Ekaterina A. Khramtsova, Ph.D. - Related publications

Affiliations: 
2014 Pathology University of Chicago, Chicago, IL 
Area:
Pathology, Physiology Biology, General Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Gamache I, Legault MA, Grenier JC, Sanchez R, Rhéaume E, Asgari S, Barhdadi A, Zada YF, Trochet H, Luo Y, Lecca L, Murray M, Raychaudhuri S, Tardif JC, Dubé MP, et al. A sex-specific evolutionary interaction between and . Elife. 10. PMID 34609279 DOI: 10.7554/eLife.69198   
2021 Sun H, Lan X, Ma L, Zhou J. Revealing modifier variations characterizations for elucidating the genetic basis of human phenotypic variations. Human Genetics. PMID 34498116 DOI: 10.1007/s00439-021-02362-4   
2021 Joslin AC, Sobreira DR, Hansen GT, Sakabe NJ, Aneas I, Montefiori LE, Farris KM, Gu J, Lehman DM, Ober C, He X, Nóbrega MA. A functional genomics pipeline identifies pleiotropy and cross-tissue effects within obesity-associated GWAS loci. Nature Communications. 12: 5253. PMID 34489471 DOI: 10.1038/s41467-021-25614-3   
2021 Wang YJ, Mugiyanto E, Peng YT, Huang WC, Chou WH, Lee CC, Wang YS, Irham LM, Perwitasari DA, Hsu MI, Chang WC. Genetic Association of the Functional Gene in Male Fertility. Journal of Personalized Medicine. 11. PMID 34442404 DOI: 10.3390/jpm11080760   
2021 Balliu B, Carcamo-Orive I, Gloudemans MJ, Nachun DC, Durrant MG, Gazal S, Park CY, Knowles DA, Wabitsch M, Quertermous T, Knowles JW, Montgomery SB. An integrated approach to identify environmental modulators of genetic risk factors for complex traits. American Journal of Human Genetics. PMID 34582792 DOI: 10.1016/j.ajhg.2021.08.014   
2021 Zhu H, Zheng F, Li L, Jin Y, Luo Y, Li Z, Zeng J, Tang L, Li Z, Xia N, Liu P, Han D, Shan Y, Zhu X, Liu S, et al. A Chinese host genetic study discovered IFNs and causality of laboratory traits on COVID-19 severity. Iscience. 103186. PMID 34608450 DOI: 10.1016/j.isci.2021.103186   
2021 Medico-Salsench E, Karkala F, Lanko K, Barakat TS. The non-coding genome in genetic brain disorders: new targets for therapy? Essays in Biochemistry. PMID 34414418 DOI: 10.1042/EBC20200121   
2021 Cleary S, Seoighe C. Perspectives on Allele-Specific Expression. Annual Review of Biomedical Data Science. 4: 101-122. PMID 34465174 DOI: 10.1146/annurev-biodatasci-021621-122219   
2021 Kerimov N, Hayhurst JD, Peikova K, Manning JR, Walter P, Kolberg L, Samoviča M, Sakthivel MP, Kuzmin I, Trevanion SJ, Burdett T, Jupp S, Parkinson H, Papatheodorou I, Yates AD, et al. A compendium of uniformly processed human gene expression and splicing quantitative trait loci. Nature Genetics. 53: 1290-1299. PMID 34493866 DOI: 10.1038/s41588-021-00924-w   
2021 Aygün N, Elwell AL, Liang D, Lafferty MJ, Cheek KE, Courtney KP, Mory J, Hadden-Ford E, Krupa O, de la Torre-Ubieta L, Geschwind DH, Love MI, Stein JL. Brain-trait-associated variants impact cell-type-specific gene regulation during neurogenesis. American Journal of Human Genetics. PMID 34416157 DOI: 10.1016/j.ajhg.2021.07.011   
2021 Zhang Y, Wang Y, Zhou W, Zheng S, Ye R. Detection of candidate gene networks involved in resistance to Sclerotinia sclerotiorum in soybean. Journal of Applied Genetics. PMID 34510383 DOI: 10.1007/s13353-021-00654-z   
2021 Findley AS, Zhang X, Boye C, Lin YL, Kalita CA, Barreiro L, Lohmueller KE, Pique-Regi R, Luca F. A signature of Neanderthal introgression on molecular mechanisms of environmental responses. Plos Genetics. 17: e1009493. PMID 34570765 DOI: 10.1371/journal.pgen.1009493   
2021 Westerman KE, Lin J, Sevilla-Gonzalez M, Tadess B, Marchek C, Manning AK. Gene-environment interaction analysis incorporating sex, cardiometabolic diseases, and multiple deprivation index reveals novel genetic associations with COVID-19 severity. Medrxiv : the Preprint Server For Health Sciences. PMID 34462758 DOI: 10.1101/2021.08.13.21261910   
2021 Cui Y, Peng F, Wang D, Li Y, Li JS, Li L, Li W. 3'aQTL-atlas: an atlas of 3'UTR alternative polyadenylation quantitative trait loci across human normal tissues. Nucleic Acids Research. PMID 34432052 DOI: 10.1093/nar/gkab740   
2021 Kwong A, Boughton AP, Wang M, VandeHaar P, Boehnke M, Abecasis G, Kang HM. FIVEx: an interactive eQTL browser across public datasets. Bioinformatics (Oxford, England). PMID 34459872 DOI: 10.1093/bioinformatics/btab614   
2021 Jung WJ, Lee YJ, Kang CS, Seo YW. Identification of genetic loci associated with major agronomic traits of wheat (Triticum aestivum L.) based on genome-wide association analysis. Bmc Plant Biology. 21: 418. PMID 34517837 DOI: 10.1186/s12870-021-03180-6   
2021 Guan Y, Liang X, Ma Z, Hu H, Liu H, Miao Z, Linkermann A, Hellwege JN, Voight BF, Susztak K. A single genetic locus controls both expression of DPEP1/CHMP1A and kidney disease development via ferroptosis. Nature Communications. 12: 5078. PMID 34426578 DOI: 10.1038/s41467-021-25377-x   
2021 Dong C, Simonett SP, Shin S, Stapleton DS, Schueler KL, Churchill GA, Lu L, Liu X, Jin F, Li Y, Attie AD, Keller MP, Keleş S. INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants. Genome Biology. 22: 241. PMID 34425882 DOI: 10.1186/s13059-021-02450-8   
2021 Liu D, Ban HJ, El Sergani AM, Lee MK, Hecht JT, Wehby GL, Moreno LM, Feingold E, Marazita ML, Cha S, Szabo-Rogers HL, Weinberg SM, Shaffer JR. × Interaction Revealed by Genome-Wide vQTL Analysis of Human Facial Traits. Frontiers in Genetics. 12: 674642. PMID 34434215 DOI: 10.3389/fgene.2021.674642   
2021 Hai Q, Smith JD. Acyl-Coenzyme A: Cholesterol Acyltransferase (ACAT) in Cholesterol Metabolism: From Its Discovery to Clinical Trials and the Genomics Era. Metabolites. 11. PMID 34436484 DOI: 10.3390/metabo11080543   
2021 Chevin LM, Leung C, Le Rouzic A, Uller T. Using phenotypic plasticity to understand the structure and evolution of the genotype-phenotype map. Genetica. PMID 34617196 DOI: 10.1007/s10709-021-00135-5   
2021 Li X, Pan X, Zhou H, Wang P, Gao Y, Shang S, Guo S, Sun J, Xiong Z, Ning S, Zhi H, Li X. Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer. Briefings in Bioinformatics. PMID 34581409 DOI: 10.1093/bib/bbab401   
2021 Sin S, Choi HM, Lim J, Kim J, Bak SH, Choi SS, Park J, Lee JH, Oh YM, Lee MK, Hobbs BD, Cho MH, Silverman EK, Kim WJ. A genome-wide association study of quantitative computed tomographic emphysema in Korean populations. Scientific Reports. 11: 16692. PMID 34404834 DOI: 10.1038/s41598-021-95887-7   
2021 Arnatkeviciute A, Fulcher BD, Bellgrove MA, Fornito A. Where the genome meets the connectome: Understanding how genes shape human brain connectivity. Neuroimage. 244: 118570. PMID 34508898 DOI: 10.1016/j.neuroimage.2021.118570   
2021 Sakaue S, Kanai M, Tanigawa Y, Karjalainen J, Kurki M, Koshiba S, Narita A, Konuma T, Yamamoto K, Akiyama M, Ishigaki K, Suzuki A, Suzuki K, Obara W, Yamaji K, ... , et al. A cross-population atlas of genetic associations for 220 human phenotypes. Nature Genetics. 53: 1415-1424. PMID 34594039 DOI: 10.1038/s41588-021-00931-x   
2021 Arendt M, Ambrosen A, Fall T, Kierczak M, Tengvall K, Meadows JRS, Karlsson Å, Lagerstedt AS, Bergström T, Andersson G, Lindblad-Toh K, Hagman R. The ABCC4 gene is associated with pyometra in golden retriever dogs. Scientific Reports. 11: 16647. PMID 34404837 DOI: 10.1038/s41598-021-95936-1   
2021 Li P, Zhou J, Wang D, Li L, Xiao L, Quan M, Lu W, Yao L, Fang Y, Lv C, Song F, Du Q, Zhang D. Genetic Architecture and Genome-Wide Adaptive Signatures Underlying Stem Lenticel Traits in . International Journal of Molecular Sciences. 22. PMID 34502156 DOI: 10.3390/ijms22179249   
2021 Zheng Y, Hou P, Zhu L, Song W, Liu H, Huang Y, Wang H, Guo J. Genome-Wide Association Study of Vascular Bundle-Related Traits in Maize Stalk. Frontiers in Plant Science. 12: 699486. PMID 34504506 DOI: 10.3389/fpls.2021.699486   
2021 Zhan L, Li J, Jew B, Sul JH. Rare variants in the endocytic pathway are associated with Alzheimer's disease, its related phenotypes, and functional consequences. Plos Genetics. 17: e1009772. PMID 34516545 DOI: 10.1371/journal.pgen.1009772   
2021 Pineda-Cirera L, Cabana-Domínguez J, Lee PH, Fernàndez-Castillo N, Cormand B. Identification of genetic variants influencing methylation in brain with pleiotropic effects on psychiatric disorders. Progress in Neuro-Psychopharmacology & Biological Psychiatry. 110454. PMID 34637873 DOI: 10.1016/j.pnpbp.2021.110454   
2021 Chen J, Ali MW, Yan L, Dighe SG, Dai JY, Vaughan TL, Casey G, Buas MF. Prioritization and functional analysis of GWAS risk loci for Barrett's esophagus and esophageal adenocarcinoma. Human Molecular Genetics. PMID 34505128 DOI: 10.1093/hmg/ddab259   
2021 Kessler T, Schunkert H. Coronary Artery Disease Genetics Enlightened by Genome-Wide Association Studies. Jacc. Basic to Translational Science. 6: 610-623. PMID 34368511 DOI: 10.1016/j.jacbts.2021.04.001   
2021 Hong Y, Ye J, Dong L, Li Y, Yan L, Cai G, Liu D, Tan C, Wu Z. Genome-Wide Association Study for Body Length, Body Height, and Total Teat Number in Large White Pigs. Frontiers in Genetics. 12: 650370. PMID 34408768 DOI: 10.3389/fgene.2021.650370   
2021 Abdalla IM, Lu X, Nazar M, Arbab AAI, Xu T, Yousif MH, Mao Y, Yang Z. Genome-Wide Association Study Identifies Candidate Genes Associated with Feet and Leg Conformation Traits in Chinese Holstein Cattle. Animals : An Open Access Journal From Mdpi. 11. PMID 34438715 DOI: 10.3390/ani11082259   
2021 Võsa U, Claringbould A, Westra HJ, Bonder MJ, Deelen P, Zeng B, Kirsten H, Saha A, Kreuzhuber R, Yazar S, Brugge H, Oelen R, de Vries DH, van der Wijst MGP, Kasela S, ... , ... , et al. Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. Nature Genetics. PMID 34475573 DOI: 10.1038/s41588-021-00913-z   
2021 Lin Y, Zhou K, Hu H, Jiang X, Yu S, Wang Q, Li C, Ma J, Chen G, Yang Z, Liu Y. Multi-Locus Genome-Wide Association Study of Four Yield-Related Traits in Chinese Wheat Landraces. Frontiers in Plant Science. 12: 665122. PMID 34484253 DOI: 10.3389/fpls.2021.665122   
2021 Yang D, Zheng X, Jiang L, Ye M, He X, Jin Y, Wu R. Functional Mapping of Phenotypic Plasticity of Under Vancomycin Pressure. Frontiers in Microbiology. 12: 696730. PMID 34566908 DOI: 10.3389/fmicb.2021.696730   
2021 Ikegami H, Shirasawa K, Yakushiji H, Yabe S, Sato M, Hayashi T, Tashiro K, Nogata H. Analysis of the Segregation Distortion of Genotypes Based on Whole-Genome Resequencing of Fig ( L.) Breeding Parents. Frontiers in Plant Science. 12: 647599. PMID 34447395 DOI: 10.3389/fpls.2021.647599   
2021 Kim SS, Hudgins AD, Yang J, Zhu Y, Tu Z, Rosenfeld MG, DiLorenzo TP, Suh Y. A comprehensive integrated post-GWAS analysis of Type 1 diabetes reveals enhancer-based immune dysregulation. Plos One. 16: e0257265. PMID 34529725 DOI: 10.1371/journal.pone.0257265   
2021 Mo A, Nagpal S, Gettler K, Haritunians T, Giri M, Haberman Y, Karns R, Prince J, Arafat D, Hsu NY, Chuang LS, Argmann C, Kasarskis A, Suarez-Farinas M, Gotman N, et al. Stratification of risk of progression to colectomy in ulcerative colitis via measured and predicted gene expression. American Journal of Human Genetics. PMID 34450030 DOI: 10.1016/j.ajhg.2021.07.013   
2021 Tian P, Zhong M, Wei GH. Mechanistic insights into genetic susceptibility to prostate cancer. Cancer Letters. 522: 155-163. PMID 34560228 DOI: 10.1016/j.canlet.2021.09.025   
2021 de Jorge Martínez C, Rukh G, Williams MJ, Gaudio S, Brooks S, Schiöth HB. Genetics of anorexia nervosa: an overview of genome-wide association studies and emerging biological links. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34634498 DOI: 10.1016/j.jgg.2021.09.005   
2021 Jadhav MP, Gangurde SS, Hake AA, Yadawad A, Mahadevaiah SS, Pattanashetti SK, Gowda MVC, Shirasawa K, Varshney RK, Pandey MK, Bhat RS. Genotyping-by-Sequencing Based Genetic Mapping Identified Major and Consistent Genomic Regions for Productivity and Quality Traits in Peanut. Frontiers in Plant Science. 12: 668020. PMID 34630444 DOI: 10.3389/fpls.2021.668020   
2021 Ye J, Wang X, Wang W, Yu H, Ai G, Li C, Sun P, Wang X, Li H, Ouyang B, Zhang J, Zhang Y, Han H, Giovannoni JJ, Fei Z, et al. Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato. Plant Physiology. 186: 2078-2092. PMID 34618111 DOI: 10.1093/plphys/kiab230   
2021 Jayarathna DK, Rentería ME, Malik A, Sauret E, Batra J, Gandhi NS. Integrative Transcriptome-Wide Analyses Uncover Novel Risk-Associated MicroRNAs in Hormone-Dependent Cancers. Frontiers in Genetics. 12: 716236. PMID 34512726 DOI: 10.3389/fgene.2021.716236   
2021 Chakravarti A. Magnitude of Mendelian versus complex inheritance of rare disorders. American Journal of Medical Genetics. Part A. PMID 34418293 DOI: 10.1002/ajmg.a.62463   
2021 Feng L, Ma A, Song B, Yu S, Qi X. Mapping causal genes and genetic interactions for agronomic traits using a large F2 population in rice. G3 (Bethesda, Md.). PMID 34515770 DOI: 10.1093/g3journal/jkab318   
2021 Zeng Z, Zhu S, Wang Y, Bai X, Liu C, Chen J, Zhang T, Wei Y, Li F, Bao Z, Yan L, Wang H, Liu T. Resequencing of 301 ramie accessions identifies genetic loci and breeding selection for fiber yield traits. Plant Biotechnology Journal. PMID 34558775 DOI: 10.1111/pbi.13714   
2021 Ding J, Frantzeskos A, Orozco G. Functional interrogation of autoimmune disease genetics using CRISPR/Cas9 technologies and massively parallel reporter assays. Seminars in Immunopathology. PMID 34508276 DOI: 10.1007/s00281-021-00887-4   
2021 Porcu E, Sadler MC, Lepik K, Auwerx C, Wood AR, Weihs A, Sleiman MSB, Ribeiro DM, Bandinelli S, Tanaka T, Nauck M, Völker U, Delaneau O, Metspalu A, Teumer A, et al. Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome. Nature Communications. 12: 5647. PMID 34561431 DOI: 10.1038/s41467-021-25805-y