Christopher W. Benner, Ph.D.
Affiliations: | 2009 | Bioinformatics | University of California, San Diego, La Jolla, CA |
Area:
Bioinformatics BiologyGoogle:
"Christopher Benner"Parents
Sign in to add mentor| Shankar Subramaniam | grad student | 2009 | UCSD | |
| (Identification of a conserved periodic promoter structure in metazoans.) | ||||
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Publications
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| Lam MTY, Duttke SH, Odish MF, et al. (2023) Dynamic activity in cis-regulatory elements of leukocytes identifies transcription factor activation and stratifies COVID-19 severity in ICU patients. Cell Reports. Medicine. 100935 |
| Yuan B, Zhou X, Suzuki K, et al. (2022) Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing. Nature Communications. 13: 3646 |
| Duttke SH, Beyhan S, Singh R, et al. (2022) Decoding Transcription Regulatory Mechanisms Associated with Phase Transition Using Total RNA. Msystems. e0140421 |
| Shamie I, Duttke SH, Karottki KJC, et al. (2021) A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells. Nar Genomics and Bioinformatics. 3: lqab061 |
| Santos NPD, Texari L, Benner C. (2020) MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariates. Bmc Bioinformatics. 21: 410 |
| Tran V, Ledwith MP, Thamamongood T, et al. (2020) Influenza virus repurposes the antiviral protein IFIT2 to promote translation of viral mRNAs. Nature Microbiology |
| Shen Z, Hoeksema MA, Ouyang Z, et al. (2020) MAGGIE: leveraging genetic variation to identify DNA sequence motifs mediating transcription factor binding and function. Bioinformatics (Oxford, England). 36: i84-i92 |
| Ho JSY, Angel M, Ma Y, et al. (2020) Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection. Cell |
| Thamamongood T, Aebischer A, Wagner V, et al. (2020) A genome-wide CRISPR-Cas9 screen reveals the requirement of host cell sulfation for Schmallenberg virus infection. Journal of Virology |
| Roth SJ, Heinz S, Benner C. (2020) ARTDeco: automatic readthrough transcription detection. Bmc Bioinformatics. 21: 214 |