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Monica C. Munoz-Torres, Ph.D. - Publications

Affiliations: 
Genetics and Biochemistry Clemson University, Clemson, SC, United States 
Area:
Evolutionary genetics
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Danis D, Jacobsen JOB, Wagner AH, Groza T, Beckwith MA, Rekerle L, Carmody LC, Reese J, Hegde H, Ladewig MS, Seitz B, Munoz-Torres M, Harris NL, Rambla J, Baudis M, et al. Phenopacket-tools: Building and validating GA4GH Phenopackets. Plos One. 18: e0285433. PMID 37196000 DOI: 10.1371/journal.pone.0285433  0.307
2021 Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, ... ... Munoz-Torres MC, et al. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. 1. PMID 35072136 DOI: 10.1016/j.xgen.2021.100029  0.447
2020 Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, ... ... Munoz-Torres M, et al. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biology and Evolution. PMID 32442304 DOI: 10.1093/Gbe/Evaa106  0.527
2020 Sparks ME, Bansal R, Benoit JB, Blackburn MB, Chao H, Chen M, Cheng S, Childers C, Dinh H, Doddapaneni HV, Dugan S, Elpidina EN, Farrow DW, Friedrich M, Gibbs RA, ... ... Munoz-Torres M, et al. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. Bmc Genomics. 21: 227. PMID 32171258 DOI: 10.1186/S12864-020-6510-7  0.443
2020 Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, ... ... Munoz-Torres M, et al. Gene content evolution in the arthropods. Genome Biology. 21: 15. PMID 31969194 DOI: 10.1186/S13059-019-1925-7  0.542
2019 Hosmani PS, Shippy T, Miller S, Benoit JB, Munoz-Torres M, Flores-Gonzalez M, Mueller LA, Wiersma-Koch H, D'Elia T, Brown SJ, Saha S. A quick guide for student-driven community genome annotation. Plos Computational Biology. 15: e1006682. PMID 30943207 DOI: 10.1371/Journal.Pcbi.1006682  0.52
2019 Panfilio KA, Vargas Jentzsch IM, Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM, Ioannidis P, Weirauch MT, Hughes DST, Murali SC, Werren JH, Jacobs CGC, ... ... Munoz-Torres MC, et al. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biology. 20: 64. PMID 30935422 DOI: 10.1186/S13059-019-1660-0  0.5
2019 Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, ... ... Munoz-Torres M, et al. Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. Database : the Journal of Biological Databases and Curation. 2019. PMID 30820572 DOI: 10.1093/database/baz035  0.391
2019 Dunn NA, Unni DR, Diesh C, Munoz-Torres M, Harris NL, Yao E, Rasche H, Holmes IH, Elsik CG, Lewis SE. Apollo: Democratizing genome annotation. Plos Computational Biology. 15: e1006790. PMID 30726205 DOI: 10.1371/Journal.Pcbi.1006790  0.463
2018 Armisén D, Rajakumar R, Friedrich M, Benoit JB, Robertson HM, Panfilio KA, Ahn SJ, Poelchau MF, Chao H, Dinh H, Doddapaneni HV, Dugan S, Gibbs RA, Hughes DST, Han Y, ... ... Munoz-Torres M, et al. The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water. Bmc Genomics. 19: 832. PMID 30463532 DOI: 10.1186/S12864-018-5163-2  0.39
2018 Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, ... ... Munoz-Torres MC, et al. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database : the Journal of Biological Databases and Curation. 2018. PMID 30239679 DOI: 10.1093/Database/Bay088  0.378
2018 Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, ... ... Munoz-Torres MC, et al. The Toxicogenome of Hyalella azteca: a model for sediment ecotoxicology and evolutionary toxicology. Environmental Science & Technology. PMID 29634279 DOI: 10.1021/Acs.Est.8B00837  0.489
2018 Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, ... ... Munoz-Torres M, et al. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific Reports. 8: 1931. PMID 29386578 DOI: 10.1038/S41598-018-20154-1  0.539
2017 Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, ... ... Munoz-Torres M, et al. Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. Database : the Journal of Biological Databases and Curation. 2017. PMID 29220441 DOI: 10.1093/Database/Bax032  0.476
2017 Harris NL, Cock PJA, Chapman B, Fields CJ, Hokamp K, Lapp H, Munoz-Torres M, Tzovaras BG, Wiencko H. The 2017 Bioinformatics Open Source Conference (BOSC). F1000research. 6. PMID 29118973 DOI: 10.12688/F1000Research.12929.1  0.331
2017 Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Munoz-Torres MC, et al. Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 16153. PMID 28832025 DOI: 10.1038/Ncomms16153  0.467
2017 Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Munoz-Torres MC, et al. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 15451. PMID 28508897 DOI: 10.1038/Ncomms15451  0.41
2017 Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM. WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database : the Journal of Biological Databases and Curation. 2017. PMID 28365742 DOI: 10.1093/database/bax025  0.561
2017 Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, ... ... Munoz-Torres M, et al. Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biology. 18: 11. PMID 28100280 DOI: 10.1186/S13059-017-1155-9  0.523
2017 Munoz-Torres M, Carbon S. Get GO! Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools. Methods of Molecular Biology. 1446: 149-160. PMID 27812941 DOI: 10.1007/978-1-4939-3743-1_11  0.357
2017 Dunn NA, Munoz-Torres MC, Unni D, Rasche E, Bretaudeau A, Yao E, Holmes I, Elsik CG, Lewis SE. Apollo: collaborative and scalable manual genome annotation F1000research. 6. DOI: 10.7490/F1000Research.1114357.1  0.543
2017 Carbon S, Elser J, Cooper L, Dunn N, Douglass E, Lewis S, Munoz-Torres M, Jaiswal P, Mungall C. Planteome: ontology-based services for querying and mining plant genomic and phenomic data F1000research. 6. DOI: 10.7490/F1000Research.1114341.1  0.392
2016 Harris NL, Cock PJ, Chapman B, Fields CJ, Hokamp K, Lapp H, Muñoz-Torres M, Wiencko H. The 2016 Bioinformatics Open Source Conference (BOSC). F1000research. 5. PMID 27781083 DOI: 10.12688/F1000Research.9663.1  0.321
2016 Engel P, Kwong WK, McFrederick Q, Anderson KE, Barribeau SM, Chandler JA, Cornman RS, Dainat J, de Miranda JR, Doublet V, Emery O, Evans JD, Farinelli L, Flenniken ML, Granberg F, ... ... Munoz-Torres M, et al. The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions. Mbio. 7. PMID 27118586 DOI: 10.1128/Mbio.02164-15  0.368
2016 Buels R, Yao E, Diesh CM, Hayes RD, Munoz-Torres M, Helt G, Goodstein DM, Elsik CG, Lewis SE, Stein L, Holmes IH. JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biology. 17: 66. PMID 27072794 DOI: 10.1186/S13059-016-0924-1  0.471
2016 Harris NL, Cock PJ, Lapp H, Chapman B, Davey R, Fields C, Hokamp K, Munoz-Torres M. The 2015 Bioinformatics Open Source Conference (BOSC 2015). Plos Computational Biology. 12: e1004691. PMID 26914653 DOI: 10.1371/Journal.Pcbi.1004691  0.342
2016 Dunn N, Munoz-Torres M, Diesh C, Unni D, Rasche E, Yao E, Holmes I, Elsik C, Lewis S. Apollo: collaborative manual annotation for genomic sequencing projects F1000research. 5. DOI: 10.7490/F1000Research.1112335.1  0.491
2015 Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, ... ... Munoz-Torres M, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology. 16: 76. PMID 25908251 DOI: 10.1186/S13059-015-0623-3  0.46
2014 Terrapon N, Li C, Robertson HM, Ji L, Meng X, Booth W, Chen Z, Childers CP, Glastad KM, Gokhale K, Gowin J, Gronenberg W, Hermansen RA, Hu H, Hunt BG, ... ... Munoz-Torres MC, et al. Molecular traces of alternative social organization in a termite genome. Nature Communications. 5: 3636. PMID 24845553 DOI: 10.1038/Ncomms4636  0.425
2014 Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R, ... ... Munoz-Torres MC, et al. Finding the missing honey bee genes: lessons learned from a genome upgrade. Bmc Genomics. 15: 86. PMID 24479613 DOI: 10.1186/1471-2164-15-86  0.57
2013 Lee E, Helt GA, Reese JT, Munoz-Torres MC, Childers CP, Buels RM, Stein L, Holmes IH, Elsik CG, Lewis SE. Web Apollo: a web-based genomic annotation editing platform. Genome Biology. 14: R93. PMID 24000942 DOI: 10.1186/Gb-2013-14-8-R93  0.539
2013 Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S, Lawson D, Elsik C, Coddington J, Edwards O, Emrich S, Gabaldon T, Goldsmith M, Hanes G, Misof B, Muñoz-Torres M, et al. The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment Journal of Heredity. 104: 595-600. PMID 23940263 DOI: 10.1093/Jhered/Est050  0.514
2011 Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, ... ... Munoz-Torres MC, et al. Draft genome of the red harvester ant Pogonomyrmex barbatus. Proceedings of the National Academy of Sciences of the United States of America. 108: 5667-72. PMID 21282651 DOI: 10.1073/Pnas.1007901108  0.538
2011 Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, et al. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proceedings of the National Academy of Sciences of the United States of America. 108: 5673-8. PMID 21282631 DOI: 10.1073/Pnas.1008617108  0.563
2011 Munoz-Torres MC, Reese JT, Childers CP, Bennett AK, Sundaram JP, Childs KL, Anzola JM, Milshina N, Elsik CG. Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera. Nucleic Acids Research. 39: D658-62. PMID 21071397 DOI: 10.1093/Nar/Gkq1145  0.582
2010 Muñoz-Torres MC, Saski C, Blackmon B, Romero-Severson J, Werren JH. Development of bacterial artificial chromosome library resources for parasitoid Hymenoptera (Nasonia vitripennis and Nasonia giraulti: Pteromalidae). Insect Molecular Biology. 19: 181-7. PMID 20167027 DOI: 10.1111/J.1365-2583.2009.00962.X  0.543
2010 Loehlin DW, Oliveira DC, Edwards R, Giebel JD, Clark ME, Cattani MV, van de Zande L, Verhulst EC, Beukeboom LW, Muñoz-Torres M, Werren JH. Non-coding changes cause sex-specific wing size differences between closely related species of Nasonia. Plos Genetics. 6: e1000821. PMID 20090834 DOI: 10.1371/Journal.Pgen.1000821  0.311
2010 Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, ... ... Munoz-Torres MC, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/Science.1178028  0.511
2009 Bonet J, Girona EL, Sargent DJ, Muñoz-Torres MC, Monfort A, Abbott AG, Arús P, Simpson DW, Davik J. The development and characterisation of a bacterial artificial chromosome library for Fragaria vesca. Bmc Research Notes. 2: 188. PMID 19772672 DOI: 10.1186/1756-0500-2-188  0.364
2008 Schlueter JA, Goicoechea JL, Collura K, Gill N, Lin J, Yu Y, Kudrna D, Zuccolo A, Vallejos CE, Muñoz-Torres M, Blair MW, Tohme J, Tomkins J, McClean P, Wing RA, et al. BAC-end Sequence Analysis and a Draft Physical Map of the Common Bean (Phaseolus vulgaris L.) Genome Tropical Plant Biology. 1: 40-48. DOI: 10.1007/S12042-007-9003-9  0.496
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