Year |
Citation |
Score |
2018 |
Castaneda N, Zheng T, Rivera-Jacquez HJ, Lee HJ, Hyun J, Balaeff A, Huo Q, Kang H. Cations Modulate Actin Bundle Mechanics, Assembly Dynamics, and Structure. The Journal of Physical Chemistry. B. PMID 29608304 DOI: 10.1021/Acs.Jpcb.8B00663 |
0.347 |
|
2018 |
Sha R, Xiang L, Liu C, Balaeff A, Zhang Y, Zhang P, Li Y, Beratan DN, Tao N, Seeman NC. Charge splitters and charge transport junctions based on guanine quadruplexes. Nature Nanotechnology. PMID 29483600 DOI: 10.1038/S41565-018-0070-X |
0.623 |
|
2018 |
Balaeff A, Kuznetsov AE. Three Ligands with Biomedical Importance: Binding to Small ZnS Quantum Dots The Journal of Physical Chemistry C. 122: 12454-12463. DOI: 10.1021/Acs.Jpcc.8B00936 |
0.302 |
|
2016 |
Ignatova T, Balaeff A, Blades M, Zheng M, Stoeckl P, Rotkin SV. Two-color spectroscopy of UV excited ssDNA complex with a single-wall nanotube photoluminescence probe: Fast relaxation by nucleobase autoionization mechanism Nano Research. 1-13. DOI: 10.1007/S12274-015-0938-0 |
0.531 |
|
2015 |
Zhang Y, Zhang WB, Liu C, Zhang P, Balaeff A, Beratan DN. DNA charge transport: Moving beyond 1D Surface Science. DOI: 10.1016/J.Susc.2016.03.011 |
0.664 |
|
2014 |
Zhang Y, Liu C, Balaeff A, Skourtis SS, Beratan DN. Biological charge transfer via flickering resonance. Proceedings of the National Academy of Sciences of the United States of America. 111: 10049-54. PMID 24965367 DOI: 10.1073/Pnas.1316519111 |
0.672 |
|
2012 |
Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Reppireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes. Journal of the American Chemical Society. 134: 9335-42. PMID 22548314 DOI: 10.1021/Ja301677Z |
0.711 |
|
2012 |
Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Correction to Effect of Backbone Flexibility on Charge Transfer Rates in Peptide Nucleic Acid Duplexes Journal of the American Chemical Society. 134: 13141-13141. DOI: 10.1021/Ja306598Z |
0.71 |
|
2011 |
Balaeff A, Craig SL, Beratan DN. B-DNA to zip-DNA: simulating a DNA transition to a novel structure with enhanced charge-transport characteristics. The Journal of Physical Chemistry. A. 115: 9377-91. PMID 21598926 DOI: 10.1021/Jp110871G |
0.634 |
|
2011 |
Venkatramani R, Keinan S, Balaeff A, Beratan DN. Nucleic Acid Charge Transfer: Black, White and Gray. Coordination Chemistry Reviews. 255: 635-648. PMID 21528017 DOI: 10.1016/J.Ccr.2010.12.010 |
0.746 |
|
2011 |
Venkatramani R, Davis KL, Wierzbinski E, Bezer S, Balaeff A, Keinan S, Paul A, Kocsis L, Beratan DN, Achim C, Waldeck DH. Evidence for a near-resonant charge transfer mechanism for double-stranded peptide nucleic acid. Journal of the American Chemical Society. 133: 62-72. PMID 21141966 DOI: 10.1021/Ja107622M |
0.732 |
|
2011 |
Wolak MA, Balaeff A, Gutmann S, Helmrich HJ, Vosloo R, Beerbom MM, Wierzbinski E, Waldeck DH, Bezer S, Achim C, Beratan DN, Schlaf R. Electronic structure of self-assembled peptide nucleic acid thin films Journal of Physical Chemistry C. 115: 17123-17135. DOI: 10.1021/Jp201602J |
0.601 |
|
2010 |
Keinan S, Venkatramani R, Balaeff A, Beratan DN. Is MD geometry sampling sufficient for nucleobase electronic structure analysis of et reactions? Comparing classical MD and QM/MM methods Journal of Physical Chemistry C. 114: 20496-20502. DOI: 10.1021/Jp104919G |
0.728 |
|
2009 |
Beratan DN, Skourtis SS, Balabin IA, Balaeff A, Keinan S, Venkatramani R, Xiao D. Steering electrons on moving pathways. Accounts of Chemical Research. 42: 1669-78. PMID 19645446 DOI: 10.1021/Ar900123T |
0.711 |
|
2009 |
Paul A, Bezer S, Venkatramani R, Kocsis L, Wierzbinski E, Balaeff A, Keinan S, Beratan DN, Achim C, Waldeck DH. Role of nucleobase energetics and nucleobase interactions in single-stranded peptide nucleic acid charge transfer. Journal of the American Chemical Society. 131: 6498-507. PMID 19382798 DOI: 10.1021/Ja9000163 |
0.733 |
|
2008 |
He W, Hatcher E, Balaeff A, Beratan DN, Gil RR, Madrid M, Achim C. Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations. Journal of the American Chemical Society. 130: 13264-73. PMID 18781753 DOI: 10.1021/Ja800652H |
0.582 |
|
2008 |
Hatcher E, Balaeff A, Keinan S, Venkatramani R, Beratan DN. PNA versus DNA: effects of structural fluctuations on electronic structure and hole-transport mechanisms. Journal of the American Chemical Society. 130: 11752-61. PMID 18693722 DOI: 10.1021/Ja802541E |
0.768 |
|
2006 |
Balaeff A, Mahadevan L, Schulten K. Modeling DNA loops using the theory of elasticity Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 73. PMID 16605570 DOI: 10.1103/Physreve.73.031919 |
0.579 |
|
2005 |
Villa E, Balaeff A, Schulten K. Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation. Proceedings of the National Academy of Sciences of the United States of America. 102: 6783-8. PMID 15863616 DOI: 10.1073/Pnas.0409387102 |
0.657 |
|
2004 |
Balaeff A, Koudella CR, Mahadevan L, Schulten K. Modelling DNA loops using continuum and statistical mechanics Philosophical Transactions of the Royal Society a: Mathematical, Physical and Engineering Sciences. 362: 1355-1371. PMID 15306455 DOI: 10.1098/Rsta.2004.1384 |
0.565 |
|
2004 |
Balaeff A, Mahadevan L, Schulten K. Structural Basis for Cooperative DNA Binding by CAP and Lac Repressor Structure. 12: 123-132. PMID 14725772 DOI: 10.1016/J.Str.2003.12.004 |
0.533 |
|
2004 |
Villa E, Balaeff A, Mahadevan L, Schulten K. Multiscale Method for Simulating Protein-DNA Complexes Multiscale Modeling & Simulation. 2: 527-553. DOI: 10.1137/040604789 |
0.65 |
|
2000 |
Balaeff A, Mahadevan L, Shi G, Schulten K. Elastic Rod Model of DNA Loops Biochemical Society Transactions. 28: A446-A446. DOI: 10.1042/Bst028A446 |
0.522 |
|
1999 |
Balaeff A, Mahadevan L, Schulten K. Elastic Rod Model of a DNA Loop in theLacOperon Physical Review Letters. 83: 4900-4903. DOI: 10.1103/Physrevlett.83.4900 |
0.511 |
|
1998 |
Balaeff A, Churchill MEA, Schulten K. Structure prediction of a complex between the chromosomal protein HMG-D and DNA Proteins: Structure, Function and Genetics. 30: 113-135. PMID 9489920 DOI: 10.1002/(Sici)1097-0134(19980201)30:2<113::Aid-Prot2>3.0.Co;2-O |
0.555 |
|
1994 |
Lysov YuP, Chernyi AA, Balaeff AA, Beattie KL, Mirzabekov AD. DNA sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency. Journal of Biomolecular Structure & Dynamics. 11: 797-812. PMID 8204215 DOI: 10.1080/07391102.1994.10508033 |
0.333 |
|
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