Year |
Citation |
Score |
2020 |
Zhang Z, Wang W, Xia R, Pan G, Wang J, Tang J. Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm. Bmc Bioinformatics. 21: 516. PMID 33176688 DOI: 10.1186/s12859-020-03833-7 |
0.318 |
|
2020 |
Li S, Jiang L, Tang J, Gao N, Guo F. Kernel Fusion Method for Detecting Cancer Subtypes via Selecting Relevant Expression Data. Frontiers in Genetics. 11: 979. PMID 33133130 DOI: 10.3389/Fgene.2020.00979 |
0.493 |
|
2020 |
Li J, Pu Y, Tang J, Zou Q, Guo F. DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences. Briefings in Bioinformatics. PMID 32778871 DOI: 10.1093/Bib/Bbaa159 |
0.315 |
|
2020 |
Guo X, Zhou W, Yu Y, Ding Y, Tang J, Guo F. A Novel Triple Matrix Factorization Method for Detecting Drug-Side Effect Association Based on Kernel Target Alignment. Biomed Research International. 2020: 4675395. PMID 32596314 DOI: 10.1155/2020/4675395 |
0.31 |
|
2020 |
Zhang J, Zhang Z, Pu L, Tang J, Guo F. AIEpred: an ensemble predictive model of classifier chain to identify anti-inflammatory peptides. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31985437 DOI: 10.1109/Tcbb.2020.2968419 |
0.308 |
|
2020 |
Wang Z, He W, Tang J, Guo F. Identification of highest-affinity binding sites of yeast transcription factor families. Journal of Chemical Information and Modeling. PMID 31944107 DOI: 10.1021/Acs.Jcim.9B01012 |
0.386 |
|
2020 |
Pan G, Wang J, Zhao L, Hoskins W, Tang J. Computational Methods for Predicting DNA Binding Proteins Current Proteomics. 17: 258-270. DOI: 10.2174/1570164616666190722141129 |
0.355 |
|
2020 |
Ding Y, Chen F, Guo X, Tang J, Wu H. Identification of DNA-Binding Proteins by Multiple Kernel Support Vector Machine and Sequence Information Current Proteomics. 17: 302-310. DOI: 10.2174/1570164616666190417100509 |
0.3 |
|
2020 |
Wang H, Ding Y, Tang J, Guo F. Identification of membrane protein types via multivariate information fusion with Hilbert–Schmidt Independence Criterion Neurocomputing. 383: 257-269. DOI: 10.1016/J.Neucom.2019.11.103 |
0.313 |
|
2020 |
Ding Y, Tang J, Guo F. Identification of Drug–Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion Knowledge Based Systems. 204: 106254. DOI: 10.1016/J.Knosys.2020.106254 |
0.341 |
|
2020 |
Ding Y, Tang J, Guo F. Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation Applied Soft Computing. 96: 106596. DOI: 10.1016/J.Asoc.2020.106596 |
0.323 |
|
2019 |
Shen Y, Ding Y, Tang J, Zou Q, Guo F. Critical evaluation of web-based prediction tools for human protein subcellular localization. Briefings in Bioinformatics. PMID 31697319 DOI: 10.1093/Bib/Bbz106 |
0.329 |
|
2019 |
Zou Y, Ding Y, Tang J, Guo F, Peng L. FKRR-MVSF: A Fuzzy Kernel Ridge Regression Model for Identifying DNA-Binding Proteins by Multi-View Sequence Features via Chou's Five-Step Rule. International Journal of Molecular Sciences. 20. PMID 31454964 DOI: 10.3390/Ijms20174175 |
0.347 |
|
2019 |
Jiang L, Wang C, Tang J, Guo F. Correction to: LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data. Bmc Genomics. 20: 365. PMID 31084602 DOI: 10.1186/S12864-019-5742-X |
0.337 |
|
2019 |
Jiang L, Wang C, Tang J, Guo F. LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data. Bmc Genomics. 20: 306. PMID 31014252 DOI: 10.1186/S12864-019-5654-9 |
0.328 |
|
2019 |
Ding Y, Tang J, Guo F. The computational models of drug-target interaction prediction. Protein and Peptide Letters. PMID 30968771 DOI: 10.2174/0929866526666190410124110 |
0.343 |
|
2019 |
Jiang L, Xiao Y, Ding Y, Tang J, Guo F. Discovering Cancer Subtypes via an Accurate Fusion Strategy on Multiple Profile Data. Frontiers in Genetics. 10: 20. PMID 30804977 DOI: 10.3389/Fgene.2019.00020 |
0.334 |
|
2019 |
Shen C, Ding Y, Tang J, Jiang L, Guo F. LPI-KTASLP: Prediction of LncRNA-Protein Interaction by Semi-Supervised Link Learning With Multivariate Information Ieee Access. 7: 13486-13496. DOI: 10.1109/Access.2019.2894225 |
0.327 |
|
2018 |
Shen C, Ding Y, Tang J, Guo F. Multivariate Information Fusion With Fast Kernel Learning to Kernel Ridge Regression in Predicting LncRNA-Protein Interactions. Frontiers in Genetics. 9: 716. PMID 30697228 DOI: 10.3389/Fgene.2018.00716 |
0.35 |
|
2018 |
Shen Y, Tang J, Guo F. Identification of protein subcellular localization via integrating evolutionary and physicochemical information into Chou's general PseAAC. Journal of Theoretical Biology. PMID 30452958 DOI: 10.1016/J.Jtbi.2018.11.012 |
0.328 |
|
2018 |
Xia R, Lin Y, Zhou J, Geng T, Bing F, Tang J. Phylogenetic Reconstruction for Copy-Number Evolution Problems. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29993694 DOI: 10.1109/Tcbb.2018.2829698 |
0.339 |
|
2018 |
Zhang Y, An L, Xu J, Zhang B, Zheng WJ, Hu M, Tang J, Yue F. Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus. Nature Communications. 9: 750. PMID 29467363 DOI: 10.1038/S41467-018-03113-2 |
0.546 |
|
2018 |
Pan G, Jiang L, Tang J, Guo F. A Novel Computational Method for Detecting DNA Methylation Sites with DNA Sequence Information and Physicochemical Properties. International Journal of Molecular Sciences. 19. PMID 29419752 DOI: 10.3390/Ijms19020511 |
0.349 |
|
2018 |
Zhang Y, Hoskins W, Xia R, Xia X, Zheng JW, Tang J. A flexible approach to reconstruct the genomic spatial structure by the genetic algorithm International Journal of Computational Biology and Drug Design. 11: 39-51. DOI: 10.1504/Ijcbdd.2018.090825 |
0.331 |
|
2018 |
Jang SM, Geng T, Li JQ, Xia R, Huang C, Kim H, Tang J. A computational approach for examining the roots and spreading patterns of fake news: Evolution tree analysis Computers in Human Behavior. 84: 103-113. DOI: 10.1016/J.Chb.2018.02.032 |
0.31 |
|
2017 |
Zhou L, Lin Y, Feng B, Zhao J, Tang J. Phylogeny analysis from gene-order data with massive duplications. Bmc Genomics. 18: 760. PMID 29513196 DOI: 10.1186/S12864-017-4129-0 |
0.483 |
|
2017 |
Wei L, Tang J, Zou Q. SkipCPP-Pred: an improved and promising sequence-based predictor for predicting cell-penetrating peptides. Bmc Genomics. 18: 742. PMID 29513192 DOI: 10.1186/S12864-017-4128-1 |
0.301 |
|
2017 |
Shen C, Ding Y, Tang J, Song J, Guo F. Identification of DNA-protein Binding Sites through Multi-Scale Local Average Blocks on Sequence Information. Molecules (Basel, Switzerland). 22. PMID 29182548 DOI: 10.3390/Molecules22122079 |
0.339 |
|
2017 |
Ding Y, Tang J, Guo F. Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier. Journal of Chemical Information and Modeling. PMID 29125297 DOI: 10.1021/Acs.Jcim.7B00307 |
0.355 |
|
2017 |
Feng B, Lin Y, Zhou L, Guo Y, Friedman R, Xia R, Hu F, Liu C, Tang J. Reconstructing Yeasts Phylogenies and Ancestors from Whole Genome Data. Scientific Reports. 7: 15209. PMID 29123238 DOI: 10.1038/S41598-017-15484-5 |
0.469 |
|
2017 |
Feng B, Zhou L, Tang J. Ancestral Genome Reconstruction on Whole Genome Level. Current Genomics. 18: 306-315. PMID 29081686 DOI: 10.2174/1389202918666170307120943 |
0.445 |
|
2017 |
Xia R, Lin Y, Zhou J, Feng B, Tang J. A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 29035570 DOI: 10.1089/Cmb.2017.0157 |
0.428 |
|
2017 |
Wang Y, Ding Y, Guo F, Wei L, Tang J. Improved detection of DNA-binding proteins via compression technology on PSSM information. Plos One. 12: e0185587. PMID 28961273 DOI: 10.1371/Journal.Pone.0185587 |
0.345 |
|
2017 |
Zhang Z, Guo K, Pan G, Tang J, Guo F. Improvement of phylogenetic method to analyze compositional heterogeneity. Bmc Systems Biology. 11: 79. PMID 28950863 DOI: 10.1186/S12918-017-0453-X |
0.366 |
|
2017 |
Shen C, Ding Y, Tang J, Xu X, Guo F. An Ameliorated Prediction of Drug-Target Interactions Based on Multi-Scale Discrete Wavelet Transform and Network Features. International Journal of Molecular Sciences. 18. PMID 28813000 DOI: 10.3390/Ijms18081781 |
0.304 |
|
2017 |
Luo H, Huang Y, Stepanauskas R, Tang J. Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes. Nature Microbiology. 2: 17091. PMID 28604700 DOI: 10.1038/Nmicrobiol.2017.91 |
0.392 |
|
2017 |
Chen QY, Tang J, Du PF. Predicting protein lysine phosphoglycerylation sites by hybridizing many sequence based features. Molecular Biosystems. PMID 28396891 DOI: 10.1039/C6Mb00875E |
0.332 |
|
2017 |
Pan G, Tang J, Guo F. Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution. Scientific Reports. 7: 43597. PMID 28240320 DOI: 10.1038/Srep43597 |
0.349 |
|
2017 |
Wei L, Xing P, Tang J, Zou Q. PhosPred-RF: a novel sequence-based predictor for phosphorylation sites using sequential information only. Ieee Transactions On Nanobioscience. PMID 28166503 DOI: 10.1109/Tnb.2017.2661756 |
0.331 |
|
2017 |
Wei L, Ding Y, Su R, Tang J, Zou Q. Prediction of human protein subcellular localization using deep learning Journal of Parallel and Distributed Computing. 117: 212-217. DOI: 10.1016/J.Jpdc.2017.08.009 |
0.302 |
|
2017 |
Ding Y, Tang J, Guo F. Identification of drug-target interactions via multiple information integration Information Sciences. 418: 546-560. DOI: 10.1016/J.Ins.2017.08.045 |
0.343 |
|
2017 |
Wei L, Tang J, Zou Q. Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information Information Sciences. 384: 135-144. DOI: 10.1016/J.Ins.2016.06.026 |
0.332 |
|
2016 |
Zou Q, Wan S, Ju Y, Tang J, Zeng X. Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy. Bmc Systems Biology. 10: 114. PMID 28155714 DOI: 10.1186/S12918-016-0353-5 |
0.314 |
|
2016 |
Zhou J, Lin Y, Rajan V, Hoskins W, Feng B, Tang J. Analysis of gene copy number changes in tumor phylogenetics. Algorithms For Molecular Biology : Amb. 11: 26. PMID 27688796 DOI: 10.1186/S13015-016-0088-2 |
0.305 |
|
2016 |
Ding Y, Tang J, Guo F. Predicting protein-protein interactions via multivariate mutual information of protein sequences. Bmc Bioinformatics. 17: 398. PMID 27677692 DOI: 10.1186/S12859-016-1253-9 |
0.317 |
|
2016 |
Ding Y, Tang J, Guo F. Identification of Protein-Protein Interactions via a Novel Matrix-Based Sequence Representation Model with Amino Acid Contact Information. International Journal of Molecular Sciences. 17. PMID 27669239 DOI: 10.3390/Ijms17101623 |
0.371 |
|
2015 |
Gao N, Zhang Y, Feng B, Tang J. A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1248-1254. PMID 26671797 DOI: 10.1109/Tcbb.2015.2430860 |
0.594 |
|
2015 |
Guo F, Ding Y, Li Z, Tang J. Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface. Journal of Chemical Information and Modeling. PMID 26284382 DOI: 10.1021/Acs.Jcim.5B00320 |
0.326 |
|
2015 |
Yin Z, Tang J, Schaeffer SW, Bader DA. Exemplar or matching: modeling DCJ problems with unequal content genome data Journal of Combinatorial Optimization. DOI: 10.1007/S10878-015-9940-4 |
0.436 |
|
2014 |
Hu F, Zhou J, Zhou L, Tang J. Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 667-72. PMID 26356337 DOI: 10.1109/Tcbb.2014.2309602 |
0.462 |
|
2014 |
Hu F, Lin Y, Tang J. MLGO: phylogeny reconstruction and ancestral inference from gene-order data. Bmc Bioinformatics. 15: 354. PMID 25376663 DOI: 10.1186/S12859-014-0354-6 |
0.459 |
|
2014 |
Shepherd JJ, Zhou L, Arndt W, Zhang Y, Zheng WJ, Tang J. Exploring genomes with a game engine. Faraday Discussions. 169: 443-53. PMID 25340329 DOI: 10.1039/C3Fd00152K |
0.746 |
|
2014 |
Yang N, Hu F, Zhou L, Tang J. Reconstruction of ancestral gene orders using probabilistic and gene encoding approaches. Plos One. 9: e108796. PMID 25302942 DOI: 10.1371/Journal.Pone.0108796 |
0.467 |
|
2014 |
Qin T, Matmati N, Tsoi LC, Mohanty BK, Gao N, Tang J, Lawson AB, Hannun YA, Zheng WJ. Finding pathway-modulating genes from a novel Ontology Fingerprint-derived gene network. Nucleic Acids Research. 42: e138. PMID 25063300 DOI: 10.1093/Nar/Gku678 |
0.519 |
|
2013 |
Gao N, Yang N, Tang J. Ancestral genome inference using a genetic algorithm approach. Plos One. 8: e62156. PMID 23658708 DOI: 10.1371/Journal.Pone.0062156 |
0.614 |
|
2013 |
Du FK, Xu F, Qu H, Feng S, Tang J, Wu R. Exploiting the transcriptome of Euphrates Poplar, Populus euphratica (Salicaceae) to develop and characterize new EST-SSR markers and construct an EST-SSR database. Plos One. 8: e61337. PMID 23593466 DOI: 10.1371/Journal.Pone.0061337 |
0.31 |
|
2013 |
Lin Y, Hu F, Tang J, Moret BM. Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 285-96. PMID 23424133 |
0.339 |
|
2012 |
Luo H, Arndt W, Zhang Y, Shi G, Alekseyev MA, Tang J, Hughes AL, Friedman R. Phylogenetic analysis of genome rearrangements among five mammalian orders. Molecular Phylogenetics and Evolution. 65: 871-82. PMID 22929217 DOI: 10.1016/J.Ympev.2012.08.008 |
0.783 |
|
2012 |
Zhang Y, Hu F, Tang J. A mixture framework for inferring ancestral gene orders. Bmc Genomics. 13: S7. PMID 22369143 DOI: 10.1186/1471-2164-13-S1-S7 |
0.626 |
|
2011 |
Sakib MN, Tang J, Zheng WJ, Huang CT. Improving transmission efficiency of large sequence alignment/map (SAM) files. Plos One. 6: e28251. PMID 22164252 DOI: 10.1371/Journal.Pone.0028251 |
0.348 |
|
2011 |
Kang S, Tang J, Schaeffer SW, Bader DA. Rec-DCM-Eigen: reconstructing a less parsimonious but more accurate tree in shorter time. Plos One. 6: e22483. PMID 21887219 DOI: 10.1371/Journal.Pone.0022483 |
0.457 |
|
2011 |
Luo H, Friedman R, Tang J, Hughes AL. Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus. Molecular Biology and Evolution. 28: 2751-60. PMID 21531921 DOI: 10.1093/Molbev/Msr081 |
0.42 |
|
2011 |
Luo H, Tang J, Friedman R, Hughes AL. Ongoing purifying selection on intergenic spacers in group A streptococcus. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 343-8. PMID 21115137 DOI: 10.1016/J.Meegid.2010.11.005 |
0.379 |
|
2010 |
Asbury TM, Mitman M, Tang J, Zheng WJ. Genome3D: a viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. Bmc Bioinformatics. 11: 444. PMID 20813045 DOI: 10.1186/1471-2105-11-444 |
0.343 |
|
2010 |
Shi J, Zhang Y, Luo H, Tang J. Using jackknife to assess the quality of gene order phylogenies. Bmc Bioinformatics. 11: 168. PMID 20370914 DOI: 10.1186/1471-2105-11-168 |
0.616 |
|
2009 |
Luo H, Sun Z, Arndt W, Shi J, Friedman R, Tang J. Gene order phylogeny and the evolution of methanogens. Plos One. 4: e6069. PMID 19562076 DOI: 10.1371/Journal.Pone.0006069 |
0.745 |
|
2009 |
Yue F, Tang J. A space-efficient algorithm for three sequence alignment and ancestor inference. International Journal of Data Mining and Bioinformatics. 3: 192-204. PMID 19517989 DOI: 10.1504/IJDMB.2009.024851 |
0.485 |
|
2009 |
Zhang M, Arndt W, Tang J. An exact solver for the DCJ median problem. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 138-49. PMID 19209699 |
0.719 |
|
2009 |
Swenson KM, To Y, Tang J, Moret BM. Maximum independent sets of commuting and noninterfering inversions. Bmc Bioinformatics. 10: S6. PMID 19208163 DOI: 10.1186/1471-2105-10-S1-S6 |
0.337 |
|
2009 |
Yue F, Shi J, Tang J. Simultaneous phylogeny reconstruction and multiple sequence alignment. Bmc Bioinformatics. 10: S11. PMID 19208110 DOI: 10.1186/1471-2105-10-S1-S11 |
0.604 |
|
2008 |
Luo H, Shi J, Arndt W, Tang J, Friedman R. Gene order phylogeny of the genus Prochlorococcus. Plos One. 3: e3837. PMID 19050756 DOI: 10.1371/Journal.Pone.0003837 |
0.736 |
|
2008 |
Yue F, Zhang M, Tang J. Phylogenetic reconstruction from transpositions. Bmc Genomics. 9: S15. PMID 18831780 DOI: 10.1186/1471-2164-9-S2-S15 |
0.637 |
|
2008 |
Arndt W, Tang J. Improving reversal median computation using commuting reversals and cycle information. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 1079-92. PMID 18774904 DOI: 10.1089/Cmb.2008.0116 |
0.757 |
|
2008 |
Yue F, Cui L, dePamphilis CW, Moret BM, Tang J. Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat. Bmc Genomics. 9: S25. PMID 18366615 DOI: 10.1186/1471-2164-9-S1-S25 |
0.626 |
|
2006 |
Cui L, Leebens-Mack J, Wang LS, Tang J, Rymarquis L, Stern DB, dePamphilis CW. Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach. Bmc Evolutionary Biology. 6: 13. PMID 16469102 DOI: 10.1186/1471-2148-6-13 |
0.433 |
|
2003 |
Tang J, Moret BM. Scaling up accurate phylogenetic reconstruction from gene-order data. Bioinformatics (Oxford, England). 19: i305-12. PMID 12855474 DOI: 10.1093/Bioinformatics/Btg1042 |
0.448 |
|
2003 |
Moret BME, Tang J, Wang LS, Warnow T. Steps toward accurate reconstructions of phylogenies from gene-order data Journal of Computer and System Sciences. 65: 508-525. DOI: 10.1016/S0022-0000(02)00007-7 |
0.435 |
|
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