Donglei Bu, Ph.D. - Publications

2012 Chemistry University of California, Davis, Davis, CA 
General, Biomechanics

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Jin D, Zhao S, Wang P, Zheng N, Bu D, Beckers Y, Wang J. Insights into Abundant Rumen Ureolytic Bacterial Community Using Rumen Simulation System. Frontiers in Microbiology. 7: 1006. PMID 27446045 DOI: 10.3389/fmicb.2016.01006  0.36
2016 Qin C, Bu D, Sun P, Zhao X, Zhang P, Wang J. Effects of corn straw or mixed forage diet on rumen fermentation parameters of lactating cows using a wireless data logger. Animal Science Journal = Nihon Chikusan Gakkaiho. PMID 27273798 DOI: 10.1111/asj.12616  0.36
2016 Zhang H, Huang Y, Bu D, Chen S, Tang C, Wang G, Du J, Jin H. Endogenous sulfur dioxide is a novel adipocyte-derived inflammatory inhibitor. Scientific Reports. 6: 27026. PMID 27246393 DOI: 10.1038/srep27026  0.32
2016 Zhang H, Gao Y, Deng M, Wang C, Zhu J, Li SC, Zheng WM, Bu D. Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix. Biochemical and Biophysical Research Communications. PMID 26920058 DOI: 10.1016/j.bbrc.2016.01.188  0.32
2016 Sun P, Li J, Bu D, Nan X, Du H. Effects of Bacillus subtilis natto and Different Components in Culture on Rumen Fermentation and Rumen Functional Bacteria In Vitro. Current Microbiology. PMID 26821238 DOI: 10.1007/s00284-016-0986-z  0.36
2015 Bollmann S, Bu D, Wang J, Bionaz M. Unmasking Upstream Gene Expression Regulators with miRNA-corrected mRNA Data. Bioinformatics and Biology Insights. 9: 33-48. PMID 27279737 DOI: 10.4137/BBI.S29332  0.36
2015 Zhao M, Bu D, Wang J, Zhou X, Zhu D, Zhang T, Niu J, Ma L. Milk production and composition responds to dietary neutral detergent fiber and starch ratio in dairy cows. Animal Science Journal = Nihon Chikusan Gakkaiho. PMID 26712573 DOI: 10.1111/asj.12482  0.36
2015 Sun S, Wang X, Gao X, Ren L, Su X, Bu D, Ning K. Condensing Raman spectrum for single-cell phenotype analysis. Bmc Bioinformatics. 16: S15. PMID 26681607 DOI: 10.1186/1471-2105-16-S18-S15  0.36
2015 Zhao Y, Li H, Fang S, Kang Y, Wu W, Hao Y, Li Z, Bu D, Sun N, Zhang MQ, Chen R. NONCODE 2016: an informative and valuable data source of long non-coding RNAs. Nucleic Acids Research. PMID 26586799 DOI: 10.1093/nar/gkv1252  0.32
2015 Wang C, Zhang H, Zheng WM, Xu D, Zhu J, Wang B, Ning K, Sun S, Li SC, Bu D. FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinformatics (Oxford, England). PMID 26454278 DOI: 10.1093/bioinformatics/btv581  0.36
2015 Zhang J, Zhao S, Zhang Y, Sun P, Bu D, Wang J. New Primers Targeting Full-Length Ciliate 18S rRNA Genes and Evaluation of Dietary Effect on Rumen Ciliate Diversity in Dairy Cows. Current Microbiology. PMID 26319789 DOI: 10.1007/s00284-015-0898-3  0.36
2015 Li YQ, Bu DC, Di LB, Zhang XL, Liu ZS, Li XH. Experimental Study of Coaxial Cylinder Dielectric Barrier Discharge in Ar/NH3 Mixtures under the Atmosphere-Pressure. Guang Pu Xue Yu Guang Pu Fen Xi = Guang Pu. 35: 765-71. PMID 26117894  0.44
2015 Zhao S, Wang J, Zheng N, Bu D, Sun P, Yu Z. Reducing microbial ureolytic activity in the rumen by immunization against urease therein. Bmc Veterinary Research. 11: 94. PMID 25889568 DOI: 10.1186/s12917-015-0409-6  0.36
2015 Wang Y, Yang F, Wu P, Bu D, Sun S. OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction. Bmc Bioinformatics. 16: 110. PMID 25887925 DOI: 10.1186/s12859-015-0540-1  0.36
2014 Wang YM, Huang YS, Ma ZH, Bu DF, Wang Y, Tu P, Li H. Frequency and features of TP53 mutation in 30 Chinese patients with sporadic basal cell carcinoma. Clinical and Experimental Dermatology. 39: 829-34. PMID 25196205 DOI: 10.1111/ced.12411  0.36
2014 Qin YS, Bu DX, Cui YY, Zhang XY. Difference in glycerol levels between leukemia and normal bone marrow stem cells. Oncology Letters. 8: 169-174. PMID 24959239 DOI: 10.3892/ol.2014.2142  0.32
2014 Miao R, Luo H, Zhou H, Li G, Bu D, Yang X, Zhao X, Zhang H, Liu S, Zhong Y, Zou Z, Zhao Y, Yu K, He L, Sang X, et al. Identification of prognostic biomarkers in hepatitis B virus-related hepatocellular carcinoma and stratification by integrative multi-omics analysis. Journal of Hepatology. 61: 840-9. PMID 24859455 DOI: 10.1016/j.jhep.2014.05.025  0.36
2014 Wang M, Xu B, Wang H, Bu D, Wang J, Loor JJ. Effects of Arginine concentration on the in vitro expression of Casein and mTOR pathway related genes in mammary epithelial cells from dairy cattle. Plos One. 9: e95985. PMID 24788778 DOI: 10.1371/journal.pone.0095985  0.36
2014 Zhao S, Zhao J, Bu D, Sun P, Wang J, Dong Z. Metabolomics analysis reveals large effect of roughage types on rumen microbial metabolic profile in dairy cows. Letters in Applied Microbiology. 59: 79-85. PMID 24617926 DOI: 10.1111/lam.12247  0.36
2014 Wang X, Zhang N, Ning X, Li T, Wu P, Peng S, Fan Y, Bu D, Gong K. Higher prevalence of novel mutations in VHL gene in Chinese Von Hippel-Lindau disease patients. Urology. 83: 675.e1-5. PMID 24581539 DOI: 10.1016/j.urology.2013.09.069  0.36
2014 Nan X, Bu D, Li X, Wang J, Wei H, Hu H, Zhou L, Loor JJ. Ratio of lysine to methionine alters expression of genes involved in milk protein transcription and translation and mTOR phosphorylation in bovine mammary cells. Physiological Genomics. 46: 268-75. PMID 24474444 DOI: 10.1152/physiolgenomics.00119.2013  0.36
2014 Han R, Zheng N, Zhang Y, Zhao X, Bu D, An P, Xu X, Liu S, Wang J. Milk fatty acid profiles in Holstein dairy cows fed diets based on corn stover or mixed forage. Archives of Animal Nutrition. 68: 63-71. PMID 24422608 DOI: 10.1080/1745039X.2013.869986  0.36
2014 Xie C, Yuan J, Li H, Li M, Zhao G, Bu D, Zhu W, Wu W, Chen R, Zhao Y. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Research. 42: D98-103. PMID 24285305 DOI: 10.1093/nar/gkt1222  0.32
2013 Yang Y, Wang J, Yuan T, Bu D, Yang J, Sun P. Proteome profile of bovine ruminal epithelial tissue based on GeLC-MS/MS. Biotechnology Letters. 35: 1831-8. PMID 23974490 DOI: 10.1007/s10529-013-1291-6  0.36
2013 Luo H, Sun S, Li P, Bu D, Cao H, Zhao Y. Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing. Plos One. 8: e70835. PMID 23951020 DOI: 10.1371/journal.pone.0070835  0.36
2013 Zhao G, Jiao F, Liao Q, Luo H, Li H, Sun L, Bu D, Yu K, Zhao Y, Chen R. Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines. Science China. Life Sciences. 56: 503-12. PMID 23666362 DOI: 10.1007/s11427-013-4485-1  0.32
2013 Yang Y, Bu D, Zhao X, Sun P, Wang J, Zhou L. Proteomic analysis of cow, yak, buffalo, goat and camel milk whey proteins: quantitative differential expression patterns. Journal of Proteome Research. 12: 1660-7. PMID 23464874 DOI: 10.1021/pr301001m  0.36
2013 Sun Y, Bu DP, Wang JQ, Cui H, Zhao XW, Xu XY, Sun P, Zhou LY. Supplementing different ratios of short- and medium-chain fatty acids to long-chain fatty acids in dairy cows: changes of milk fat production and milk fatty acids composition. Journal of Dairy Science. 96: 2366-73. PMID 23415518 DOI: 10.3168/jds.2012-5356  0.36
2013 Yang Y, Wang J, Yuan T, Bu D, Yang J, Zhou L, Sun P, Zhang J. Impact of region on the composition of milk fatty acids in China. Journal of the Science of Food and Agriculture. 93: 2864-9. PMID 23401091 DOI: 10.1002/jsfa.5999  0.36
2013 Wu P, Zhang N, Wang X, Li T, Ning X, Bu D, Gong K. Mosaicism in von Hippel-Lindau disease with severe renal manifestations. Clinical Genetics. 84: 581-4. PMID 23384228 DOI: 10.1111/cge.12092  0.36
2013 Han J, Liu Y, Rao F, Nievergelt CM, O'Connor DT, Wang X, Liu L, Bu D, Liang Y, Wang F, Zhang L, Zhang H, Chen Y, Wang H. Common genetic variants of the human uromodulin gene regulate transcription and predict plasma uric acid levels. Kidney International. 83: 733-40. PMID 23344472 DOI: 10.1038/ki.2012.449  0.32
2013 Yang YX, Wang JQ, Yuan TJ, Bu DP, Yang JH, Sun P, Zhou LY. Effects of duodenal infusion of free α-linolenic acid on the plasma and milk proteome of lactating dairy cows. Animal : An International Journal of Animal Bioscience. 7: 293-9. PMID 23031206 DOI: 10.1017/S175173111200153X  0.36
2013 Huang YS, Bu DF, Li XY, Ma ZH, Yang Y, Lin ZM, Lu FM, Tu P, Li H. Unique features of PTCH1 mutation spectrum in Chinese sporadic basal cell carcinoma. Journal of the European Academy of Dermatology and Venereology : Jeadv. 27: 235-41. PMID 22313357 DOI: 10.1111/j.1468-3083.2012.04453.x  0.32
2012 Wang M, Moisá S, Khan MJ, Wang J, Bu D, Loor JJ. MicroRNA expression patterns in the bovine mammary gland are affected by stage of lactation. Journal of Dairy Science. 95: 6529-35. PMID 22959945 DOI: 10.3168/jds.2012-5748  0.36
2012 Sun S, Yang F, Yang Q, Zhang H, Wang Y, Bu D, Ma B. MS-Simulator: predicting y-ion intensities for peptides with two charges based on the intensity ratio of neighboring ions. Journal of Proteome Research. 11: 4509-16. PMID 22794508 DOI: 10.1021/pr300235v  0.36
2012 Zhao X, Bu DX, Hayfron K, Pinkerton KE, Bevins CL, Lichtman A, Wiedeman J. A combination of secondhand cigarette smoke and Chlamydia pneumoniae accelerates atherosclerosis. Atherosclerosis. 222: 59-66. PMID 22410122 DOI: 10.1016/j.atherosclerosis.2012.02.005  0.36
2012 Lin Z, Chen Q, Lee M, Cao X, Zhang J, Ma D, Chen L, Hu X, Wang H, Wang X, Zhang P, Liu X, Guan L, Tang Y, Yang H, ... ... Bu D, et al. Exome sequencing reveals mutations in TRPV3 as a cause of Olmsted syndrome. American Journal of Human Genetics. 90: 558-64. PMID 22405088 DOI: 10.1016/j.ajhg.2012.02.006  0.36
2012 Wu P, Zhang N, Wang X, Ning X, Li T, Bu D, Gong K. Family history of von Hippel-Lindau disease was uncommon in Chinese patients: suggesting the higher frequency of de novo mutations in VHL gene in these patients. Journal of Human Genetics. 57: 238-43. PMID 22357542 DOI: 10.1038/jhg.2012.10  0.36
2012 Bu D, Yu K, Sun S, Xie C, Skogerbø G, Miao R, Xiao H, Liao Q, Luo H, Zhao G, Zhao H, Liu Z, Liu C, Chen R, Zhao Y. NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Research. 40: D210-5. PMID 22135294 DOI: 10.1093/nar/gkr1175  0.36
2012 Peng H, Wang JQ, Kang HY, Dong SH, Sun P, Bu DP, Zhou LY. Effect of feeding Bacillus subtilis natto fermentation product on milk production and composition, blood metabolites and rumen fermentation in early lactation dairy cows. Journal of Animal Physiology and Animal Nutrition. 96: 506-12. PMID 21635575 DOI: 10.1111/j.1439-0396.2011.01173.x  0.36
2011 Zhang S, Wang Y, Bu D, Zhang H, Sun S. ProbPS: a new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity. Bmc Bioinformatics. 12: 346. PMID 21849060 DOI: 10.1186/1471-2105-12-346  0.36
2011 Qiao Y, Zhang H, Bu D, Sun S. PI: an open-source software package for validation of the SEQUEST result and visualization of mass spectrum. Bmc Bioinformatics. 12: 234. PMID 21672262 DOI: 10.1186/1471-2105-12-234  0.36
2011 Liu SJ, Bu DP, Wang JQ, Sun P, Wei HY, Zhou LY, Yu ZT. Effect of ruminal pulse dose of polyunsaturated fatty acids on ruminal microbial populations and duodenal flow and milk profiles of fatty acids. Journal of Dairy Science. 94: 2977-85. PMID 21605768 DOI: 10.3168/jds.2010-3109  0.36
2010 Lan XY, Wang JQ, Bu DP, Shen JS, Zheng N, Sun P. Effects of heating temperatures and addition of reconstituted milk on the heat indicators in milk. Journal of Food Science. 75: C653-8. PMID 21535481 DOI: 10.1111/j.1750-3841.2010.01802.x  0.36
2010 Bu D, Mullen TJ, Liu GY. Regulation of local structure and composition of binary disulfide and thiol self-assembled monolayers using nanografting. Acs Nano. 4: 6863-73. PMID 20931979 DOI: 10.1021/nn101680h  0.36
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