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Taek S. Lee, Ph.D. - Publications

Affiliations: 
2006 Stanford University, Palo Alto, CA 
Area:
Bioorganic and Biophysical Chemistry
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Liu D, Hwang HJ, Otoupal PB, Geiselman GM, Kim J, Pomraning KR, Kim YM, Munoz N, Nicora CD, Gao Y, Burnum-Johnson KE, Jacobson O, Coradetti S, Kim J, Deng S, ... ... Lee TS, et al. Engineering Rhodosporidium toruloides for production of 3-Hydroxypropionic acid from lignocellulosic Hydrolysate. Metabolic Engineering. PMID 37201565 DOI: 10.1016/j.ymben.2023.05.001  0.327
2021 Kim J, Baidoo EEK, Amer B, Mukhopadhyay A, Adams PD, Simmons BA, Lee TS. Engineering Saccharomyces cerevisiae for isoprenol production. Metabolic Engineering. PMID 33581331 DOI: 10.1016/j.ymben.2021.02.002  0.305
2020 Eiben CB, Tian T, Thompson MG, Mendez-Perez D, Kaplan N, Goyal G, Chiniquy J, Hillson NJ, Lee TS, Keasling JD. Adenosine Triphosphate and Carbon Efficient Route to Second Generation Biofuel Isopentanol. Acs Synthetic Biology. PMID 32149502 DOI: 10.1021/Acssynbio.9B00402  0.36
2019 Kang A, Mendez-Perez D, Goh EB, Baidoo EEK, Benites VT, Beller HR, Keasling JD, Adams PD, Mukhopadhyay A, Lee TS. Optimization of the IPP-bypass mevalonate pathway and fed-batch fermentation for the production of isoprenol in Escherichia coli. Metabolic Engineering. PMID 31499175 DOI: 10.1016/J.Ymben.2019.09.003  0.345
2019 Wang S, Cheng G, Dong J, Tian T, Lee TS, Mukhopadhyay A, Simmons BA, Yuan Q, Singer SW. NaCl enhances Escherichia coli growth and isoprenol production in the presence of imidazolium-based ionic liquids Bioresource Technology Reports. 6: 1-5. DOI: 10.1016/J.Biteb.2019.01.021  0.313
2018 Goyal G, Costello Z, Guitierrez JA, Kang A, Lee TS, Garcia Martin H, Hillson NJ. Parallel Integration and Chromosomal Expansion of Metabolic Pathways. Acs Synthetic Biology. PMID 30351913 DOI: 10.1021/Acssynbio.8B00243  0.341
2018 George KW, Thompson M, Kim J, Baidoo EEK, Wang G, Benites VT, Petzold CJ, Chan LJG, Yilmaz S, Turhanen P, Adams PD, Keasling JD, Lee TS. Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli. Metabolic Engineering. PMID 29530749 DOI: 10.1016/J.Ymben.2018.03.004  0.396
2017 Alonso-Gutierrez J, Koma D, Hu Q, Yang Y, Chan LJG, Petzold CJ, Adams PD, Vickers CE, Nielsen LK, Keasling JD, Lee TS. Towards industrial production of isoprenoids in Escherichia coli: lessons learned from CRISPR-Cas9 based optimization of a chromosomally integrated mevalonate pathway. Biotechnology and Bioengineering. PMID 29278415 DOI: 10.1002/Bit.26530  0.37
2016 Choi SY, Lee HJ, Choi J, Kim J, Sim SJ, Um Y, Kim Y, Lee TS, Keasling JD, Woo HM. Photosynthetic conversion of CO2 to farnesyl diphosphate-derived phytochemicals (amorpha-4,11-diene and squalene) by engineered cyanobacteria. Biotechnology For Biofuels. 9: 202. PMID 27688805 DOI: 10.1186/S13068-016-0617-8  0.372
2016 Eudes A, Zhao N, Sathitsuksanoh N, Baidoo EE, Lao J, Wang G, Yogiswara S, Lee TS, Singh S, Mortimer JC, Keasling JD, Simmons BA, Loqué D. Expression of S-adenosylmethionine Hydrolase in Tissues Synthesizing Secondary Cell Walls Alters Specific Methylated Cell Wall Fractions and Improves Biomass Digestibility. Frontiers in Bioengineering and Biotechnology. 4: 58. PMID 27486577 DOI: 10.3389/Fbioe.2016.00058  0.335
2016 Brunk E, George KW, Alonso-Gutierrez J, Thompson M, Baidoo E, Wang G, Petzold CJ, McCloskey D, Monk J, Yang L, O'Brien EJ, Batth TS, Martin HG, Feist A, Adams PD, ... ... Lee TS, et al. Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow. Cell Systems. PMID 27211860 DOI: 10.1016/J.Cels.2016.04.004  0.406
2016 Wu W, Tran W, Taatjes CA, Alonso-Gutierrez J, Lee TS, Gladden JM. Rapid Discovery and Functional Characterization of Terpene Synthases from Four Endophytic Xylariaceae. Plos One. 11: e0146983. PMID 26885833 DOI: 10.1371/Journal.Pone.0146983  0.355
2016 Eudes A, Pereira JH, Yogiswara S, Wang G, Teixeira Benites V, Baidoo EE, Lee TS, Adams PD, Keasling JD, Loqué D. Exploiting The Substrate Promiscuity of Hydroxycinnamoyl-CoA:shikimate Hydroxycinnamoyl Transferase to Reduce Lignin. Plant & Cell Physiology. PMID 26858288 DOI: 10.1093/Pcp/Pcw016  0.369
2016 Liszka MJ, Kang A, Konda NVSNM, Tran K, Gladden JM, Singh S, Keasling JD, Scown CD, Lee TS, Simmons BA, Sale KL. Switchable ionic liquids based on di-carboxylic acids for one-pot conversion of biomass to an advanced biofuel Green Chemistry. 18: 4012-4021. DOI: 10.1039/C6Gc00657D  0.313
2016 Kang A, Lee TS. Secondary Metabolism for Isoprenoid-based Biofuels Biotechnology For Biofuel Production and Optimization. 35-71. DOI: 10.1016/B978-0-444-63475-7.00002-9  0.314
2015 Kang A, Lee TS. Converting Sugars to Biofuels: Ethanol and Beyond. Bioengineering (Basel, Switzerland). 2: 184-203. PMID 28952477 DOI: 10.3390/Bioengineering2040184  0.419
2015 Kang A, George KW, Wang G, Baidoo E, Keasling JD, Lee TS. Isopentenyl diphosphate (IPP)-bypass mevalonate pathways for isopentenol production. Metabolic Engineering. PMID 26708516 DOI: 10.1016/J.Ymben.2015.12.002  0.372
2015 Eudes A, Teixeira Benites V, Wang G, Baidoo EE, Lee TS, Keasling JD, Loqué D. Precursor-Directed Combinatorial Biosynthesis of Cinnamoyl, Dihydrocinnamoyl, and Benzoyl Anthranilates in Saccharomyces cerevisiae. Plos One. 10: e0138972. PMID 26430899 DOI: 10.1371/Journal.Pone.0138972  0.405
2015 Beller HR, Lee TS, Katz L. Natural products as biofuels and bio-based chemicals: fatty acids and isoprenoids. Natural Product Reports. PMID 26216573 DOI: 10.1039/C5Np00068H  0.341
2015 George KW, Thompson MG, Kang A, Baidoo E, Wang G, Chan LJ, Adams PD, Petzold CJ, Keasling JD, Lee TS. Metabolic engineering for the high-yield production of isoprenoid-based C₅ alcohols in E. coli. Scientific Reports. 5: 11128. PMID 26052683 DOI: 10.1038/Srep11128  0.364
2015 Chubukov V, Mingardon F, Schackwitz W, Baidoo EE, Alonso-Gutierrez J, Hu Q, Lee TS, Keasling JD, Mukhopadhyay A. Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC. Applied and Environmental Microbiology. 81: 4690-6. PMID 25934627 DOI: 10.1128/Aem.01102-15  0.366
2015 Lee TS, Quek SY, Goh SJ, Phillips R, Guan C, Cheung YB, Feng L, Wang CC, Chin ZY, Zhang H, Lee J, Ng TP, Krishnan KR. A pilot randomized controlled trial using EEG-based brain-computer interface training for a Chinese-speaking group of healthy elderly. Clinical Interventions in Aging. 10: 217-27. PMID 25624754 DOI: 10.2147/CIA.S73955  0.302
2015 George KW, Alonso-Gutierrez J, Keasling JD, Lee TS. Isoprenoid drugs, biofuels, and chemicals-artemisinin, farnesene, and beyond. Advances in Biochemical Engineering/Biotechnology. 148: 355-89. PMID 25577395 DOI: 10.1007/10_2014_288  0.418
2015 Alonso-Gutierrez J, Kim EM, Batth TS, Cho N, Hu Q, Chan LJ, Petzold CJ, Hillson NJ, Adams PD, Keasling JD, Garcia Martin H, Lee TS. Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering. Metabolic Engineering. 28: 123-33. PMID 25554074 DOI: 10.1016/J.Ymben.2014.11.011  0.404
2015 Shi J, George KW, Sun N, He W, Li C, Stavila V, Keasling JD, Simmons BA, Lee TS, Singh S. Impact of Pretreatment Technologies on Saccharification and Isopentenol Fermentation of Mixed Lignocellulosic Feedstocks Bioenergy Research. DOI: 10.1007/S12155-015-9588-Z  0.363
2014 Foo JL, Jensen HM, Dahl RH, George K, Keasling JD, Lee TS, Leong S, Mukhopadhyay A. Improving microbial biogasoline production in Escherichia coli using tolerance engineering. Mbio. 5: e01932. PMID 25370492 DOI: 10.1128/Mbio.01932-14  0.416
2014 Goh EB, Baidoo EE, Burd H, Lee TS, Keasling JD, Beller HR. Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies. Metabolic Engineering. 26: 67-76. PMID 25241399 DOI: 10.1016/J.Ymben.2014.09.003  0.411
2014 Kang MK, Lee J, Um Y, Lee TS, Bott M, Park SJ, Woo HM. Synthetic biology platform of CoryneBrick vectors for gene expression in Corynebacterium glutamicum and its application to xylose utilization. Applied Microbiology and Biotechnology. 98: 5991-6002. PMID 24706215 DOI: 10.1007/S00253-014-5714-7  0.343
2014 George KW, Chen A, Jain A, Batth TS, Baidoo EE, Wang G, Adams PD, Petzold CJ, Keasling JD, Lee TS. Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production. Biotechnology and Bioengineering. 111: 1648-58. PMID 24615242 DOI: 10.1002/Bit.25226  0.412
2014 Mack JH, Rapp VH, Broeckelmann M, Lee TS, Dibble RW. Investigation of biofuels from microorganism metabolism for use as anti-knock additives Fuel. 117: 939-943. DOI: 10.1016/J.Fuel.2013.10.024  0.323
2013 Dahl RH, Zhang F, Alonso-Gutierrez J, Baidoo E, Batth TS, Redding-Johanson AM, Petzold CJ, Mukhopadhyay A, Lee TS, Adams PD, Keasling JD. Engineering dynamic pathway regulation using stress-response promoters. Nature Biotechnology. 31: 1039-46. PMID 24142050 DOI: 10.1038/Nbt.2689  0.389
2013 Alonso-Gutierrez J, Chan R, Batth TS, Adams PD, Keasling JD, Petzold CJ, Lee TS. Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production. Metabolic Engineering. 19: 33-41. PMID 23727191 DOI: 10.1016/J.Ymben.2013.05.004  0.42
2013 Müller J, MacEachran D, Burd H, Sathitsuksanoh N, Bi C, Yeh YC, Lee TS, Hillson NJ, Chhabra SR, Singer SW, Beller HR. Engineering of Ralstonia eutropha H16 for autotrophic and heterotrophic production of methyl ketones. Applied and Environmental Microbiology. 79: 4433-9. PMID 23686271 DOI: 10.1128/Aem.00973-13  0.396
2013 Bokinsky G, Baidoo EE, Akella S, Burd H, Weaver D, Alonso-Gutierrez J, García-Martín H, Lee TS, Keasling JD. HipA-triggered growth arrest and β-lactam tolerance in Escherichia coli are mediated by RelA-dependent ppGpp synthesis. Journal of Bacteriology. 195: 3173-82. PMID 23667235 DOI: 10.1128/Jb.02210-12  0.369
2013 Özaydın B, Burd H, Lee TS, Keasling JD. Carotenoid-based phenotypic screen of the yeast deletion collection reveals new genes with roles in isoprenoid production. Metabolic Engineering. 15: 174-83. PMID 22918085 DOI: 10.1016/J.Ymben.2012.07.010  0.403
2013 Woo HM, Murray GW, Batth TS, Prasad N, Adams PD, Keasling JD, Petzold CJ, Lee TS. Application of targeted proteomics and biological parts assembly in E. coli to optimize the biosynthesis of an anti-malarial drug precursor, amorpha-4,11-diene Chemical Engineering Science. 103: 21-28. DOI: 10.1016/J.Ces.2013.04.033  0.39
2012 Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, et al. A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels. Plos One. 7: e37010. PMID 22649505 DOI: 10.1371/Journal.Pone.0037010  0.352
2012 Satoh Y, Tajima K, Munekata M, Keasling JD, Lee TS. Engineering of a tyrosol-producing pathway, utilizing simple sugar and the central metabolic tyrosine, in Escherichia coli. Journal of Agricultural and Food Chemistry. 60: 979-84. PMID 22225426 DOI: 10.1021/Jf203256F  0.416
2011 Bokinsky G, Peralta-Yahya PP, George A, Holmes BM, Steen EJ, Dietrich J, Lee TS, Tullman-Ercek D, Voigt CA, Simmons BA, Keasling JD. Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 108: 19949-54. PMID 22123987 DOI: 10.1073/Pnas.1106958108  0.426
2011 Peralta-Yahya PP, Ouellet M, Chan R, Mukhopadhyay A, Keasling JD, Lee TS. Identification and microbial production of a terpene-based advanced biofuel. Nature Communications. 2: 483. PMID 21952217 DOI: 10.1038/Ncomms1494  0.404
2011 Ma SM, Garcia DE, Redding-Johanson AM, Friedland GD, Chan R, Batth TS, Haliburton JR, Chivian D, Keasling JD, Petzold CJ, Lee TS, Chhabra SR. Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases. Metabolic Engineering. 13: 588-97. PMID 21810477 DOI: 10.1016/J.Ymben.2011.07.001  0.406
2011 Dunlop MJ, Dossani ZY, Szmidt HL, Chu HC, Lee TS, Keasling JD, Hadi MZ, Mukhopadhyay A. Engineering microbial biofuel tolerance and export using efflux pumps. Molecular Systems Biology. 7: 487. PMID 21556065 DOI: 10.1038/Msb.2011.21  0.394
2011 Redding-Johanson AM, Batth TS, Chan R, Krupa R, Szmidt HL, Adams PD, Keasling JD, Lee TS, Mukhopadhyay A, Petzold CJ. Targeted proteomics for metabolic pathway optimization: application to terpene production. Metabolic Engineering. 13: 194-203. PMID 21215324 DOI: 10.1016/J.Ymben.2010.12.005  0.418
2008 Lee SK, Chou H, Ham TS, Lee TS, Keasling JD. Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Current Opinion in Biotechnology. 19: 556-63. PMID 18996194 DOI: 10.1016/J.Copbio.2008.10.014  0.418
2008 Fortman JL, Chhabra S, Mukhopadhyay A, Chou H, Lee TS, Steen E, Keasling JD. Biofuel alternatives to ethanol: pumping the microbial well. Trends in Biotechnology. 26: 375-81. PMID 18471913 DOI: 10.1016/J.Tibtech.2008.03.008  0.375
2007 Lee TS, Das A, Khosla C. Structure-activity relationships of semisynthetic mumbaistatin analogs. Bioorganic & Medicinal Chemistry. 15: 5207-18. PMID 17524653 DOI: 10.1016/J.Bmc.2007.05.019  0.637
2005 Lee TS, Khosla C, Tang Y. Orthogonal protein interactions in spore pigment producing and antibiotic producing polyketide synthases. The Journal of Antibiotics. 58: 663-6. PMID 16392683 DOI: 10.1038/Ja.2005.91  0.627
2005 Lee TS, Khosla C, Tang Y. Engineered biosynthesis of aklanonic acid analogues. Journal of the American Chemical Society. 127: 12254-62. PMID 16131203 DOI: 10.1021/Ja051429Z  0.67
2004 Tang Y, Lee TS, Khosla C. Engineered biosynthesis of regioselectively modified aromatic polyketides using bimodular polyketide synthases. Plos Biology. 2: E31. PMID 14966533 DOI: 10.1371/Journal.Pbio.0020031  0.67
2004 Tang Y, Lee TS, Lee HY, Khosla C. Exploring the biosynthetic potential of bimodular aromatic polyketide synthases Tetrahedron. 60: 7659-7671. DOI: 10.1016/J.Tet.2004.05.118  0.667
2003 Tang Y, Lee TS, Kobayashi S, Khosla C. Ketosynthases in the initiation and elongation modules of aromatic polyketide synthases have orthogonal acyl carrier protein specificity. Biochemistry. 42: 6588-95. PMID 12767243 DOI: 10.1021/Bi0341962  0.659
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