Brian Raught - Publications

University of Toronto, Toronto, ON, Canada 
Biomechanics Biophysics

96 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wei Y, Resetca D, Li Z, Johansson-Åkhe I, Ahlner A, Helander S, Wallenhammar A, Morad V, Raught B, Wallner B, Kokubo T, Tong Y, Penn LZ, Sunnerhagen M. Multiple direct interactions of TBP with the MYC oncoprotein. Nature Structural & Molecular Biology. PMID 31686052 DOI: 10.1038/s41594-019-0321-z  0.4
2018 Kalkat M, Resetca D, Lourenco C, Chan PK, Wei Y, Shiah YJ, Vitkin N, Tong Y, Sunnerhagen M, Done SJ, Boutros PC, Raught B, Penn LZ. MYC Protein Interactome Profiling Reveals Functionally Distinct Regions that Cooperate to Drive Tumorigenesis. Molecular Cell. PMID 30415952 DOI: 10.1016/j.molcel.2018.09.031  0.4
2018 Tu WB, Shiah YJ, Lourenco C, Mullen PJ, Dingar D, Redel C, Tamachi A, Ba-Alawi W, Aman A, Al-Awar R, Cescon DW, Haibe-Kains B, Arrowsmith CH, Raught B, Boutros PC, et al. MYC Interacts with the G9a Histone Methyltransferase to Drive Transcriptional Repression and Tumorigenesis. Cancer Cell. 34: 579-595.e8. PMID 30300580 DOI: 10.1016/j.ccell.2018.09.001  0.4
2018 Li L, Guturi KKN, Gautreau B, Patel PS, Saad A, Morii M, Mateo F, Palomero L, Barbour H, Gomez A, Ng D, Kotlyar M, Pastrello C, Jackson HW, Khokha R, ... ... Raught B, et al. Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis. The Journal of Clinical Investigation. PMID 30222135 DOI: 10.1172/JCI120401  0.44
2018 Dingar D, Tu WB, Resetca D, Lourenco C, Tamachi A, De Melo J, Houlahan KE, Kalkat M, Chan PK, Boutros PC, Raught B, Penn LZ. MYC dephosphorylation by the PP1/PNUTS phosphatase complex regulates chromatin binding and protein stability. Nature Communications. 9: 3502. PMID 30158517 DOI: 10.1038/s41467-018-05660-0  0.4
2018 Odeh HM, Coyaud E, Raught B, Matunis MJ. The SUMO-Specific Isopeptidase SENP2 is Targeted to Intracellular Membranes via a Predicted N-Terminal Amphipathic α-Helix. Molecular Biology of the Cell. mbcE17070445. PMID 29874116 DOI: 10.1091/mbc.E17-07-0445  0.44
2016 Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, ... ... Raught B, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/science.aaf1420  0.84
2016 Guturi KK, Bohgaki M, Bohgaki T, Srikumar T, Ng D, Kumareswaran R, El Ghamrasni S, Jeon J, Patel P, Eldin MS, Bristow R, Cheung P, Stewart GS, Raught B, Hakem A, et al. RNF168 and USP10 regulate topoisomerase IIα function via opposing effects on its ubiquitylation. Nature Communications. 7: 12638. PMID 27558965 DOI: 10.1038/ncomms12638  0.84
2016 Stojanova A, Tu WB, Ponzielli R, Kotlyar M, Chan PK, Boutros PC, Khosravi F, Jurisica I, Raught B, Penn LZ. MYC interaction with the tumour suppressive SWI/SNF complex member INI1 regulates transcription and cellular transformation. Cell Cycle (Georgetown, Tex.). 0. PMID 27267444 DOI: 10.1080/15384101.2016.1146836  0.84
2016 Lundberg SM, Tu WB, Raught B, Penn LZ, Hoffman MM, Lee SI. ChromNet: Learning the human chromatin network from all ENCODE ChIP-seq data. Genome Biology. 17: 82. PMID 27139377 DOI: 10.1186/s13059-016-0925-0  0.84
2016 Liu G, Knight JD, Zhang JP, Tsou CC, Wang J, Lambert JP, Larsen B, Tyers M, Raught B, Bandeira N, Nesvizhskii AI, Choi H, Gingras AC. Data Independent Acquisition analysis in ProHits 4.0. Journal of Proteomics. PMID 27132685 DOI: 10.1016/j.jprot.2016.04.042  0.84
2016 Heir P, Srikumar T, Bikopoulos G, Bunda S, Poon BP, Lee JE, Raught B, Ohh M. Oxygen-Dependent Regulation of Erythropoietin Receptor Turnover And Signaling. The Journal of Biological Chemistry. PMID 26846855 DOI: 10.1074/jbc.M115.694562  0.84
2015 Bunda S, Burrell K, Heir P, Zeng L, Alamsahebpour A, Kano Y, Raught B, Zhang ZY, Zadeh G, Ohh M. Inhibition of SHP2-mediated dephosphorylation of Ras suppresses oncogenesis. Nature Communications. 6: 8859. PMID 26617336 DOI: 10.1038/ncomms9859  0.84
2015 Yeh C, Coyaud É, Bashkurov M, van der Lelij P, Cheung SW, Peters JM, Raught B, Pelletier L. The Deubiquitinase USP37 Regulates Chromosome Cohesion and Mitotic Progression. Current Biology : Cb. 25: 2290-9. PMID 26299517 DOI: 10.1016/j.cub.2015.07.025  0.84
2015 Srikumar T, Lewicki MC, Raught B. Raw data for the identification of SUMOylated proteins in S. cerevisiae subjected to two types of osmotic shock, using affinity purification coupled with mass spectrometry. Data in Brief. 2: 29-31. PMID 26217701 DOI: 10.1016/j.dib.2014.11.003  0.84
2015 Badouel C, Zander MA, Liscio N, Bagherie-Lachidan M, Sopko R, Coyaud E, Raught B, Miller FD, McNeill H. Fat1 interacts with Fat4 to regulate neural tube closure, neural progenitor proliferation and apical constriction during mouse brain development. Development (Cambridge, England). 142: 2781-91. PMID 26209645 DOI: 10.1242/dev.123539  0.84
2015 Cole A, Wang Z, Coyaud E, Voisin V, Gronda M, Jitkova Y, Mattson R, Hurren R, Babovic S, Maclean N, Restall I, Wang X, Jeyaraju DV, Sukhai MA, Prabha S, ... ... Raught B, et al. Inhibition of the Mitochondrial Protease ClpP as a Therapeutic Strategy for Human Acute Myeloid Leukemia. Cancer Cell. 27: 864-76. PMID 26058080 DOI: 10.1016/j.ccell.2015.05.004  0.84
2015 Hong JH, Ng D, Srikumar T, Raught B. The use of ubiquitin lysine mutants to characterize E2-E3 linkage specificity: Mass spectrometry offers a cautionary "tail". Proteomics. PMID 26036340 DOI: 10.1002/pmic.201500058  0.84
2015 Matsuzaki S, Lee L, Knock E, Srikumar T, Sakurai M, Hazrati LN, Katayama T, Staniszewski A, Raught B, Arancio O, Fraser PE. SUMO1 Affects Synaptic Function, Spine Density and Memory. Scientific Reports. 5: 10730. PMID 26022678 DOI: 10.1038/srep10730  0.84
2015 Coyaud E, Mis M, Laurent EM, Dunham WH, Couzens AL, Robitaille M, Gingras AC, Angers S, Raught B. BioID-based Identification of Skp Cullin F-box (SCF)β-TrCP1/2 E3 Ligase Substrates. Molecular & Cellular Proteomics : McP. 14: 1781-95. PMID 25900982 DOI: 10.1074/mcp.M114.045658  0.84
2015 Wei Y, Vellanki RN, Coyaud É, Ignatchenko V, Li L, Krieger JR, Taylor P, Tong J, Pham NA, Liu G, Raught B, Wouters BG, Kislinger T, Tsao MS, Moran MF. CHCHD2 Is Coamplified with EGFR in NSCLC and Regulates Mitochondrial Function and Cell Migration. Molecular Cancer Research : McR. 13: 1119-29. PMID 25784717 DOI: 10.1158/1541-7786.MCR-14-0165-T  0.84
2015 Hong JH, Kaustov L, Coyaud E, Srikumar T, Wan J, Arrowsmith C, Raught B. KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and lysosome-mediated degradation. Molecular & Cellular Proteomics : McP. 14: 674-85. PMID 25582440 DOI: 10.1074/mcp.M114.042168  0.84
2015 Dingar D, Kalkat M, Chan PK, Srikumar T, Bailey SD, Tu WB, Coyaud E, Ponzielli R, Kolyar M, Jurisica I, Huang A, Lupien M, Penn LZ, Raught B. BioID identifies novel c-MYC interacting partners in cultured cells and xenograft tumors. Journal of Proteomics. 118: 95-111. PMID 25452129 DOI: 10.1016/j.jprot.2014.09.029  0.84
2015 Lewicki MC, Srikumar T, Johnson E, Raught B. The S. cerevisiae SUMO stress response is a conjugation-deconjugation cycle that targets the transcription machinery. Journal of Proteomics. 118: 39-48. PMID 25434491 DOI: 10.1016/j.jprot.2014.11.012  0.84
2015 Cubeñas-Potts C, Srikumar T, Lee C, Osula O, Subramonian D, Zhang XD, Cotter RJ, Raught B, Matunis MJ. Identification of SUMO-2/3-modified proteins associated with mitotic chromosomes. Proteomics. 15: 763-72. PMID 25367092 DOI: 10.1002/pmic.201400400  0.84
2015 Tu WB, Helander S, Pilstål R, Hickman KA, Lourenco C, Jurisica I, Raught B, Wallner B, Sunnerhagen M, Penn LZ. Myc and its interactors take shape. Biochimica Et Biophysica Acta. 1849: 469-483. PMID 24933113 DOI: 10.1016/j.bbagrm.2014.06.002  0.84
2014 Chan PK, Srikumar T, Dingar D, Kalkat M, Penn LZ, Raught B. BioID data of c-MYC interacting protein partners in cultured cells and xenograft tumors. Data in Brief. 1: 76-8. PMID 26217692 DOI: 10.1016/j.dib.2014.10.001  0.84
2014 Kalkat M, Chan PK, Wasylishen AR, Srikumar T, Kim SS, Ponzielli R, Bazett-Jones DP, Raught B, Penn LZ. Identification of c-MYC SUMOylation by mass spectrometry. Plos One. 9: e115337. PMID 25522242 DOI: 10.1371/journal.pone.0115337  0.84
2014 Bunda S, Heir P, Srikumar T, Cook JD, Burrell K, Kano Y, Lee JE, Zadeh G, Raught B, Ohh M. Src promotes GTPase activity of Ras via tyrosine 32 phosphorylation. Proceedings of the National Academy of Sciences of the United States of America. 111: E3785-94. PMID 25157176 DOI: 10.1073/pnas.1406559111  0.84
2014 Samuel N, Remke M, Rutka JT, Raught B, Malkin D. Proteomic analyses of CSF aimed at biomarker development for pediatric brain tumors. Journal of Neuro-Oncology. 118: 225-38. PMID 24771250 DOI: 10.1007/s11060-014-1432-3  0.84
2014 Wasylishen AR, Kalkat M, Kim SS, Pandyra A, Chan PK, Oliveri S, Sedivy E, Konforte D, Bros C, Raught B, Penn LZ. MYC activity is negatively regulated by a C-terminal lysine cluster. Oncogene. 33: 1066-72. PMID 23435422 DOI: 10.1038/onc.2013.36  0.84
2013 Singer AU, Schulze S, Skarina T, Xu X, Cui H, Eschen-Lippold L, Egler M, Srikumar T, Raught B, Lee J, Scheel D, Savchenko A, Bonas U. Correction: A Pathogen Type III Effector with a Novel E3 Ubiquitin Ligase Architecture. Plos Pathogens. 9. PMID 29294480 DOI: 10.1371/annotation/8c6eaae4-72a7-460a-8b1a-f855731f3706  0.84
2013 Bohgaki M, Bohgaki T, El Ghamrasni S, Srikumar T, Maire G, Panier S, Fradet-Turcotte A, Stewart GS, Raught B, Hakem A, Hakem R. RNF168 ubiquitylates 53BP1 and controls its response to DNA double-strand breaks. Proceedings of the National Academy of Sciences of the United States of America. 110: 20982-7. PMID 24324146 DOI: 10.1073/pnas.1320302111  0.84
2013 Wasylishen AR, Chan-Seng-Yue M, Bros C, Dingar D, Tu WB, Kalkat M, Chan PK, Mullen PJ, Huang L, Meyer N, Raught B, Boutros PC, Penn LZ. MYC phosphorylation at novel regulatory regions suppresses transforming activity. Cancer Research. 73: 6504-15. PMID 24030976 DOI: 10.1158/0008-5472.CAN-12-4063  0.84
2013 Mellacheruvu D, Wright Z, Couzens AL, Lambert JP, St-Denis NA, Li T, Miteva YV, Hauri S, Sardiu ME, Low TY, Halim VA, Bagshaw RD, Hubner NC, Al-Hakim A, Bouchard A, ... ... Raught B, et al. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data. Nature Methods. 10: 730-6. PMID 23921808 DOI: 10.1038/nmeth.2557  0.84
2013 Bassi C, Ho J, Srikumar T, Dowling RJ, Gorrini C, Miller SJ, Mak TW, Neel BG, Raught B, Stambolic V. Nuclear PTEN controls DNA repair and sensitivity to genotoxic stress. Science (New York, N.Y.). 341: 395-9. PMID 23888040 DOI: 10.1126/science.1236188  0.84
2013 Comartin D, Gupta GD, Fussner E, Coyaud É, Hasegan M, Archinti M, Cheung SW, Pinchev D, Lawo S, Raught B, Bazett-Jones DP, Lüders J, Pelletier L. CEP120 and SPICE1 cooperate with CPAP in centriole elongation. Current Biology : Cb. 23: 1360-6. PMID 23810536 DOI: 10.1016/j.cub.2013.06.002  0.84
2013 Srikumar T, Lewicki MC, Raught B. A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome. Molecular Systems Biology. 9: 668. PMID 23712011 DOI: 10.1038/msb.2013.23  0.84
2013 Rivkin E, Almeida SM, Ceccarelli DF, Juang YC, MacLean TA, Srikumar T, Huang H, Dunham WH, Fukumura R, Xie G, Gondo Y, Raught B, Gingras AC, Sicheri F, Cordes SP. The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature. 498: 318-24. PMID 23708998 DOI: 10.1038/nature12296  0.84
2013 Srikumar T, Lewicki MC, Costanzo M, Tkach JM, van Bakel H, Tsui K, Johnson ES, Brown GW, Andrews BJ, Boone C, Giaever G, Nislow C, Raught B. Global analysis of SUMO chain function reveals multiple roles in chromatin regulation. The Journal of Cell Biology. 201: 145-63. PMID 23547032 DOI: 10.1083/jcb.201210019  0.84
2013 Singer AU, Schulze S, Skarina T, Xu X, Cui H, Eschen-Lippold L, Egler M, Srikumar T, Raught B, Lee J, Scheel D, Savchenko A, Bonas U. A pathogen type III effector with a novel E3 ubiquitin ligase architecture. Plos Pathogens. 9: e1003121. PMID 23359647 DOI: 10.1371/journal.ppat.1003121  0.84
2013 Ernst A, Avvakumov G, Tong J, Fan Y, Zhao Y, Alberts P, Persaud A, Walker JR, Neculai AM, Neculai D, Vorobyov A, Garg P, Beatty L, Chan PK, Juang YC, ... ... Raught B, et al. A strategy for modulation of enzymes in the ubiquitin system. Science (New York, N.Y.). 339: 590-5. PMID 23287719 DOI: 10.1126/science.1230161  0.84
2012 Liu G, Zhang J, Choi H, Lambert JP, Srikumar T, Larsen B, Nesvizhskii AI, Raught B, Tyers M, Gingras AC. Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit8.16. PMID 22948730 DOI: 10.1002/0471250953.bi0816s39  0.84
2012 Gingras AC, Raught B. Beyond hairballs: The use of quantitative mass spectrometry data to understand protein-protein interactions. Febs Letters. 586: 2723-31. PMID 22710165 DOI: 10.1016/j.febslet.2012.03.065  0.84
2012 Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S. A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen. Molecular & Cellular Proteomics : McP. 11: 329-41. PMID 22496338 DOI: 10.1074/mcp.O111.013706  0.84
2012 Salsman J, Jagannathan M, Paladino P, Chan PK, Dellaire G, Raught B, Frappier L. Proteomic profiling of the human cytomegalovirus UL35 gene products reveals a role for UL35 in the DNA repair response. Journal of Virology. 86: 806-20. PMID 22072767 DOI: 10.1128/JVI.05442-11  0.84
2011 Goeres J, Chan PK, Mukhopadhyay D, Zhang H, Raught B, Matunis MJ. The SUMO-specific isopeptidase SENP2 associates dynamically with nuclear pore complexes through interactions with karyopherins and the Nup107-160 nucleoporin subcomplex. Molecular Biology of the Cell. 22: 4868-82. PMID 22031293 DOI: 10.1091/mbc.E10-12-0953  0.84
2011 Fabian MR, Cieplak MK, Frank F, Morita M, Green J, Srikumar T, Nagar B, Yamamoto T, Raught B, Duchaine TF, Sonenberg N. miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT. Nature Structural & Molecular Biology. 18: 1211-7. PMID 21984185 DOI: 10.1038/nsmb.2149  0.84
2011 Békés M, Prudden J, Srikumar T, Raught B, Boddy MN, Salvesen GS. The dynamics and mechanism of SUMO chain deconjugation by SUMO-specific proteases. The Journal of Biological Chemistry. 286: 10238-47. PMID 21247896 DOI: 10.1074/jbc.M110.205153  0.84
2011 Shloush J, Vlassov JE, Engson I, Duan S, Saridakis V, Dhe-Paganon S, Raught B, Sheng Y, Arrowsmith CH. Structural and functional comparison of the RING domains of two p53 E3 ligases, Mdm2 and Pirh2. The Journal of Biological Chemistry. 286: 4796-808. PMID 21084285 DOI: 10.1074/jbc.M110.157669  0.84
2010 Liu G, Zhang J, Larsen B, Stark C, Breitkreutz A, Lin ZY, Breitkreutz BJ, Ding Y, Colwill K, Pasculescu A, Pawson T, Wrana JL, Nesvizhskii AI, Raught B, Tyers M, et al. ProHits: integrated software for mass spectrometry-based interaction proteomics. Nature Biotechnology. 28: 1015-7. PMID 20944583 DOI: 10.1038/nbt1010-1015  0.84
2010 Sydorskyy Y, Srikumar T, Jeram SM, Wheaton S, Vizeacoumar FJ, Makhnevych T, Chong YT, Gingras AC, Raught B. A novel mechanism for SUMO system control: regulated Ulp1 nucleolar sequestration. Molecular and Cellular Biology. 30: 4452-62. PMID 20647537 DOI: 10.1128/MCB.00335-10  0.84
2010 Jeanne M, Lallemand-Breitenbach V, Ferhi O, Koken M, Le Bras M, Duffort S, Peres L, Berthier C, Soilihi H, Raught B, de Thé H. PML/RARA oxidation and arsenic binding initiate the antileukemia response of As2O3. Cancer Cell. 18: 88-98. PMID 20609355 DOI: 10.1016/j.ccr.2010.06.003  0.84
2010 Bidinosti M, Ran I, Sanchez-Carbente MR, Martineau Y, Gingras AC, Gkogkas C, Raught B, Bramham CR, Sossin WS, Costa-Mattioli M, DesGroseillers L, Lacaille JC, Sonenberg N. Postnatal deamidation of 4E-BP2 in brain enhances its association with raptor and alters kinetics of excitatory synaptic transmission. Molecular Cell. 37: 797-808. PMID 20347422 DOI: 10.1016/j.molcel.2010.02.022  0.84
2010 Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, et al. Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. The Journal of Cell Biology. 188: 69-81. PMID 20065090 DOI: 10.1083/jcb.200909013  0.84
2010 Jeram SM, Srikumar T, Zhang XD, Anne Eisenhauer H, Rogers R, Pedrioli PG, Matunis M, Raught B. An improved SUMmOn-based methodology for the identification of ubiquitin and ubiquitin-like protein conjugation sites identifies novel ubiquitin-like protein chain linkages. Proteomics. 10: 254-65. PMID 20029837 DOI: 10.1002/pmic.200900648  0.84
2010 Srikumar T, Jeram SM, Lam H, Raught B. A ubiquitin and ubiquitin-like protein spectral library. Proteomics. 10: 337-42. PMID 19899083 DOI: 10.1002/pmic.200900627  0.84
2009 Jeram SM, Srikumar T, Pedrioli PG, Raught B. Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites. Proteomics. 9: 922-34. PMID 19180541 DOI: 10.1002/pmic.200800666  0.84
2009 Makhnevych T, Sydorskyy Y, Xin X, Srikumar T, Vizeacoumar FJ, Jeram SM, Li Z, Bahr S, Andrews BJ, Boone C, Raught B. Global map of SUMO function revealed by protein-protein interaction and genetic networks. Molecular Cell. 33: 124-35. PMID 19150434 DOI: 10.1016/j.molcel.2008.12.025  0.84
2009 Goudreault M, D'Ambrosio LM, Kean MJ, Mullin MJ, Larsen BG, Sanchez A, Chaudhry S, Chen GI, Sicheri F, Nesvizhskii AI, Aebersold R, Raught B, Gingras AC. A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein. Molecular & Cellular Proteomics : McP. 8: 157-71. PMID 18782753 DOI: 10.1074/mcp.M800266-MCP200  0.84
2008 Lallemand-Breitenbach V, Jeanne M, Benhenda S, Nasr R, Lei M, Peres L, Zhou J, Zhu J, Raught B, de Thé H. Arsenic degrades PML or PML-RARalpha through a SUMO-triggered RNF4/ubiquitin-mediated pathway. Nature Cell Biology. 10: 547-55. PMID 18408733 DOI: 10.1038/ncb1717  0.84
2008 McCluskey AJ, Poon GMK, Bolewska-Pedyczak E, Srikumar T, Jeram SM, Raught B, Gariépy J. The Catalytic Subunit of Shiga-like Toxin 1 Interacts with Ribosomal Stalk Proteins and is Inhibited by Their Conserved C-Terminal Domain Journal of Molecular Biology. 378: 375-386. PMID 18358491 DOI: 10.1016/j.jmb.2008.02.014  0.84
2007 Gingras AC, Gstaiger M, Raught B, Aebersold R. Analysis of protein complexes using mass spectrometry. Nature Reviews. Molecular Cell Biology. 8: 645-54. PMID 17593931 DOI: 10.1038/nrm2208  0.84
2007 Mallick P, Schirle M, Chen SS, Flory MR, Lee H, Martin D, Ranish J, Raught B, Schmitt R, Werner T, Kuster B, Aebersold R. Computational prediction of proteotypic peptides for quantitative proteomics. Nature Biotechnology. 25: 125-31. PMID 17195840 DOI: 10.1038/nbt1275  0.84
2006 King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R. Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas. Genome Biology. 7: R106. PMID 17101051 DOI: 10.1186/gb-2006-7-11-r106  0.84
2006 Pedrioli PG, Raught B, Zhang XD, Rogers R, Aitchison J, Matunis M, Aebersold R. Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software. Nature Methods. 3: 533-9. PMID 16791211 DOI: 10.1038/nmeth891  0.84
2006 Shahbazian D, Roux PP, Mieulet V, Cohen MS, Raught B, Taunton J, Hershey JW, Blenis J, Pende M, Sonenberg N. The mTOR/PI3K and MAPK pathways converge on eIF4B to control its phosphorylation and activity. The Embo Journal. 25: 2781-91. PMID 16763566 DOI: 10.1038/sj.emboj.7601166  0.84
2005 Svitkin YV, Herdy B, Costa-Mattioli M, Gingras AC, Raught B, Sonenberg N. Eukaryotic translation initiation factor 4E availability controls the switch between cap-dependent and internal ribosomal entry site-mediated translation. Molecular and Cellular Biology. 25: 10556-65. PMID 16287867 DOI: 10.1128/MCB.25.23.10556-10565.2005  0.84
2005 Gingras AC, Caballero M, Zarske M, Sanchez A, Hazbun TR, Fields S, Sonenberg N, Hafen E, Raught B, Aebersold R. A novel, evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity. Molecular & Cellular Proteomics : McP. 4: 1725-40. PMID 16085932 DOI: 10.1074/mcp.M500231-MCP200  0.84
2005 Yi EC, Li XJ, Cooke K, Lee H, Raught B, Page A, Aneliunas V, Hieter P, Goodlett DR, Aebersold R. Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme. Proteomics. 5: 380-7. PMID 15648049 DOI: 10.1002/pmic.200400970  0.84
2005 Gingras AC, Aebersold R, Raught B. Advances in protein complex analysis using mass spectrometry. The Journal of Physiology. 563: 11-21. PMID 15611014 DOI: 10.1113/jphysiol.2004.080440  0.84
2004 Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, et al. A common open representation of mass spectrometry data and its application to proteomics research. Nature Biotechnology. 22: 1459-66. PMID 15529173 DOI: 10.1038/nbt1031  0.84
2004 Raught B, Peiretti F, Gingras AC, Livingstone M, Shahbazian D, Mayeur GL, Polakiewicz RD, Sonenberg N, Hershey JW. Phosphorylation of eucaryotic translation initiation factor 4B Ser422 is modulated by S6 kinases. The Embo Journal. 23: 1761-9. PMID 15071500 DOI: 10.1038/sj.emboj.7600193  0.84
2004 Gingras AC, Raught B, Sonenberg N. mTOR signaling to translation. Current Topics in Microbiology and Immunology. 279: 169-97. PMID 14560958  0.84
2003 Qin H, Raught B, Sonenberg N, Goldstein EG, Edelman AM. Phosphorylation screening identifies translational initiation factor 4GII as an intracellular target of Ca(2+)/calmodulin-dependent protein kinase I. The Journal of Biological Chemistry. 278: 48570-9. PMID 14507913 DOI: 10.1074/jbc.M308781200  0.84
2002 Deng J, Harding HP, Raught B, Gingras AC, Berlanga JJ, Scheuner D, Kaufman RJ, Ron D, Sonenberg N. Activation of GCN2 in UV-irradiated cells inhibits translation. Current Biology : Cb. 12: 1279-86. PMID 12176355 DOI: 10.1016/S0960-9822(02)01037-0  0.84
2002 Lachance PE, Miron M, Raught B, Sonenberg N, Lasko P. Phosphorylation of eukaryotic translation initiation factor 4E is critical for growth. Molecular and Cellular Biology. 22: 1656-63. PMID 11865045 DOI: 10.1128/MCB.22.6.1656-1663.2002  0.84
2001 Gingras AC, Raught B, Gygi SP, Niedzwiecka A, Miron M, Burley SK, Polakiewicz RD, Wyslouch-Cieszynska A, Aebersold R, Sonenberg N. Hierarchical phosphorylation of the translation inhibitor 4E-BP1. Genes & Development. 15: 2852-64. PMID 11691836 DOI: 10.1101/gad.912401  0.84
2001 Gingras AC, Raught B, Sonenberg N. Control of translation by the target of rapamycin proteins. Progress in Molecular and Subcellular Biology. 27: 143-74. PMID 11575159  0.84
2001 Evdokimova V, Ruzanov P, Imataka H, Raught B, Svitkin Y, Ovchinnikov LP, Sonenberg N. The major mRNA-associated protein YB-1 is a potent 5' cap-dependent mRNA stabilizer. The Embo Journal. 20: 5491-502. PMID 11574481 DOI: 10.1093/emboj/20.19.5491  0.84
2001 Raught B, Gingras AC, Sonenberg N. The target of rapamycin (TOR) proteins. Proceedings of the National Academy of Sciences of the United States of America. 98: 7037-44. PMID 11416184 DOI: 10.1073/pnas.121145898  0.84
2001 Gingras AC, Raught B, Sonenberg N. Regulation of translation initiation by FRAP/mTOR. Genes & Development. 15: 807-26. PMID 11297505 DOI: 10.1101/gad.887201  0.84
2000 Raught B, Gingras AC, Gygi SP, Imataka H, Morino S, Gradi A, Aebersold R, Sonenberg N. Serum-stimulated, rapamycin-sensitive phosphorylation sites in the eukaryotic translation initiation factor 4GI. The Embo Journal. 19: 434-44. PMID 10654941 DOI: 10.1093/emboj/19.3.434  0.84
1999 Gingras AC, Raught B, Sonenberg N. eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation. Annual Review of Biochemistry. 68: 913-63. PMID 10872469 DOI: 10.1146/annurev.biochem.68.1.913  0.84
1999 Gingras AC, Gygi SP, Raught B, Polakiewicz RD, Abraham RT, Hoekstra MF, Aebersold R, Sonenberg N. Regulation of 4E-BP1 phosphorylation: a novel two-step mechanism. Genes & Development. 13: 1422-37. PMID 10364159 DOI: 10.1101/gad.13.11.1422  0.84
1999 Raught B, Gingras AC. eIF4E activity is regulated at multiple levels. The International Journal of Biochemistry & Cell Biology. 31: 43-57. PMID 10216943 DOI: 10.1016/S1357-2725(98)00131-9  0.84
1998 Seagroves TN, Krnacik S, Raught B, Gay J, Burgess-Beusse B, Darlington GJ, Rosen JM. C/EBPβ, but not C/EBPα, is essential for ductal morphogenesis, lobuloalveolar proliferation, and functional differentiation in the mouse mammary gland Genes and Development. 12: 1917-1928. PMID 9637692  0.84
1998 Rosen JM, Zahnow C, Kazansky A, Raught B. Composite response elements mediate hormonal and developmental regulation of milk protein gene expression Biochemical Society Symposium. 63: 101-113. PMID 9513715  0.84
1998 Gradi A, Imataka H, Svitkin YV, Rom E, Raught B, Morino S, Sonenberg N. A novel functional human eukaryotic translation initiation factor 4G. Molecular and Cellular Biology. 18: 334-42. PMID 9418880  0.84
1996 Dajee M, Kazansky AV, Raught B, Hocke GM, Fey GH, Richards JS. Prolactin induction of the α2-macroglobulin gene in rat ovarian granulosa cells: Stat 5 activation and binding to the interleukin-6 response element Molecular Endocrinology. 10: 171-184. PMID 8825557 DOI: 10.1210/mend.10.2.8825557  0.84
1996 Raught B, Gingras AC, James A, Medina D, Sonenberg N, Rosen JM. Expression of a translationally regulated, dominant-negative CCAAT/enhancer-binding protein β isoform and up-regulation of the eukaryotic translation initiation factor 2α are correlated with neoplastic transformation of mammary epithelial cells Cancer Research. 56: 4382-4386. PMID 8813130  0.84
1996 Rosen JM, Li S, Raught B, Hadsell D. The mammary gland as a bioreactor: Factors regulating the efficient expression of milk protein-based transgenes American Journal of Clinical Nutrition. 63. PMID 8599330  0.84
1995 Kazansky AV, Raught B, Lindsey SM, Wang YF, Rosen JM. Regulation of mammary gland factor/Stat5a during mammary gland development Molecular Endocrinology. 9: 1598-1609. PMID 8584036  0.84
1995 Raught B, Liao WS, Rosen JM. Developmentally and hormonally regulated CCAAT/enhancer-binding protein isoforms influence beta-casein gene expression. Molecular Endocrinology (Baltimore, Md.). 9: 1223-32. PMID 7491114 DOI: 10.1210/mend.9.9.7491114  0.84
1994 Raught B, Khursheed B, Kazansky A, Rosen J. YY1 represses β-casein gene expression by preventing the formation of a lactation-associated complex Molecular and Cellular Biology. 14: 1752-1763. PMID 8114709  0.84
1994 Rosen JM, Humphreys R, Krnacik S, Juo P, Raught B. The regulation of mammary gland development by hormones, growth factors, and oncogenes Progress in Clinical and Biological Research. 387: 95-111. PMID 7972261  0.84
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