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Serzhan Sakipov, Ph.D. - Publications

Affiliations: 
2013- Chemistry Carnegie Mellon University, Pittsburgh, PA 
Area:
MD simulations, Quantum Chemical calculations, Ion channels, Protein-small molecule interactions
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Illarionov A, Sakipov S, Pereyaslavets L, Kurnikov IV, Kamath G, Butin O, Voronina E, Ivahnenko I, Leontyev I, Nawrocki G, Darkhovskiy M, Olevanov M, Cherniavskyi YK, Lock C, Greenslade S, et al. Combining Force Fields and Neural Networks for an Accurate Representation of Chemically Diverse Molecular Interactions. Journal of the American Chemical Society. 145: 23620-23629. PMID 37856313 DOI: 10.1021/jacs.3c07628  0.557
2022 Nawrocki G, Leontyev I, Sakipov S, Darkhovskiy M, Kurnikov I, Pereyaslavets L, Kamath G, Voronina E, Butin O, Illarionov A, Olevanov M, Kostikov A, Ivahnenko I, Patel DS, Sankaranarayanan SKRS, et al. Protein-Ligand Binding Free-Energy Calculations with ARROW─A Purely First-Principles Parameterized Polarizable Force Field. Journal of Chemical Theory and Computation. PMID 36459593 DOI: 10.1021/acs.jctc.2c00930  0.592
2022 Pereyaslavets L, Kamath G, Butin O, Illarionov A, Olevanov M, Kurnikov I, Sakipov S, Leontyev I, Voronina E, Gannon T, Nawrocki G, Darkhovskiy M, Ivahnenko I, Kostikov A, Scaranto J, et al. Accurate determination of solvation free energies of neutral organic compounds from first principles. Nature Communications. 13: 414. PMID 35058472 DOI: 10.1038/s41467-022-28041-0  0.553
2020 Kurnikova MG, Sakipov S, Kottke C, Narangoda C, Scaranto J. Dynamical Mechanisms of Glutamate Receptor Gating and Sub-Conductance Biophysical Journal. 118: 581a. DOI: 10.1016/J.Bpj.2019.11.3151  0.567
2019 Narangoda C, Sakipov SN, Kurnikova MG. AMPA Receptor Noncompetitive Inhibitors Occupy a Promiscuous Binding Site. Acs Chemical Neuroscience. PMID 31596070 DOI: 10.1021/Acschemneuro.9B00344  0.608
2019 Sakipov SN, Flores-Canales JC, Kurnikova MG. A Hierarchical Approach to Predict Conformation Dependent Histidine Protonation States in Stable and Flexible Proteins. The Journal of Physical Chemistry. B. PMID 31095377 DOI: 10.1021/Acs.Jpcb.9B00656  0.556
2019 Sakipov S, Narangoda Cm, Mesbahi S, Flores-Canales JC, Kottke C, Kurnikova MG. Agonist and Inhibitor Binding Effects on AMPA Receptor Internal Structure and Dynamics Biophysical Journal. 116: 107a. DOI: 10.1016/J.Bpj.2018.11.611  0.604
2019 Narangoda C, Sakipov S, Kurnikova MG. Computational Characterization of the Binding of Non-Competitive Inhibitors to AMPA Receptors Biophysical Journal. 116: 106a-107a. DOI: 10.1016/J.Bpj.2018.11.609  0.597
2018 Sakipov S, Sobolevsky AI, Kurnikova MG. Ion Permeation Mechanism in Epithelial Calcium Channel TRVP6. Scientific Reports. 8: 5715. PMID 29632318 DOI: 10.1038/S41598-018-23972-5  0.569
2017 Sakipov S, Rafikova O, Kurnikova MG, Rafikov R. Molecular mechanisms of bio-catalysis of heme extraction from hemoglobin. Redox Biology. 11: 516-523. PMID 28088643 DOI: 10.1016/J.Redox.2017.01.004  0.577
2017 Sakipov S, Sobolevsky AI, Kurnikova M. Ion Permeation Mechanism in TRPV6 Ca 2+ Channel Biophysical Journal. 112: 466a. DOI: 10.1016/J.Bpj.2016.11.2498  0.553
2015 Sakipov S, Kurnikova M, Rafikov R. Bio-Catalysis of Heme Extraction from Extracellular Hemoglobin for Sickle Cell Disease and Hemolysis Treatment Free Radical Biology and Medicine. 87: S56. DOI: 10.1016/J.Freeradbiomed.2015.10.146  0.518
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