Refinement of the solution structure of the DNA hexamer 5'd(GCATGC)2: combined use of nuclear magnetic resonance and restrained molecular dynamics. Biochemistry. 26: 3718-33. PMID 3651407 DOI: 10.1021/bi00386a068  0.492
1986 Clore GM, Nilges M, Sukumaran DK, Brünger AT, Karplus M, Gronenborn AM. The three-dimensional structure of alpha1-purothionin in solution: combined use of nuclear magnetic resonance, distance geometry and restrained molecular dynamics. The Embo Journal. 5: 2729-35. PMID 16453716 DOI: 10.1002/J.1460-2075.1986.Tb04557.X  0.476
1986 Brooks C, Brunger A, Francl M. Role of active site residues and solvation in RNase A Annals of the New York Academy of Sciences. 295-298. DOI: 10.1111/J.1749-6632.1986.Tb48046.X  0.429
1986 Nilsson L, Karplus M, Brünger A, Clore M, Gronenbornt A. Determination of 3D molecular structures from NMR/NOE distance data: application to nucleic acids Journal of Molecular Graphics. 4: 182. DOI: 10.1016/0263-7855(86)80031-5  0.472
1984 Brünger A, Brooks CL, Karplus M. Stochastic boundary conditions for molecular dynamics simulations of ST2 water Chemical Physics Letters. 105: 495-500. DOI: 10.1016/0009-2614(84)80098-6  0.595
1983 Brünger A, Schulten Z, Schulten K. A Network Thermodynamic Investigation of Stationary and Non-Stationary Proton Transport Through Proteins Zeitschrift FüR Physikalische Chemie. 136: 1-63. DOI: 10.1524/Zpch.1983.136.136.001  0.525
1981 Peters R, Brünger A, Schulten K. Continuous fluorescence microphotolysis: A sensitive method for study of diffusion processes in single cells. Proceedings of the National Academy of Sciences of the United States of America. 78: 962-6. PMID 16592981 DOI: 10.1073/Pnas.78.2.962  0.537
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