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Adam R. Urbach, Ph.D. - Publications

Affiliations: 
2004- Chemistry Trinity University, USA 
Area:
Molecular Recognition
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Suating P, Kimberly LB, Ewe MB, Chang SL, Fontenot JM, Sultane PR, Bielawski CW, Decato DA, Berryman OB, Taylor AB, Urbach AR. Cucurbit[8]uril Binds Nonterminal Dipeptide Sites with High Affinity and Induces a Type II β-Turn. Journal of the American Chemical Society. PMID 38348472 DOI: 10.1021/jacs.3c14045  0.363
2022 Anderson HR, Reeves WL, Bockus AT, Suating P, Grice AG, Gallagher M, Urbach AR. Semisynthesis of Aminomethyl-Insulin: An Atom-Economic Strategy to Increase the Affinity and Selectivity of a Protein for Recognition by a Synthetic Receptor. Bioconjugate Chemistry. PMID 36534758 DOI: 10.1021/acs.bioconjchem.2c00501  0.742
2018 Hirani Z, Taylor HF, Babcock EF, Bockus AT, Varnado CD, Bielawski CW, Urbach AR. Molecular Recognition of Methionine-Terminated Peptides by Cucurbit[8]uril. Journal of the American Chemical Society. PMID 30221936 DOI: 10.1021/Jacs.8B07865  0.794
2016 Bockus AT, Smith LC, Grice AG, Ali OA, Young CC, Mobley W, Leek A, Roberts JL, Vinciguerra B, Isaacs L, Urbach AR. Cucurbit[7]uril-Tetramethylrhodamine Conjugate for Direct Sensing and Cellular Imaging. Journal of the American Chemical Society. 138: 16549-16552. PMID 27998093 DOI: 10.1021/Jacs.6B11140  0.773
2016 Li W, Bockus AT, Vinciguerra B, Isaacs L, Urbach AR. Predictive recognition of native proteins by cucurbit[7]uril in a complex mixture. Chemical Communications (Cambridge, England). PMID 27311878 DOI: 10.1039/C6Cc03193E  0.763
2015 Lee JW, Shin MH, Mobley W, Urbach AR, Kim HI. Supramolecular Enhancement of Protein Analysis via the Recognition of Phenylalanine with Cucurbit[7]uril. Journal of the American Chemical Society. PMID 26565603 DOI: 10.1021/Jacs.5B10648  0.381
2015 Smith LC, Leach DG, Blaylock BE, Ali OA, Urbach AR. Sequence-specific, nanomolar peptide binding via cucurbit[8]uril-induced folding and inclusion of neighboring side chains. Journal of the American Chemical Society. 137: 3663-9. PMID 25710854 DOI: 10.1021/Jacs.5B00718  0.481
2013 Logsdon LA, Urbach AR. Sequence-specific inhibition of a nonspecific protease. Journal of the American Chemical Society. 135: 11414-6. PMID 23883194 DOI: 10.1021/Ja406032X  0.438
2013 Ali OA, Olson EM, Urbach AR. Effects of sequence context on the binding of tryptophan-containing peptides by the cucurbit[8]uril-methyl viologen complex Supramolecular Chemistry. 25: 863-868. DOI: 10.1080/10610278.2013.810338  0.457
2012 Ramalingam V, Kwee SK, Ryno LM, Urbach AR. A cucurbit[8]uril sponge. Organic & Biomolecular Chemistry. 10: 8587-9. PMID 23042328 DOI: 10.1039/C2Ob26774H  0.76
2012 Muddana HS, Varnado CD, Bielawski CW, Urbach AR, Isaacs L, Geballe MT, Gilson MK. Blind prediction of host-guest binding affinities: a new SAMPL3 challenge. Journal of Computer-Aided Molecular Design. 26: 475-87. PMID 22366955 DOI: 10.1007/S10822-012-9554-1  0.585
2011 Logsdon LA, Schardon CL, Ramalingam V, Kwee SK, Urbach AR. Nanomolar binding of peptides containing noncanonical amino acids by a synthetic receptor. Journal of the American Chemical Society. 133: 17087-92. PMID 21967539 DOI: 10.1021/Ja207825Y  0.803
2011 Ramalingam V, Urbach AR. Cucurbit[8]uril rotaxanes. Organic Letters. 13: 4898-901. PMID 21846094 DOI: 10.1021/Ol201991E  0.793
2011 Ghale G, Ramalingam V, Urbach AR, Nau WM. Determining protease substrate selectivity and inhibition by label-free supramolecular tandem enzyme assays. Journal of the American Chemical Society. 133: 7528-35. PMID 21513303 DOI: 10.1021/Ja2013467  0.782
2011 Chinai JM, Taylor AB, Ryno LM, Hargreaves ND, Morris CA, Hart PJ, Urbach AR. Molecular recognition of insulin by a synthetic receptor. Journal of the American Chemical Society. 133: 8810-3. PMID 21473587 DOI: 10.1021/Ja201581X  0.49
2011 Urbach AR, Ramalingam V. Molecular recognition of amino acids, peptides, and proteins by cucurbit[n]uril receptors Israel Journal of Chemistry. 51: 664-678. DOI: 10.1002/Ijch.201100035  0.797
2010 Biedermann F, Rauwald U, Cziferszky M, Williams KA, Gann LD, Guo BY, Urbach AR, Bielawski CW, Scherman OA. Benzobis(imidazolium)-cucurbit[8]uril complexes for binding and sensing aromatic compounds in aqueous solution. Chemistry (Weinheim An Der Bergstrasse, Germany). 16: 13716-22. PMID 21058380 DOI: 10.1002/Chem.201002274  0.431
2010 Reczek JJ, Rebolini E, Urbach AR. Solid-phase synthesis of peptide-viologen conjugates Journal of Organic Chemistry. 75: 2111-2114. PMID 20180557 DOI: 10.1021/Jo100018F  0.732
2009 Reczek JJ, Kennedy AA, Halbert BT, Urbach AR. Multivalent recognition of peptides by modular self-assembled receptors. Journal of the American Chemical Society. 131: 2408-15. PMID 19199617 DOI: 10.1021/Ja808936Y  0.767
2008 Krishnamurthy VM, Kaufman GK, Urbach AR, Gitlin I, Gudiksen KL, Weibel DB, Whitesides GM. Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding. Chemical Reviews. 108: 946-1051. PMID 18335973 DOI: 10.1021/Cr050262P  0.682
2008 Vincil GA, Urbach AR. Effects of the number and placement of positive charges on viologen-cucurbit[n]uril interactions Supramolecular Chemistry. 20: 681-687. DOI: 10.1080/10610270701689572  0.364
2008 Rajgariah P, Urbach AR. Scope of amino acid recognition by cucurbit[8]uril Journal of Inclusion Phenomena and Macrocyclic Chemistry. 62: 251-254. DOI: 10.1007/S10847-008-9464-Y  0.434
2007 Dervan PB, Urbach AR. The Importance of β-Alanine for Recognition of the Minor Groove of DNA Essays in Contemporary Chemistry: From Molecular Structure Towards Biology. 327-339. DOI: 10.1002/9783906390451.ch9  0.38
2006 Heitmann LM, Taylor AB, Hart PJ, Urbach AR. Sequence-specific recognition and cooperative dimerization of N-terminal aromatic peptides in aqueous solution by a synthetic host. Journal of the American Chemical Society. 128: 12574-81. PMID 16984208 DOI: 10.1021/Ja064323S  0.451
2005 Bush ME, Bouley ND, Urbach AR. Charge-mediated recognition of N-terminal tryptophan in aqueous solution by a synthetic host. Journal of the American Chemical Society. 127: 14511-7. PMID 16218648 DOI: 10.1021/Ja0548440  0.48
2005 Gudiksen KL, Gitlin I, Yang J, Urbach AR, Moustakas DT, Whitesides GM. Eliminating positively charged lysine epsilon-NH3+ groups on the surface of carbonic anhydrase has no significant influence on its folding from sodium dodecyl sulfate. Journal of the American Chemical Society. 127: 4707-14. PMID 15796537 DOI: 10.1021/Ja043804D  0.744
2004 Gudiksen KL, Urbach AR, Gitlin I, Yang J, Vazquez JA, Costello CE, Whitesides GM. Influence of the Zn(II) cofactor on the refolding of bovine carbonic anhydrase after denaturation with sodium dodecyl sulfate. Analytical Chemistry. 76: 7151-61. PMID 15595855 DOI: 10.1021/Ac0488560  0.751
2003 Urbach AR, Love JC, Prentiss MG, Whitesides GM. Sub-100 nm confinement of magnetic nanoparticles using localized magnetic field gradients. Journal of the American Chemical Society. 125: 12704-5. PMID 14558807 DOI: 10.1021/ja0378308  0.497
2003 Love JC, Urbach AR, Prentiss MG, Whitesides GM. Three-dimensional self-assembly of metallic rods with submicron diameters using magnetic interactions. Journal of the American Chemical Society. 125: 12696-7. PMID 14558803 DOI: 10.1021/Ja037642H  0.554
2002 Urbach AR, Love JJ, Ross SA, Dervan PB. Structure of a beta-alanine-linked polyamide bound to a full helical turn of purine tract DNA in the 1:1 motif. Journal of Molecular Biology. 320: 55-71. PMID 12079334 DOI: 10.1016/S0022-2836(02)00430-8  0.534
2002 Marques MA, Doss RM, Urbach AR, Dervan PB. Toward an understanding of the chemical etiology for DNA minor-groove recognition by polyamides Helvetica Chimica Acta. 85: 4485-4517. DOI: 10.1002/Hlca.200290024  0.738
2001 Urbach AR, Dervan PB. Toward rules for 1:1 polyamide:DNA recognition. Proceedings of the National Academy of Sciences of the United States of America. 98: 4343-8. PMID 11296283 DOI: 10.1073/Pnas.081070798  0.464
1999 Urbach AR, Szewczyk JW, White S, Turner JM, Baird EE, Dervan PB. Sequence selectivity of 3-hydroxypyrrole/pyrrole ring pairings in the DNA minor groove Journal of the American Chemical Society. 121: 11621-11629. DOI: 10.1021/Ja9930667  0.566
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